arXiv subjects

Yulong Xiao

Publications and source records attributed to Yulong Xiao.

4 recordsLinked to original sources

arXiv2026

Synonymous Codon Usage Bias Overrides Phylogeny to Reflect Convergent Frond Architecture in a Rapidly Radiating Fern Family Thelypteridaceae

Convergent evolution provides powerful evidence for natural selection, yet its molecular basis is typically sought in protein-coding amino acid substitutions. Whether adaptive pressures can drive the convergent evolution of synonymous codon usage bias (CUB) to override phylogenetic history remains a fundamental question. Here, we investigate this within the rapidly radiating fern family Thelypteridaceae by establishing a comparative framework that integrates chloroplast phylogenomics with dimensionality reduction of codon usage, morphological data, and divergence time estimation. Our results reveal that chloroplast CUB patterns are strikingly incongruent with the phylogeny of this family. Instead, they partition species into distinct clusters that strongly correlate with a convergently evolved morphological trait, lamina base architecture, a key adaptation whose radiation we date to the early Neogene. This convergent molecular signal is driven by a specific subset of photosynthesis-related genes (ndhJ, psaA, and psbD), which exhibit a high density of type-specific, third-position codon substitutions. These findings demonstrate that CUB can serve as a powerful, quantifiable indicator of adaptive history, revealing a cryptic layer of molecular convergence linked to the regulation of protein synthesis. Our work providing a new framework for uncovering adaptive histories obscured by complex evolutionary processes.

q-bio.PE↗

arXiv2025

U-Net-Like Spiking Neural Networks for Single Image Dehazing

Image dehazing is a critical challenge in computer vision, essential for enhancing image clarity in hazy conditions. Traditional methods often rely on atmospheric scattering models, while recent deep learning techniques, specifically Convolutional Neural Networks (CNNs) and Transformers, have improved performance by effectively analyzing image features. However, CNNs struggle with long-range dependencies, and Transformers demand significant computational resources. To address these limitations, we propose DehazeSNN, an innovative architecture that integrates a U-Net-like design with Spiking Neural Networks (SNNs). DehazeSNN captures multi-scale image features while efficiently managing local and long-range dependencies. The introduction of the Orthogonal Leaky-Integrate-and-Fire Block (OLIFBlock) enhances cross-channel communication, resulting in superior dehazing performance with reduced computational burden. Our extensive experiments show that DehazeSNN is highly competitive to state-of-the-art methods on benchmark datasets, delivering high-quality haze-free images with a smaller model size and less multiply-accumulate operations. The proposed dehazing method is publicly available at https://github.com/HaoranLiu507/DehazeSNN.

cs.CV↗

arXiv2025

THE-Tree: Can Tracing Historical Evolution Enhance Scientific Verification and Reasoning?

Large Language Models (LLMs) are accelerating scientific idea generation, but rigorously evaluating these numerous, often superficial, AI-generated propositions for novelty and factual accuracy is a critical bottleneck; manual verification is too slow. Existing validation methods are inadequate: LLMs as standalone verifiers may hallucinate and lack domain knowledge (our findings show 60% unawareness of relevant papers in specific domains), while traditional citation networks lack explicit causality and narrative surveys are unstructured. This underscores a core challenge: the absence of structured, verifiable, and causally-linked historical data of scientific evolution.To address this,we introduce \textbf{THE-Tree} (\textbf{T}echnology \textbf{H}istory \textbf{E}volution Tree), a computational framework that constructs such domain-specific evolution trees from scientific literature. THE-Tree employs a search algorithm to explore evolutionary paths. During its node expansion, it utilizes a novel "Think-Verbalize-Cite-Verify" process: an LLM proposes potential advancements and cites supporting literature. Critically, each proposed evolutionary link is then validated for logical coherence and evidential support by a recovered natural language inference mechanism that interrogates the cited literature, ensuring that each step is grounded. We construct and validate 88 THE-Trees across diverse domains and release a benchmark dataset including up to 71k fact verifications covering 27k papers to foster further research. Experiments demonstrate that i) in graph completion, our THE-Tree improves hit@1 by 8% to 14% across multiple models compared to traditional citation networks; ii) for predicting future scientific developments, it improves hit@1 metric by nearly 10%; and iii) when combined with other methods, it boosts the performance of evaluating important scientific papers by almost 100%.

cs.AI↗

arXiv2023

Correlation-induced symmetry-broken states in large-angle twisted bilayer graphene on MoS2

Strongly correlated states are commonly emerged in twisted bilayer graphene (TBG) with magic-angle, where the electron-electron (e-e) interaction U becomes prominent relative to the small bandwidth W of the nearly flat band. However, the stringent requirement of this magic angle makes the sample preparation and the further application facing great challenges. Here, using scanning tunneling microscopy (STM) and spectroscopy (STS), we demonstrate that the correlation-induced symmetry-broken states can also be achieved in a 3.45° TBG, via engineering this non-magic-angle TBG into regimes of U/W > 1. We enhance the e-e interaction through controlling the microscopic dielectric environment by using a MoS2 substrate. Simultaneously, the bandwidth of the low-energy van Hove singularity (VHS) peak is reduced by enhancing the interlayer coupling via STM tip modulation. When partially filled, the VHS peak exhibits a giant splitting into two states flanked the Fermi level and shows a symmetry-broken LDOS distribution with a stripy charge order, which confirms the existence of strong correlation effect in our 3.45° TBG. Our result paves the way for the study and application of the correlation physics in TBGs with a wider range of twist angle.

cond-mat.mes-hall↗