arXiv subjects

Yun Peng

Publications and source records attributed to Yun Peng.

At least 37 records · Page 2Linked to original sources

arXiv2026

TimeGNN-Augmented Hybrid-Action MARL for Fine-Grained Task Partitioning and Energy-Aware Offloading in MEC

With the rapid growth of IoT devices and latency-sensitive applications, the demand for both real-time and energy-efficient computing has surged, placing significant pressure on traditional cloud computing architectures. Mobile edge computing (MEC), an emerging paradigm, effectively alleviates the load on cloud centers and improves service quality by offloading computing tasks to edge servers closer to end users. However, the limited computing resources, non-continuous power provisioning (e.g., battery-powered nodes), and highly dynamic systems of edge servers complicate efficient task scheduling and resource allocation. To address these challenges, this paper proposes a multi-agent deep reinforcement learning algorithm, TG-DCMADDPG, and constructs a collaborative computing framework for multiple edge servers, aiming to achieve joint optimization of fine-grained task partitioning and offloading. This approach incorporates a temporal graph neural network (TimeGNN) to model and predict time series of multi-dimensional server state information, thereby reducing the frequency of online interactions and improving policy predictability. Furthermore, a multi-agent deterministic policy gradient algorithm (DC-MADDPG) in a discrete-continuous hybrid action space is introduced to collaboratively optimize task partitioning ratios, transmission power, and priority scheduling strategies. Extensive simulation experiments confirm that TG-DCMADDPG achieves markedly faster policy convergence, superior energy-latency optimization, and higher task completion rates compared with existing state-of-the-art methods, underscoring its robust scalability and practical effectiveness in dynamic and constrained MEC scenarios.

cs.LG↗

arXiv2025

Bizard: A Community-Driven Platform for Accelerating and Enhancing Biomedical Data Visualization

Biomedical research increasingly relies on heterogeneous, high-dimensional datasets, yet effective visualization remains hindered by fragmented code resources, steep programming barriers, and limited domain-specific guidance. Bizard is an open-source visualization code repository engineered to streamline data analysis in biomedical research. It aggregates a diverse array of executable visualization scripts, empowering researchers to select and tailor optimal graphical methods for their specific investigative demands. The platform features an intuitive interface equipped with sophisticated browsing and filtering capabilities, exhaustive tutorials, and interactive discussion forums that foster knowledge dissemination. Through its community-driven paradigm, Bizard promotes continual refinement and functional expansion, establishing itself as an essential resource for elevating biomedical data visualization and analytical standards. By harnessing Bizard's infrastructure, researchers can augment their visualization proficiency, propel methodological progress, and enhance interpretive rigor, ultimately accelerating precision medicine and personalized therapeutics. Bizard is freely accessible at https://openbiox.github.io/Bizard/.

q-bio.GN↗

arXiv2025

\texttt{ReMind}: Understanding Deductive Code Reasoning in LLMs

Large Language Models (LLMs) have achieved remarkable progress in code-related tasks. Despite their advancement, empirical evidence reveals that they still struggle with \emph{deductive code reasoning}, the ability to reason about the program execution process. While prior studies have recognized this limitation, the underlying causes remain largely underexplored. In this paper, we begin by presenting a comprehensive empirical study that reveals three key challenges undermining deductive code reasoning: (1) an intrinsic gap between generation and reasoning abilities, (2) a consistent bias towards code sources, and (3) weak zero-shot generalization on complex benchmarks. In light of these challenges, we propose \texttt{ReMind}, a multi-agent framework composed of \texttt{Mutator}, \texttt{Executor}, and \texttt{Inspector}. The \texttt{Mutator} generates code variants to mitigate bias towards code sources, the \texttt{Executor} traces variable states step-by-step to expose inconsistency, and the \texttt{Inspector} identifies problematic reasoning steps and provides control-flow refinement to bridge the intrinsic reasoning gap. Through their coordinated collaboration, \texttt{ReMind} systematically identifies and refines reasoning flaws, achieving outstanding performance and enabling robust zero-shot generalization. Extensive experiments on two benchmarks with five LLMs demonstrate the superior advantages of \texttt{ReMind} compared to baseline approaches in deductive code reasoning.

cs.PL↗

arXiv2025

ComboBench: Can LLMs Manipulate Physical Devices to Play Virtual Reality Games?

Virtual Reality (VR) games require players to translate high-level semantic actions into precise device manipulations using controllers and head-mounted displays (HMDs). While humans intuitively perform this translation based on common sense and embodied understanding, whether Large Language Models (LLMs) can effectively replicate this ability remains underexplored. This paper introduces a benchmark, ComboBench, evaluating LLMs' capability to translate semantic actions into VR device manipulation sequences across 262 scenarios from four popular VR games: Half-Life: Alyx, Into the Radius, Moss: Book II, and Vivecraft. We evaluate seven LLMs, including GPT-3.5, GPT-4, GPT-4o, Gemini-1.5-Pro, LLaMA-3-8B, Mixtral-8x7B, and GLM-4-Flash, compared against annotated ground truth and human performance. Our results reveal that while top-performing models like Gemini-1.5-Pro demonstrate strong task decomposition capabilities, they still struggle with procedural reasoning and spatial understanding compared to humans. Performance varies significantly across games, suggesting sensitivity to interaction complexity. Few-shot examples substantially improve performance, indicating potential for targeted enhancement of LLMs' VR manipulation capabilities. We release all materials at https://sites.google.com/view/combobench.

cs.CL↗

arXiv2025

A Flow Model with Low-Rank Transformers for Incomplete Multimodal Survival Analysis

In recent years, multimodal medical data-based survival analysis has attracted much attention. However, real-world datasets often suffer from the problem of incomplete modality, where some patient modality information is missing due to acquisition limitations or system failures. Existing methods typically infer missing modalities directly from observed ones using deep neural networks, but they often ignore the distributional discrepancy across modalities, resulting in inconsistent and unreliable modality reconstruction. To address these challenges, we propose a novel framework that combines a low-rank Transformer with a flow-based generative model for robust and flexible multimodal survival prediction. Specifically, we first formulate the concerned problem as incomplete multimodal survival analysis using the multi-instance representation of whole slide images (WSIs) and genomic profiles. To realize incomplete multimodal survival analysis, we propose a class-specific flow for cross-modal distribution alignment. Under the condition of class labels, we model and transform the cross-modal distribution. By virtue of the reversible structure and accurate density modeling capabilities of the normalizing flow model, the model can effectively construct a distribution-consistent latent space of the missing modality, thereby improving the consistency between the reconstructed data and the true distribution. Finally, we design a lightweight Transformer architecture to model intra-modal dependencies while alleviating the overfitting problem in high-dimensional modality fusion by virtue of the low-rank Transformer. Extensive experiments have demonstrated that our method not only achieves state-of-the-art performance under complete modality settings, but also maintains robust and superior accuracy under the incomplete modalities scenario.

cs.CV↗

arXiv2025

PEACE: Towards Efficient Project-Level Efficiency Optimization via Hybrid Code Editing

Large Language Models (LLMs) have demonstrated significant capability in code generation, but their potential in code efficiency optimization remains underexplored. Previous LLM-based code efficiency optimization approaches exclusively focus on function-level optimization and overlook interaction between functions, failing to generalize to real-world development scenarios. Code editing techniques show great potential for conducting project-level optimization, yet they face challenges associated with invalid edits and suboptimal internal functions. To address these gaps, we propose Peace, a novel hybrid framework for Project-level code Efficiency optimization through Automatic Code Editing, which also ensures the overall correctness and integrity of the project. Peace integrates three key phases: dependency-aware optimizing function sequence construction, valid associated edits identification, and efficiency optimization editing iteration. To rigorously evaluate the effectiveness of Peace, we construct PeacExec, the first benchmark comprising 146 real-world optimization tasks from 47 high-impact GitHub Python projects, along with highly qualified test cases and executable environments. Extensive experiments demonstrate Peace's superiority over the state-of-the-art baselines, achieving a 69.2% correctness rate (pass@1), +46.9% opt rate, and 0.840 speedup in execution efficiency. Notably, our Peace outperforms all baselines by significant margins, particularly in complex optimization tasks with multiple functions. Moreover, extensive experiments are also conducted to validate the contributions of each component in Peace, as well as the rationale and effectiveness of our hybrid framework design.

cs.SE↗

arXiv2025

iCodeReviewer: Improving Secure Code Review with Mixture of Prompts

Code review is an essential process to ensure the quality of software that identifies potential software issues at an early stage of software development. Among all software issues, security issues are the most important to identify, as they can easily lead to severe software crashes and service disruptions. Recent research efforts have been devoted to automated approaches to reduce the manual efforts required in the secure code review process. Despite the progress, current automated approaches on secure code review, including static analysis, deep learning models, and prompting approaches, still face the challenges of limited precision and coverage, and a lack of comprehensive evaluation. To mitigate these challenges, we propose iCodeReviewer, which is an automated secure code review approach based on large language models (LLMs). iCodeReviewer leverages a novel mixture-of-prompts architecture that incorporates many prompt experts to improve the coverage of security issues. Each prompt expert is a dynamic prompt pipeline to check the existence of a specific security issue. iCodeReviewer also implements an effective routing algorithm to activate only necessary prompt experts based on the code features in the input program, reducing the false positives induced by LLM hallucination. Experiment results in our internal dataset demonstrate the effectiveness of iCodeReviewer in security issue identification and localization with an F1 of 63.98%. The review comments generated by iCodeReviewer also achieve a high acceptance rate up to 84% when it is deployed in production environments.

cs.SE↗

arXiv2025

Metamorphic Testing for Audio Content Moderation Software

The rapid growth of audio-centric platforms and applications such as WhatsApp and Twitter has transformed the way people communicate and share audio content in modern society. However, these platforms are increasingly misused to disseminate harmful audio content, such as hate speech, deceptive advertisements, and explicit material, which can have significant negative consequences (e.g., detrimental effects on mental health). In response, researchers and practitioners have been actively developing and deploying audio content moderation tools to tackle this issue. Despite these efforts, malicious actors can bypass moderation systems by making subtle alterations to audio content, such as modifying pitch or inserting noise. Moreover, the effectiveness of modern audio moderation tools against such adversarial inputs remains insufficiently studied. To address these challenges, we propose MTAM, a Metamorphic Testing framework for Audio content Moderation software. Specifically, we conduct a pilot study on 2000 audio clips and define 14 metamorphic relations across two perturbation categories: Audio Features-Based and Heuristic perturbations. MTAM applies these metamorphic relations to toxic audio content to generate test cases that remain harmful while being more likely to evade detection. In our evaluation, we employ MTAM to test five commercial textual content moderation software and an academic model against three kinds of toxic content. The results show that MTAM achieves up to 38.6%, 18.3%, 35.1%, 16.7%, and 51.1% error finding rates (EFR) when testing commercial moderation software provided by Gladia, Assembly AI, Baidu, Nextdata, and Tencent, respectively, and it obtains up to 45.7% EFR when testing the state-of-the-art algorithms from the academy.

cs.SE↗

arXiv2025

CleanPose: Category-Level Object Pose Estimation via Causal Learning and Knowledge Distillation

Category-level object pose estimation aims to recover the rotation, translation and size of unseen instances within predefined categories. In this task, deep neural network-based methods have demonstrated remarkable performance. However, previous studies show they suffer from spurious correlations raised by "unclean" confounders in models, hindering their performance on novel instances with significant variations. To address this issue, we propose CleanPose, a novel approach integrating causal learning and knowledge distillation to enhance category-level pose estimation. To mitigate the negative effect of unobserved confounders, we develop a causal inference module based on front-door adjustment, which promotes unbiased estimation by reducing potential spurious correlations. Additionally, to further improve generalization ability, we devise a residual-based knowledge distillation method that has proven effective in providing comprehensive category information guidance. Extensive experiments across multiple benchmarks (REAL275, CAMERA25 and HouseCat6D) hightlight the superiority of proposed CleanPose over state-of-the-art methods. Code will be available at https://github.com/chrislin0621/CleanPose.

cs.CV↗

arXiv2025

A Closer Look into Transformer-Based Code Intelligence Through Code Transformation: Challenges and Opportunities

Transformer-based models have demonstrated state-of-the-art performance in many intelligent coding tasks such as code comment generation and code completion. Previous studies show that deep learning models are sensitive to the input variations, but few studies have systematically studied the robustness of Transformer under perturbed input code. In this work, we empirically study the effect of semantic-preserving code transformation on the performance of Transformer. Specifically, 24 and 27 code transformation strategies are implemented for two popular programming languages, Java and Python, respectively. For facilitating analysis, the strategies are grouped into five categories: block transformation, insertion/deletion transformation, grammatical statement transformation, grammatical token transformation, and identifier transformation. Experiments on three popular code intelligence tasks, including code completion, code summarization and code search, demonstrate insertion/deletion transformation and identifier transformation show the greatest impact on the performance of Transformer. Our results also suggest that Transformer based on abstract syntax trees (ASTs) shows more robust performance than the model based on only code sequence under most code transformations. Besides, the design of positional encoding can impact the robustness of Transformer under code transformation. Based on our findings, we distill some insights about the challenges and opportunities for Transformer-based code intelligence.

cs.SE↗

arXiv2025

Label-efficient multi-organ segmentation with a diffusion model

Accurate segmentation of multiple organs in Computed Tomography (CT) images plays a vital role in computer-aided diagnosis systems. While various supervised learning approaches have been proposed recently, these methods heavily depend on a large amount of high-quality labeled data, which are expensive to obtain in practice. To address this challenge, we propose a label-efficient framework using knowledge transfer from a pre-trained diffusion model for CT multi-organ segmentation. Specifically, we first pre-train a denoising diffusion model on 207,029 unlabeled 2D CT slices to capture anatomical patterns. Then, the model backbone is transferred to the downstream multi-organ segmentation task, followed by fine-tuning with few labeled data. In fine-tuning, two fine-tuning strategies, linear classification and fine-tuning decoder, are employed to enhance segmentation performance while preserving learned representations. Quantitative results show that the pre-trained diffusion model is capable of generating diverse and realistic 256x256 CT images (Fréchet inception distance (FID): 11.32, spatial Fréchet inception distance (sFID): 46.93, F1-score: 73.1%). Compared to state-of-the-art methods for multi-organ segmentation, our method achieves competitive performance on the FLARE 2022 dataset, particularly in limited labeled data scenarios. After fine-tuning with 1% and 10% labeled data, our method achieves dice similarity coefficients (DSCs) of 71.56% and 78.51%, respectively. Remarkably, the method achieves a DSC score of 51.81% using only four labeled CT slices. These results demonstrate the efficacy of our approach in overcoming the limitations of supervised learning approaches that is highly dependent on large-scale labeled data.

cs.CV↗

arXiv2025

SAM-LAD: Segment Anything Model Meets Zero-Shot Logic Anomaly Detection

Visual anomaly detection is vital in real-world applications, such as industrial defect detection and medical diagnosis. However, most existing methods focus on local structural anomalies and fail to detect higher-level functional anomalies under logical conditions. Although recent studies have explored logical anomaly detection, they can only address simple anomalies like missing or addition and show poor generalizability due to being heavily data-driven. To fill this gap, we propose SAM-LAD, a zero-shot, plug-and-play framework for logical anomaly detection in any scene. First, we obtain a query image's feature map using a pre-trained backbone. Simultaneously, we retrieve the reference images and their corresponding feature maps via the nearest neighbor search of the query image. Then, we introduce the Segment Anything Model (SAM) to obtain object masks of the query and reference images. Each object mask is multiplied with the entire image's feature map to obtain object feature maps. Next, an Object Matching Model (OMM) is proposed to match objects in the query and reference images. To facilitate object matching, we further propose a Dynamic Channel Graph Attention (DCGA) module, treating each object as a keypoint and converting its feature maps into feature vectors. Finally, based on the object matching relations, an Anomaly Measurement Model (AMM) is proposed to detect objects with logical anomalies. Structural anomalies in the objects can also be detected. We validate our proposed SAM-LAD using various benchmarks, including industrial datasets (MVTec Loco AD, MVTec AD), and the logical dataset (DigitAnatomy). Extensive experimental results demonstrate that SAM-LAD outperforms existing SoTA methods, particularly in detecting logical anomalies.

cs.CV↗

arXiv2025

COFFE: A Code Efficiency Benchmark for Code Generation

Code generation has largely improved development efficiency in the era of large language models (LLMs). With the ability to follow instructions, current LLMs can be prompted to generate code solutions given detailed descriptions in natural language. Many research efforts are being devoted to improving the correctness of LLM-generated code, and many benchmarks are proposed to evaluate the correctness comprehensively. Despite the focus on correctness, the time efficiency of LLM-generated code solutions is under-explored. Current correctness benchmarks are not suitable for time efficiency evaluation since their test cases cannot well distinguish the time efficiency of different code solutions. Besides, the current execution time measurement is not stable and comprehensive, threatening the validity of the time efficiency evaluation. To address the challenges in the time efficiency evaluation of code generation, we propose COFFE, a code generation benchmark for evaluating the time efficiency of LLM-generated code solutions. COFFE contains 398 and 358 problems for function-level and file-level code generation, respectively. To improve the distinguishability, we design a novel stressful test case generation approach with contracts and two new formats of test cases to improve the accuracy of generation. For the time evaluation metric, we propose efficienct@k based on CPU instruction count to ensure a stable and solid comparison between different solutions. We evaluate 14 popular LLMs on COFFE and identify four findings. Based on the findings, we draw some implications for LLM researchers and software practitioners to facilitate future research and usage of LLMs in code generation.

cs.SE↗

arXiv2025

Distillation Learning Guided by Image Reconstruction for One-Shot Medical Image Segmentation

Traditional one-shot medical image segmentation (MIS) methods use registration networks to propagate labels from a reference atlas or rely on comprehensive sampling strategies to generate synthetic labeled data for training. However, these methods often struggle with registration errors and low-quality synthetic images, leading to poor performance and generalization. To overcome this, we introduce a novel one-shot MIS framework based on knowledge distillation, which allows the network to directly 'see' real images through a distillation process guided by image reconstruction. It focuses on anatomical structures in a single labeled image and a few unlabeled ones. A registration-based data augmentation network creates realistic, labeled samples, while a feature distillation module helps the student network learn segmentation from these samples, guided by the teacher network. During inference, the streamlined student network accurately segments new images. Evaluations on three public datasets (OASIS for T1 brain MRI, BCV for abdomen CT, and VerSe for vertebrae CT) show superior segmentation performance and generalization across different medical image datasets and modalities compared to leading methods. Our code is available at https://github.com/NoviceFodder/OS-MedSeg.

eess.IV↗

arXiv2024

PerfCodeGen: Improving Performance of LLM Generated Code with Execution Feedback

Large Language Models (LLMs) are widely adopted for assisting in software development tasks, yet their performance evaluations have narrowly focused on the functional correctness of generated code. Human programmers, however, require LLM-generated code to be not only correct but also optimally efficient. We propose PerfCodeGen, a training-free framework that enhances the performance of LLM-generated code by incorporating feedback based on runtime during test case execution into the self-refinement iterations. With PerfCodeGen, we achieve speedups for a significantly higher proportion of problems compared to using the base LLM with sophisticated prompting techniques. Applied to open language models like Phi-3-mini, PerfCodeGen achieves runtime efficiency comparable to prompting powerful closed models like GPT-4. We achieve state-of-the-art runtime efficiency on benchmarks such as HumanEval, MBPP, and APPS, frequently surpassing the ground truth reference solutions with PerfCodeGen using GPT-3.5 and GPT-4. Additionally, we demonstrate the effectiveness of our approach in enhancing code quality across a range of open LLMs of varying sizes including Phi-3-mini, Llama 3 8B, Mixtral 8x7B, Command R, and Llama 3 70B.

cs.SE↗

arXiv2024

Less Cybersickness, Please: Demystifying and Detecting Stereoscopic Visual Inconsistencies in Virtual Reality Apps

The quality of Virtual Reality (VR) apps is vital, particularly the rendering quality of the VR Graphical User Interface (GUI). Different from traditional 2D apps, VR apps create a 3D digital scene for users, by rendering two distinct 2D images for the user's left and right eyes, respectively. Stereoscopic visual inconsistency (denoted as "SVI") issues, however, undermine the rendering process of the user's brain, leading to user discomfort and even adverse health effects. Such issues commonly exist but remain underexplored. We conduct an empirical analysis on 282 SVI bug reports from 15 VR platforms, summarizing 15 types of manifestations. The empirical analysis reveals that automatically detecting SVI issues is challenging, mainly because: (1) lack of training data; (2) the manifestations of SVI issues are diverse, complicated, and often application-specific; (3) most accessible VR apps are closed-source commercial software. Existing pattern-based supervised classification approaches may be inapplicable or ineffective in detecting the SVI issues. To counter these challenges, we propose an unsupervised black-box testing framework named StereoID to identify the stereoscopic visual inconsistencies, based only on the rendered GUI states. StereoID generates a synthetic right-eye image based on the actual left-eye image and computes distances between the synthetic right-eye image and the actual right-eye image to detect SVI issues. We propose a depth-aware conditional stereo image translator to power the image generation process, which captures the expected perspective shifts between left-eye and right-eye images. We build a large-scale unlabeled VR stereo screenshot dataset with larger than 171K images from 288 real-world VR apps for experiments. After substantial experiments, StereoID demonstrates superior performance for detecting SVI issues in both user reports and wild VR apps.

cs.SE↗

arXiv2024

Privacy Amplification via Shuffling: Unified, Simplified, and Tightened

The shuffle model of differential privacy provides promising privacy-utility balances in decentralized, privacy-preserving data analysis. However, the current analyses of privacy amplification via shuffling lack both tightness and generality. To address this issue, we propose the \emph{variation-ratio reduction} as a comprehensive framework for privacy amplification in both single-message and multi-message shuffle protocols. It leverages two new parameterizations: the total variation bounds of local messages and the probability ratio bounds of blanket messages, to determine indistinguishability levels. Our theoretical results demonstrate that our framework provides tighter bounds, especially for local randomizers with extremal probability design, where our bounds are exactly tight. Additionally, variation-ratio reduction complements parallel composition in the shuffle model, yielding enhanced privacy accounting for popular sampling-based randomizers employed in statistical queries (e.g., range queries, marginal queries, and frequent itemset mining). Empirical findings demonstrate that our numerical amplification bounds surpass existing ones, conserving up to $30\%$ of the budget for single-message protocols, $75\%$ for multi-message ones, and a striking $75\%$-$95\%$ for parallel composition. Our bounds also result in a remarkably efficient $\tilde{O}(n)$ algorithm that numerically amplifies privacy in less than $10$ seconds for $n=10^8$ users.

cs.CR↗

arXiv2024

Enhancing LLM-Based Coding Tools through Native Integration of IDE-Derived Static Context

Large Language Models (LLMs) have achieved remarkable success in code completion, as evidenced by their essential roles in developing code assistant services such as Copilot. Being trained on in-file contexts, current LLMs are quite effective in completing code for single source files. However, it is challenging for them to conduct repository-level code completion for large software projects that require cross-file information. Existing research on LLM-based repository-level code completion identifies and integrates cross-file contexts, but it suffers from low accuracy and limited context length of LLMs. In this paper, we argue that Integrated Development Environments (IDEs) can provide direct, accurate and real-time cross-file information for repository-level code completion. We propose IDECoder, a practical framework that leverages IDE native static contexts for cross-context construction and diagnosis results for self-refinement. IDECoder utilizes the rich cross-context information available in IDEs to enhance the capabilities of LLMs of repository-level code completion. We conducted preliminary experiments to validate the performance of IDECoder and observed that this synergy represents a promising trend for future exploration.

cs.SE↗