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Yujie Chi

Publications and source records attributed to Yujie Chi.

9 recordsLinked to original sources

A Machine-to-Machine Knowledge-Guided LLM Agent for Generalizable Radiotherapy Treatment Planning

In this work, we propose a prototype machine-to-machine (M2M) knowledge-guided Large Language Model (LLM) framework for automated radiotherapy treatment planning. In the proposed paradigm, Treatment Planning Parameter (TPP) distribution knowledge discovered by a Deep Reinforcement Learning (DRL) agent is transferred to an LLM agent through in-context learning, enabling autonomous iterative planning without human intervention. While standard LLM-based planning often lacks physical intuition and struggles with convergence, the integration of DRL-derived guidance constrains the agent to a physically valid parameter space. Experimental evaluations are performed across three diverse planning scenarios: basic prostate cases, complex prostate configurations with increased organ-at-risk (OAR) constraints, and liver cases. The evaluation results demonstrate that the guided LLM agent consistently achieves optimal planning scores while significantly reducing the number of iterations compared to unguided planning. Analysis of the final TPP configurations reveals that the agent successfully learns a hierarchical priority of objectives, effectively restoring a logical "cause-and-effect" relationship between parameter tuning and dosimetric outcomes. Crucially, this prototype framework exhibits robust generalizability, maintaining high planning quality regardless of specific patient anatomy, treatment site, or initial plan quality. By bridging the specialized optimization of DRL with the adaptive reasoning of LLMs, this M2M framework establishes a scalable foundation towards generalizable autonomous treatment planning, ultimately benefiting clinical practice in realistic environments.

physics.med-ph

Extending gPET for Multi-Layer PET Simulation

Depth-of-interaction (DOI) encoding is an effective strategy for reducing parallax error and preserving spatial resolution in positron emission tomography (PET), particularly in compact small-animal scanners. To enable efficient simulation-driven design of DOI-capable systems, we extend the GPU-accelerated Monte Carlo toolkit gPET to support flexible multi-layer detector geometries. The original three-level hierarchical detector model in gPET (panel-module-crystal) was expanded by introducing an intermediate "layer" level, enabling parameterized modeling of stacked scintillator architectures. The photon transport algorithm was correspondingly updated to sample interactions across multiple layers and detector panels while preserving GPU-efficient memory usage. The framework was validated using three scanner configurations: a conventional single-layer ring (H2RSPET-1CL), an aligned split-layer design (H2RSPET-1CL-split), and an offset dual-layer design (H2RSPET-2CL). System performance was evaluated following NEMA NU4-2008 protocols using sensitivity, spatial resolution, and Derenzo phantom simulations with CASToR-based maximum likelihood expectation maximization reconstruction. The H2RSPET-1CL and H2RSPET-1CL-split configurations produced statistically identical hit distributions, while H2RSPET-2CL exhibited the expected offset interaction patterns. Sensitivity of H2RSPET-2CL remained comparable to H2RSPET-1CL, generally within about 2-5 percent, while radial spatial resolution improved substantially (0.8-1.6 mm vs. 1.0-4.2 mm from the center to a 50 mm radial offset). Runtime performance remained essentially unchanged between configurations. The extended gPET framework therefore enables fast and flexible simulation of multi-layer PET detectors and supports efficient optimization of DOI-enabled PET system designs.

physics.med-ph

The Development of a Preclinical Alpha Irradiation Platform with Versatile Control of Dose, Dose Rate, and Spatiotemporal Irradiation Patterns

Objectives. This study develops and validates a vacuum-based alpha irradiation platform to support preclinical radiobiology. We aim to demonstrate precise, independent control over incident energy, fluence rate, and spatiotemporal patterns, which are critical to the mechanisms underlying targeted alpha therapies and low-dose risk assessments. Approach. A vacuum-based system with a radioactive alpha source was designed and fabricated. The platform provides independent modulation of: (i) temporal patterns via a programmable gate valve; (ii) fluence rate across two orders of magnitude by varying source-to-aperture distance (57 to 381 mm); (iii) incident energy (0 to 4.6 MeV) using adjustable absorption layers; and (iv) spatial distributions via a 3D motion stage. Temporal precision was assessed via synchronized audio-electronic recordings. Fluence rates and energies were validated using CR-39 detectors and Monte Carlo (MC) simulations. Spatial precision was verified through programmed continuous and discrete trajectories. Main results. Validation experiments demonstrated high system fidelity. Measured irradiation durations deviated from programmed values by less than 0.3 s. Measured and computed fluence rates agreed within 3%. For energy validation, CR-39 track diameters matched MC model predictions within one standard deviation. Recorded spatial patterns and dimensions aligned well with programmed trajectories. Significance. We successfully validated a versatile vacuum-based platform that overcomes energy-degradation constraints of gas-filled systems. By providing multi-parametric control over alpha-particle delivery, this system enables systematic investigation into how energy, dose rate, and spatiotemporal patterns influence radiobiological responses. This platform is poised to optimize targeted alpha therapies and refine radiation protection frameworks.

physics.med-ph

Advancements in Monte Carlo simulations with gMicroMC: reactive species build-up promotes radical-radical reactions at Flash dose rates

Ultra-high dose rate irradiations to water indicate an enhancement of radical-radical reactions, which could potentially correlate with the Flash effect. The purpose of this work was to extend gMicroMC to support multiple pulse simulations and Flash dose rates, and to investigate, in a pure water model, the mechanisms underlying the enhancement of radical-radical reactions under Flash conditions. gMicroMC, a GPU-based Monte Carlo track-structure algorithm, was extended to simulate multiple pulses. Pure water was exposed to multiple 70 MeV protons pulses delivering up to 20 Gy. The pulse dose rate was set to 2*10^5 and 10^6 Gy/s, while the average dose rate ranged from 0.01 to 100000 Gy/s. The G-values of H2O2 were used to monitor the influence of dose rate on radical-radical reactions. The multiple pulse extension of gMicroMC was validated against Kinetiscope. Multiple pulse simulations indicated an average dose rate threshold. Below it, complete radical depletion occurred within the pulses, leading to constant G-values. Above it, reactive species accumulated throughout the irradiation, resulting in an increase of radical-radical reactions and thus the G-values of H2O2. The average dose rate thresholds were in the order of 10 and 100 Gy/s for pulse dose rates of 2*10^5 and 10^6 Gy/s, respectively. At ultra-high dose rates, the brief intervals between pulses led to a reactive species build-up, which enhanced radical-radical reactions. This build-up is more likely to promote radical-radical reactions than the inter-track mechanism. The advancements in gMicroMC provide a sophisticated tool to study chemical dose rate dependencies.

physics.med-ph

New Insights into Automatic Treatment Planning for Cancer Radiotherapy Using Explainable Artificial Intelligence

Objective: This study aims to uncover the opaque decision-making process of an artificial intelligence (AI) agent for automatic treatment planning. Approach: We examined a previously developed AI agent based on the Actor-Critic with Experience Replay (ACER) network, which automatically tunes treatment planning parameters (TPPs) for inverse planning in prostate cancer intensity modulated radiotherapy. We selected multiple checkpoint ACER agents from different stages of training and applied an explainable AI (EXAI) method to analyze the attribution from dose-volume histogram (DVH) inputs to TPP-tuning decisions. We then assessed each agent's planning efficacy and efficiency and evaluated their policy and final TPP tuning spaces. Combining these analyses, we systematically examined how ACER agents generated high-quality treatment plans in response to different DVH inputs. Results: Attribution analysis revealed that ACER agents progressively learned to identify dose-violation regions from DVH inputs and promote appropriate TPP-tuning actions to mitigate them. Organ-wise similarities between DVH attributions and dose-violation reductions ranged from 0.25 to 0.5 across tested agents. Agents with stronger attribution-violation similarity required fewer tuning steps (~12-13 vs. 22), exhibited a more concentrated TPP-tuning space with lower entropy (~0.3 vs. 0.6), converged on adjusting only a few TPPs, and showed smaller discrepancies between practical and theoretical tuning steps. Putting together, these findings indicate that high-performing ACER agents can effectively identify dose violations from DVH inputs and employ a global tuning strategy to achieve high-quality treatment planning, much like skilled human planners. Significance: Better interpretability of the agent's decision-making process may enhance clinician trust and inspire new strategies for automatic treatment planning.

physics.med-ph

Actor Critic with Experience Replay-based automatic treatment planning for prostate cancer intensity modulated radiotherapy

Background: Real-time treatment planning in IMRT is challenging due to complex beam interactions. AI has improved automation, but existing models require large, high-quality datasets and lack universal applicability. Deep reinforcement learning (DRL) offers a promising alternative by mimicking human trial-and-error planning. Purpose: Develop a stochastic policy-based DRL agent for automatic treatment planning with efficient training, broad applicability, and robustness against adversarial attacks using Fast Gradient Sign Method (FGSM). Methods: Using the Actor-Critic with Experience Replay (ACER) architecture, the agent tunes treatment planning parameters (TPPs) in inverse planning. Training is based on prostate cancer IMRT cases, using dose-volume histograms (DVHs) as input. The model is trained on a single patient case, validated on two independent cases, and tested on 300+ plans across three datasets. Plan quality is assessed using ProKnow scores, and robustness is tested against adversarial attacks. Results: Despite training on a single case, the model generalizes well. Before ACER-based planning, the mean plan score was 6.20$\pm$1.84; after, 93.09% of cases achieved a perfect score of 9, with a mean of 8.93$\pm$0.27. The agent effectively prioritizes optimal TPP tuning and remains robust against adversarial attacks. Conclusions: The ACER-based DRL agent enables efficient, high-quality treatment planning in prostate cancer IMRT, demonstrating strong generalizability and robustness.

physics.med-ph

Nucleon strange $s\bar s$ asymmetry to the $Λ/\barΛ$ fragmentation

The difference between the $Λ$ and $\bar Λ$ longitudinal spin transfers in the semi-inclusive deep inelastic scattering process is intensively studied. The study is performed in the current fragmentation region, by considering the intermediate hyperon decay processes and sea quark fragmentation processes, while the strange sea $s\bar s$ asymmetry in the nucleon is taken into account. The calculation in the light-cone quark-diquark model shows that the strange sea asymmetry gives a proper trend to the difference between the $Λ$ and $\bar Λ$ longitudinal spin transfers. When considering the nonzero final hadron transverse momentum, our results can explain the COMPASS data reasonably. The nonzero final hadron transverse momentum is interpreted as a natural constraint to the final hadron $z$ range where the longitudinal spin transfer is more sensitive to the strange sea $s\bar s$ asymmetry.

hep-ph

Quark to $Λ$-hyperon spin transfers in the current-fragmentation region

We perform a study on the struck quark to the $Λ$-hyperon fragmentation processes by taking into account the anti-quark fragmentations and intermediate decays from other hyperons. We concentrate on how the longitudinally polarized quark fragments to the longitudinally polarized $Λ$, how unpolarized quark and anti-quark fragment to the unpolarized $Λ$, and how quark and anti-quark fragment to the $Λ$ through the intermediate decay processes. We calculate the effective fragmentation functions in the light-cone SU(6) quark-spectator-diquark model via the Gribov-Lipatov relation, with the Melosh-Wigner rotation effect also included. The calculated results are in reasonable agreement with the HERMES semi-inclusive $ep$ experimental data and the OPAL and ALEPH $e^{+}e^{-}$ annihilation experimental data.

hep-ph

Octet Quark Contents from SU(3) Flavor Symmetry

With the parametrization of parton distribution functions (PDFs) of the proton by Soffer \textit{et al.}, we extend the valence quark contents to other octet baryons by utilizing SU(3) flavor symmetry. We find the method practically useful. Fragmentation functions (FFs) are further obtained through the phenomenological Gribov-Lipatov relation at the $x \to 1$ region. Our results are compared with different models, and these different predictions can be discriminated by upcoming experiments.

hep-ph