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Yusaku Ohkubo

Publications and source records attributed to Yusaku Ohkubo.

2 recordsLinked to original sources

{poscosea} : A Computationally Efficient Sensitivity Analysis for Bayesian Models using the posterior covariance representation

Bayesian methods are essential in modern data analysis in ecology and evolutionary biology. They provide a flexible framework for modeling complex data-generating processes, while quantifying uncertainty based on the classical subjective interpretation of probability. However, Bayesian inference may provide misleading measures of uncertainty, particularly when the fitted model fails to adequately represent the true data-generating process. Although nonparametric approaches such as leave-k-out diagnostics and bootstrap resampling offer more robust alternatives under model misspecification, their computational cost is often too demanding because they require repeatedly refitting the same Bayesian model. In this paper, we introduce posterior covariance sensitivity analysis (PosCoSeA), a computationally efficient strategy for approximating leave-k-out diagnostics and bootstrap resampling without repeated model refitting. The performance of the methods is evaluated through both simulation studies and an application to real ecological data. We also provide an \textsf{R} package that implements these methods to facilitate their practical application.

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Two-Stage Estimation of Population Abundance with Robust Inference under Interacting Survey Protocols

Estimating population abundance from field surveys is often complicated by interference between multiple survey protocols. In this paper, we propose a two-stage estimation framework for abundance models in which detection processes interact, leading to both missed detections and sample loss caused by survey procedures. Our approach separates the calibration of sample loss from the estimation of detection probability, thereby avoiding the feedback and weak identifiability that can arise in fully joint hierarchical models. We further derive a sandwich-type robust variance estimator that propagates first-stage uncertainty into the second stage and remains valid under certain forms of model misspecification. Simulation studies demonstrated that the proposed method provides more reliable uncertainty quantification than a Bayesian hierarchical joint model, which tends to underestimate uncertainty even under correct specification. We illustrate the practical utility of the method using ectoparasite abundance data from the invasive Pallas's squirrel \textit{Callosciurus erythraeus}.

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