arXiv subjects

Yuni Susanti

Publications and source records attributed to Yuni Susanti.

13 recordsLinked to original sources

arXiv2026

The zbMATH Open Knowledge Graph: Tracing Centuries of Mathematical Research

We present the zbMATH Open Knowledge Graph, a large-scale RDF knowledge graph (KG) covering more than 250 years of mathematical scholarship. Unlike existing scholarly knowledge graphs that primarily capture bibliographic metadata and citation structures, the zbMATH Open KG integrates expert-curated semantic content, including reviews, keywords, subject classifications, software references, and disambiguated authorship. This combination of domain-specific representation of mathematical knowledge and extensive temporal coverage supports analyses that require fine-grained exploration of mathematical concepts, research fields, and scholarly relationships over time. The resulting graph comprises 34 million entities and 168 million RDF triples represented using established Semantic Web vocabularies, supporting interoperability and FAIR data principles. We further demonstrate its capabilities through query-driven historically grounded scholarly exploration use cases, illustrating how the knowledge graph can surface relationships and patterns that may be difficult to identify from bibliographic and citation information alone. The zbMATH Open KG provides an open semantic infrastructure for studying the development of mathematical knowledge and tracing scholarly connections across centuries of scholarship.

cs.DL↗

arXiv2026

Graph-Based Discovery of Mathematical Software Communities and Publication-to-Community Prediction

Research software forms distinct co-usage communities that span traditional disciplinary boundaries, yet the structure of these communities remains largely unexplored. We present a graph-based framework for discovering mathematical software communities and predicting their association with research publications. We construct a software co-usage network from publication-software relationships using a curated swMATH dataset and subsequently apply community detection method, revealing a heterogeneous landscape of mathematical software communities. We formulate publication-to-community mapping as a multi-label classification task and further investigate whether community membership can be predicted from lightweight scholarly metadata. Specifically, we compare two feature representations of scientific publications: Mathematics Subject Classification (MSC) and title-based embeddings. Across a range of models, structured MSC representation consistently provides a stronger precision-recall trade-off, demonstrating that structured domain metadata captures software-community structure more effectively than compressed title-only semantics in this setting. This work highlights the continuing value of structured scholarly metadata for large-scale research software discovery, classification and recommendation.

cs.IR↗

arXiv2026

Syntax Meets Semantics: Understanding Scientific Formulae

Scientific formulae are a fundamental component of scholarly communication, yet their dual nature -- as structured syntax and carriers of semantics -- remains underexplored in scholarly information retrieval. Although prior studies show that jointly modeling syntactic and semantic modalities improves retrieval performance, the relationship between their underlying representations has not been systematically investigated. In this work, we empirically study cross-modal correspondence between formula syntax and semantics. We find that their native representation spaces exhibit extremely weak observable correspondence despite strong latent correlation, indicating a substantial representation mismatch between the two modalities. We further evaluate whether this mismatch can be reduced using standard representation learning and alignment techniques. We represent syntactic structure using graph-based encoders and semantic information using text-based encoders, then apply contrastive learning to induce a shared representation space. Results show that the learned alignment substantially improves cross-modal retrieval, suggesting that explicit representation learning can recover correspondence absent from the original representation spaces.

cs.IR↗

arXiv2026

SemRepo: A Knowledge Graph for Research Software and Its Scholarly Ecosystem

We present SemRepo, an RDF knowledge graph comprising over 81 million triples describing nearly 200,000 GitHub repositories associated with scientific research. SemRepo captures repository-level metadata, such as contributors, issues, and programming languages, and interlinks this information with external scholarly knowledge graphs. In particular, repository authors are linked to their profiles in SemOpenAlex, repositories are connected to scholarly publications in LPWC, and research artifacts, such as datasets and experiments, are linked via MLSea-KG. This integration enables queries that span publications and their scholarly artifacts, which are typically fragmented across separate platforms. SemRepo supports analyses that are difficult to perform with existing resources in isolation, including provenance reconstruction across repositories and publications, as well as the systematic identification of risks to research reproducibility and software sustainability. By unifying research software with its scholarly context in a single graph, SemRepo provides an important infrastructure for large-scale analysis of software within the broader scientific research ecosystem.

cs.DL↗

arXiv2026

Do We Need Bigger Models for Science? Task-Aware Retrieval with Small Language Models

Scientific knowledge discovery increasingly relies on large language models, yet many existing scholarly assistants depend on proprietary systems with tens or hundreds of billions of parameters. Such reliance limits reproducibility and accessibility for the research community. In this work, we ask a simple question: do we need bigger models for scientific applications? Specifically, we investigate to what extent carefully designed retrieval pipelines can compensate for reduced model scale in scientific applications. We design a lightweight retrieval-augmented framework that performs task-aware routing to select specialized retrieval strategies based on the input query. The system further integrates evidence from full-text scientific papers and structured scholarly metadata, and employs compact instruction-tuned language models to generate responses with citations. We evaluate the framework across several scholarly tasks, focusing on scholarly question answering (QA), including single- and multi-document scenarios, as well as biomedical QA under domain shift and scientific text compression. Our findings demonstrate that retrieval and model scale are complementary rather than interchangeable. While retrieval design can partially compensate for smaller models, model capacity remains important for complex reasoning tasks. This work highlights retrieval and task-aware design as key factors for building practical and reproducible scholarly assistants.

cs.IR↗

arXiv2025

Optimizing Small Transformer-Based Language Models for Multi-Label Sentiment Analysis in Short Texts

Sentiment classification in short text datasets faces significant challenges such as class imbalance, limited training samples, and the inherent subjectivity of sentiment labels -- issues that are further intensified by the limited context in short texts. These factors make it difficult to resolve ambiguity and exacerbate data sparsity, hindering effective learning. In this paper, we evaluate the effectiveness of small Transformer-based models (i.e., BERT and RoBERTa, with fewer than 1 billion parameters) for multi-label sentiment classification, with a particular focus on short-text settings. Specifically, we evaluated three key factors influencing model performance: (1) continued domain-specific pre-training, (2) data augmentation using automatically generated examples, specifically generative data augmentation, and (3) architectural variations of the classification head. Our experiment results show that data augmentation improves classification performance, while continued pre-training on augmented datasets can introduce noise rather than boost accuracy. Furthermore, we confirm that modifications to the classification head yield only marginal benefits. These findings provide practical guidance for optimizing BERT-based models in resource-constrained settings and refining strategies for sentiment classification in short-text datasets.

cs.CL↗

arXiv2025

Bridging RDF Knowledge Graphs with Graph Neural Networks for Semantically-Rich Recommender Systems

Graph Neural Networks (GNNs) have substantially advanced the field of recommender systems. However, despite the creation of more than a thousand knowledge graphs (KGs) under the W3C standard RDF, their rich semantic information has not yet been fully leveraged in GNN-based recommender systems. To address this gap, we propose a comprehensive integration of RDF KGs with GNNs that utilizes both the topological information from RDF object properties and the content information from RDF datatype properties. Our main focus is an in-depth evaluation of various GNNs, analyzing how different semantic feature initializations and types of graph structure heterogeneity influence their performance in recommendation tasks. Through experiments across multiple recommendation scenarios involving multi-million-node RDF graphs, we demonstrate that harnessing the semantic richness of RDF KGs significantly improves recommender systems and lays the groundwork for GNN-based recommender systems for the Linked Open Data cloud. The code and data are available on our GitHub repository: https://github.com/davidlamprecht/rdf-gnn-recommendation

cs.IR↗

arXiv2025

Paths to Causality: Finding Informative Subgraphs Within Knowledge Graphs for Knowledge-Based Causal Discovery

Inferring causal relationships between variable pairs is crucial for understanding multivariate interactions in complex systems. Knowledge-based causal discovery -- which involves inferring causal relationships by reasoning over the metadata of variables (e.g., names or textual context) -- offers a compelling alternative to traditional methods that rely on observational data. However, existing methods using Large Language Models (LLMs) often produce unstable and inconsistent results, compromising their reliability for causal inference. To address this, we introduce a novel approach that integrates Knowledge Graphs (KGs) with LLMs to enhance knowledge-based causal discovery. Our approach identifies informative metapath-based subgraphs within KGs and further refines the selection of these subgraphs using Learning-to-Rank-based models. The top-ranked subgraphs are then incorporated into zero-shot prompts, improving the effectiveness of LLMs in inferring the causal relationship. Extensive experiments on biomedical and open-domain datasets demonstrate that our method outperforms most baselines by up to 44.4 points in F1 scores, evaluated across diverse LLMs and KGs. Our code and datasets are available on GitHub: https://github.com/susantiyuni/path-to-causality

cs.AI↗

arXiv2025

Can LLMs Leverage Observational Data? Towards Data-Driven Causal Discovery with LLMs

Causal discovery traditionally relies on statistical methods applied to observational data, often requiring large datasets and assumptions about underlying causal structures. Recent advancements in Large Language Models (LLMs) have introduced new possibilities for causal discovery by providing domain expert knowledge. However, it remains unclear whether LLMs can effectively process observational data for causal discovery. In this work, we explore the potential of LLMs for data-driven causal discovery by integrating observational data for LLM-based reasoning. Specifically, we examine whether LLMs can effectively utilize observational data through two prompting strategies: pairwise prompting and breadth first search (BFS)-based prompting. In both approaches, we incorporate the observational data directly into the prompt to assess LLMs' ability to infer causal relationships from such data. Experiments on benchmark datasets show that incorporating observational data enhances causal discovery, boosting F1 scores by up to 0.11 point using both pairwise and BFS LLM-based prompting, while outperforming traditional statistical causal discovery baseline by up to 0.52 points. Our findings highlight the potential and limitations of LLMs for data-driven causal discovery, demonstrating their ability to move beyond textual metadata and effectively interpret and utilize observational data for more informed causal reasoning. Our studies lays the groundwork for future advancements toward fully LLM-driven causal discovery.

cs.LG↗

arXiv2025

Prompting or Fine-tuning? Exploring Large Language Models for Causal Graph Validation

This study explores the capability of Large Language Models (LLMs) to evaluate causality in causal graphs generated by conventional statistical causal discovery methods-a task traditionally reliant on manual assessment by human subject matter experts. To bridge this gap in causality assessment, LLMs are employed to evaluate the causal relationships by determining whether a causal connection between variable pairs can be inferred from textual context. Our study compares two approaches: (1) prompting-based method for zero-shot and few-shot causal inference and, (2) fine-tuning language models for the causal relation prediction task. While prompt-based LLMs have demonstrated versatility across various NLP tasks, our experiments on biomedical and general-domain datasets show that fine-tuned models consistently outperform them, achieving up to a 20.5-point improvement in F1 score-even when using smaller-parameter language models. These findings provide valuable insights into the strengths and limitations of both approaches for causal graph evaluation.

cs.CL↗

arXiv2024

Knowledge Graph Structure as Prompt: Improving Small Language Models Capabilities for Knowledge-based Causal Discovery

Causal discovery aims to estimate causal structures among variables based on observational data. Large Language Models (LLMs) offer a fresh perspective to tackle the causal discovery problem by reasoning on the metadata associated with variables rather than their actual data values, an approach referred to as knowledge-based causal discovery. In this paper, we investigate the capabilities of Small Language Models (SLMs, defined as LLMs with fewer than 1 billion parameters) with prompt-based learning for knowledge-based causal discovery. Specifically, we present KG Structure as Prompt, a novel approach for integrating structural information from a knowledge graph, such as common neighbor nodes and metapaths, into prompt-based learning to enhance the capabilities of SLMs. Experimental results on three types of biomedical and open-domain datasets under few-shot settings demonstrate the effectiveness of our approach, surpassing most baselines and even conventional fine-tuning approaches trained on full datasets. Our findings further highlight the strong capabilities of SLMs: in combination with knowledge graphs and prompt-based learning, SLMs demonstrate the potential to surpass LLMs with larger number of parameters. Our code and datasets are available on GitHub.

cs.CL↗

arXiv2024

AutoRDF2GML: Facilitating RDF Integration in Graph Machine Learning

In this paper, we introduce AutoRDF2GML, a framework designed to convert RDF data into data representations tailored for graph machine learning tasks. AutoRDF2GML enables, for the first time, the creation of both content-based features -- i.e., features based on RDF datatype properties -- and topology-based features -- i.e., features based on RDF object properties. Characterized by automated feature extraction, AutoRDF2GML makes it possible even for users less familiar with RDF and SPARQL to generate data representations ready for graph machine learning tasks, such as link prediction, node classification, and graph classification. Furthermore, we present four new benchmark datasets for graph machine learning, created from large RDF knowledge graphs using our framework. These datasets serve as valuable resources for evaluating graph machine learning approaches, such as graph neural networks. Overall, our framework effectively bridges the gap between the Graph Machine Learning and Semantic Web communities, paving the way for RDF-based machine learning applications.

cs.LG↗

arXiv2024

Data Augmentation Techniques for Process Extraction from Scientific Publications

We present data augmentation techniques for process extraction tasks in scientific publications. We cast the process extraction task as a sequence labeling task where we identify all the entities in a sentence and label them according to their process-specific roles. The proposed method attempts to create meaningful augmented sentences by utilizing (1) process-specific information from the original sentence, (2) role label similarity, and (3) sentence similarity. We demonstrate that the proposed methods substantially improve the performance of the process extraction model trained on chemistry domain datasets, up to 12.3 points improvement in performance accuracy (F-score). The proposed methods could potentially reduce overfitting as well, especially when training on small datasets or in a low-resource setting such as in chemistry and other scientific domains.

cs.CL↗