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Yuki Ishiguro

Publications and source records attributed to Yuki Ishiguro.

7 recordsLinked to original sources

Floquet Driving of Enzymatic Reactions: Counting Statistics and Long-Time Currents

Technologies for artificially controlling chemical reaction systems, such as optogenetics, are rapidly advancing, making it increasingly important to understand reaction dynamics under time-dependent control. When the modulation of reaction rates is periodic in time, the Floquet formalism provides a systematic framework. We develop a Floquet theory for classical stochastic processes that enables the calculation of the current and its counting statistics under such periodic modulation. In particular, we formulate the theory in terms of a counting field and derive general expressions for the first cumulant and the corresponding current. The current is expressed using the effective Floquet generator and the kicked state, and we further obtain general asymptotic expressions for the current in both the high- and low-frequency regimes. As a concrete example to test our analytical expressions, we then apply the results to discrete Floquet driving -- a non-perturbative, stepwise protocol. The setup is motivated by a biochemical system known as cyclic adenosine monophosphate (cAMP) production, which is an enzymatic reaction activated and inhibited by G-proteins. This is formulated as a discretely driven Michaelis--Menten-type reaction model, in which the catalytic activity is switched on and off abruptly in time, and we obtain analytical expressions and numerical results showing how periodic switching of reaction rates generates a long-time product current. In particular, in the high-frequency limit, we show that the effect of the periodic driving can be interpreted through an effective modification of the chemical reaction rates. These results provide a basis for Floquet analysis of periodically driven chemical reactions.

cond-mat.stat-mech

Asymmetric simple exclusion process with tree-like network branches

The asymmetric simple exclusion process (ASEP) is a fundamental stochastic model describing asymmetric many-particle diffusion with hard-core interactions on a one-dimensional lattice, and has been widely applied in the study of nonequilibrium transport phenomena. Motivated by the modeling of proton transport along oxygen networks in proton-conducting solid oxides, we extend the ASEP to a model defined on a one-dimensional backbone lattice with tree-like network branches. We derive the exact stationary distribution of this network ASEP and investigate its transport properties. By considering two representative network geometries for which physical quantities can be expressed in terms of certain hypergeometric series, we elucidate how the network geometry influences transport properties.

cond-mat.stat-mech

Exact analysis of the two-dimensional asymmetric simple exclusion process with attachment and detachment of particles

The asymmetric simple exclusion process (ASEP) is a paradigmatic driven-diffusive system that describes the asymmetric diffusion of particles with hardcore interactions in a lattice. Although the ASEP is known as an exactly solvable model, most exact results are limited to one-dimensional systems. Recently, the exact steady state in the multi-dimensional ASEP has been proposed [1]. The research focused on the situation where the number of particles is conserved. In this paper, we consider the two-dimensional ASEP with the attachment and detachment of particles (ASEP-LK), where particle number conservation is violated. By employing the result in Ref. [1], we construct the exact steady state of the ASEP-LK and reveal its properties through the exact computation of physical quantities.

cond-mat.stat-mech

Exact steady states in the asymmetric simple exclusion process beyond one dimension

The asymmetric simple exclusion process (ASEP) is a paradigmatic nonequilibrium many-body system that describes the asymmetric random walk of particles with exclusion interactions in a lattice. Although the ASEP is recognized as an exactly solvable model, most of the exact results obtained so far are limited to one-dimensional systems. Here, we construct the exact steady states of the ASEP with closed and periodic boundary conditions in arbitrary dimensions. This is achieved through the concept of transition decomposition, which enables the treatment of the multi-dimensional ASEP as a composite of the one-dimensional ASEPs.

cond-mat.stat-mech

Asymmetry-induced delocalization transition in the integrable non-Hermitian spin chain

The emergence of quasiparticles is a universal property in integrable systems. String-type quasiparticles, which are characterized by the string solutions of Bethe equations, play fundamental roles in the analysis of their physics. Through an investigation of the Bethe equations in the asymmetric simple exclusion process, we reveal the existence of string solutions in the presence of non-Hermiticity resulting from asymmetrical hopping. Because of the non-Hermiticity, the string solutions exhibit exotic properties such as the complexification of the center of string solutions and the delocalization of Bethe quantum numbers. In addition, we find the picture of string-type quasiparticles collapses in the strong asymmetry regime. The collapse of string solutions characterizes the transition of eigenstates from bound states to scattering states.

cond-mat.stat-mech

Multi-Quantum Dark Solitons in One-Dimensional Bose Gas

Quantum and classical integrable systems share common mathematical structures, and the phenomena appearing in them are interrelated. Solitons, which universally appear in classical integrable systems, also appear in quantum integrable systems. Here, we consider quantum-classical correspondence in a one-dimensional Bose gas with repulsive delta-function interaction and present quantum states corresponding to multi-dark solitons. Using an exact method, we compute the time evolution of the density profile in the multi-quantum dark soliton states. Localized solitary waves that behave like classical dark solitons are observed in the density profile. We observe collisions of quantum dark solitons and show that they exhibit the properties of classical solitons: stability against scatterings and position shifts due to interactions.

cond-mat.quant-gas

Burgers equation with finite particle correction of the asymmetric simple exclusion process derived from the derivative nonlinear Schrödinger equation

We investigate the dynamics of the asymmetric simple exclusion process (ASEP) on a ring. The ASEP is equivalent to the derivative nonlinear Schrödinger equation (DNLS), which is integrable quantum field theory, in the continuous limit. We derive the Burgers equation with finite particle correction from the DNLS and numerically confirm that the obtained Burgers equation describes the dynamics of the ASEP at small numbers of particles better than the conventional Burgers equation.

cond-mat.stat-mech