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Yuta Kobayashi

Publications and source records attributed to Yuta Kobayashi.

12 recordsLinked to original sources

Positive-Unlabeled Preference Optimization For Chest X-ray Report Generation

Vision-Language Models (VLMs) for radiology report generation are typically trained on retrospective clinical reports, which suffer from omission noise: clinically present findings are left unreported due to the omission of subtle findings. For example, prior studies show that cardiomegaly may be omitted from ICU chest X-ray reports when the imaging request is focused on monitoring support device placement. As a result, models trained with standard approaches inherit these omissions, learning to under-report findings themselves. We propose PU-DPO, a preference optimization framework to prevent omission noise from corrupting the preference signal. We reformulate the objective under a positive-unlabeled (PU) learning framework, treating absent mentions as unlabeled rather than truly negative. Our framework provides preference supervision using constructed contrastive pairs, generated using edits to model responses, producing variants that explicitly mention or omit a specific finding. Generated responses that mention the finding are naturally preferred in the context of visual evidence. Across semi-synthetic experiments and analyses on real-world chest radiograph benchmarks where adjudicated labels are available, PU-DPO yields consistent gains in detection rates and recovery of hidden positives across multiple pathologies, and is more robust to omission noise than prior approaches.

cs.CV

Tellurium Metasurface Beam Splitter with Pulse Laser-Controlled Anisotropy

Laser-programmable optical anisotropy offers a new route to developing reconfigurable metasurfaces without conventional nanofabrication processes. Here, we demonstrate a lithography-free approach based on spatial control of the crystallographic $c$ axis orientation in tellurium (Te) using pulse laser irradiation. As a proof of concept, we demonstrate a Te metasurface beam splitter by laser-written optical-axis patterning and experimentally confirm that its optical response is in good agreement with theoretical predictions and numerical simulations. By directly programming the local optical anisotropy, this method enables a simple fabrication process while offering the possibility of rewriting and dynamically reconfiguring device functionality. These features make this approach a promising platform for non-resonant active metasurfaces and other reconfigurable flat-optics applications.

cond-mat.mes-hall

Photo-thermal origin of pulse laser induced orientation of crystallographic c axis in Tellurium thin films

Recent studies have shown that the orientation of crystallographic c axis of Tellurium thin films can be controlled using picosecond long laser pulses. This method provides spatially programmable control of the crystal orientation and is therefore highly attractive for practical applications in functional optical and electronic devices. Previously, it was suggested that laser-induced selective melting and recrystallization can cause the laser-induced reorientation. However, this interpretation remains inconclusive due to limited data. To clarify the mechanism, here we systematically study Te samples under different irradiation conditions. We find that the threshold fluence for inducing optical reorientation depends on the number of laser pulses. The results agrees well with a minimal kinetic model based on the Arrhenius law. Using the model developed, we investigate the condition required to control the optic axis in other two-dimensional materials, such as black phosphorus, WTe2, and SnSe. These findings provide a guide for developing functional electro-optical devices based on anisotropic materials.

cond-mat.mes-hall

Current induced magneto-optical Kerr effect as a probe of Dirac carriers in Bi$_{1-x}$Sb$_x$ alloy

We study the current-induced magneto-optical Kerr effect (MOKE) in Bi$_{1-x}$Sb$_x$ semi-metalic alloys. The MOKE signal is found to be the largest in pure Bi ($x=0$), exceeding that of transition metals by nearly four orders of magnitude, and decreases monotonically with increasing Sb concentration. We find the MOKE signal scales with the resistivity ($\rho$) as $\rho^{1.7 \pm 0.6}$ and with the mobility ($\mu_\mathrm{c}$) as $\mu_\mathrm{c}^{2.0 \pm 0.2}$. Model calculations show that such exponent can be accounted for if the Dirac electrons are responsible for the generation of spin current. This is in contrast to the $\rho^{2}$ and $\mu_\mathrm{c}^{-2}$ scaling of the MOKE signal induced by the free electrons in parabolic band. The scaling of the MOKE amplitude with the resistivity also partly accounts for the order of magnitude differences of the signal observed between metals, semimetals, and semiconductors. These results demonstrate that current induced MOKE serves as an effective means to characterize the nature of spin current in materials with diverse electronic structures.

cond-mat.mes-hall

Aligning Probabilistic Beliefs under Informative Missingness: LLM Steerability in Clinical Reasoning

Large Language Models (LLMs) are increasingly deployed for clinical reasoning tasks, which inherently require eliciting calibrated probabilistic beliefs based on available evidence. However, real-world clinical data are frequently incomplete, with missingness patterns often informative of patient prognosis; for example, ordering a rare laboratory test reflects a clinician's latent suspicion. In this work, we investigate whether LLMs can be steered to leverage this informative missingness for prognostic inference. To evaluate how well LLMs align their verbalized probabilistic beliefs with an underlying target distribution, we analyze three common prompt-based interventions: explicit serialization, instruction steering, and in-context learning. We introduce a bias-variance decomposition of the log-loss to clarify the mechanisms driving gains in predictive performance. Using a real-world intensive care testbed, we find that while explicit structural steering and in-context learning can improve probabilistic alignment, the models do not natively leverage informative missingness without careful interventions.

cs.AI

One Loss to Rule Them All: Marked Time-to-Event for Structured EHR Foundation Models

Clinical events captured in Electronic Health Records (EHR) are irregularly sampled and may consist of a mixture of discrete events and numerical measurements, such as laboratory values or treatment dosages. The sequential nature of EHR, analogous to natural language, has motivated the use of next-token prediction to train prior EHR Foundation Models (FMs) over events. However, this training fails to capture the full structure of EHR. When a given event occurs must be captured, but the event value (abnormal lab) also modulates the likelihood of other clinical events. Most existing EHR FMs do not jointly model this likelihood and are unable to capture the full observation process, impacting downstream capabilities. We propose ORA, a marked time-to-event pretraining objective that jointly models event timing and associated measurements. Across multiple datasets, downstream tasks, and model backbones, this objective consistently yields more generalizable representations than next-token prediction and pretraining losses that ignore continuous measurements. Importantly, the proposed objective yields improvements beyond traditional classification evaluation, including better regression and time-to-event prediction. Beyond introducing a new family of FMs, our ablations suggest a broader takeaway: pretraining objectives that account for EHR structure are critical for expanding downstream capabilities and generalizability.

cs.LG

Learning-To-Measure: In-Context Active Feature Acquisition

Active feature acquisition (AFA) is a sequential decision-making problem where the goal is to improve model performance for test instances by adaptively selecting which features to acquire. In practice, AFA methods often learn from retrospective data with systematic missingness in the features and limited task-specific labels. Most prior work addresses acquisition for a single predetermined task, limiting scalability. To address this limitation, we formalize the meta-AFA problem, where the goal is to learn acquisition policies across various tasks. We introduce Learning-to-Measure (L2M), which consists of i) reliable uncertainty quantification over unseen tasks, and ii) an uncertainty-guided greedy feature acquisition agent that maximizes conditional mutual information. We demonstrate a sequence-modeling or autoregressive pre-training approach that underpins reliable uncertainty quantification for tasks with arbitrary missingness. L2M operates directly on datasets with retrospective missingness and performs the meta-AFA task in-context, eliminating per-task retraining. Across synthetic and real-world tabular benchmarks, L2M matches or surpasses task-specific baselines, particularly under scarce labels and high missingness.

cs.LG

Light-programmable reorientation of the crystallographic c-axis of Tellurium thin films

Tellurium (Te), a two-dimensional material with pronounced structural anisotropy, exhibits exceptional electrical and optical properties that are highly sensitive to its crystallographic orientation. However, conventional synthesis techniques offer limited control over the in-plane alignment of Te's crystallographic c-axis, hindering large-scale integration. Here, we report a novel, non-contact method to dynamically manipulate the c-axis orientation of Te thin films using linearly polarized picosecond laser pulses. We show that the c-axis can be omnidirectionally reoriented perpendicular to the laser polarization, even in initially polycrystalline films. This reorientation is fully reversible, allowing for rewritable and spatially selective control of the c-axis orientation post-deposition. Our light-driven approach enables programmable anisotropy in Te, opening new avenues for reconfigurable optoelectronic and photonic devices, such as active metasurfaces and CMOS-compatible architectures.

cond-mat.mes-hall

FoMoH: A clinically meaningful foundation model evaluation for structured electronic health records

Foundation models (FMs) promise to address core limitations of traditional supervised machine learning: (i) reliance on large amounts of labeled data, (ii) task specificity, and (iii) poor transportability. Despite methodological advances in structured electronic health record (EHR) foundation models, no systematic benchmark has validated whether these models meaningfully deliver on these promises. We introduce a benchmark of 14 clinically meaningful prediction tasks spanning patient prognosis and early diagnosis of acute and chronic conditions. We benchmark 6 state-of-the-art EHR FMs beyond population-level discrimination, emphasizing the need for evaluating their calibration and fairness, with rigorous controls for data contamination and reproducibility across more than 6 million patients from Columbia University Irving Medical Center and MIMIC-IV. Our benchmark identifies that FMs deliver on some of their promises. In particular, top-performing FMs outperform traditional baselines on discriminative performance, especially under limited labeled data, and exhibit more equitable performance across socio-medical groups. However, these models may underperform in low-prevalence settings, as pretraining losses may discard discriminative information about such conditions, and present lower calibration under limited labeled data. Further, cross-institutional transportability remains a challenge for structured EHR FMs. Together, these findings advance our understanding of EHR FMs' potential for clinical utility, highlight critical gaps that remain to be addressed, and provide a reproducible framework to track progress.

cs.LG

Ultrafast spin-to-charge conversions of antiferromagnetic (111)-oriented $\mathrm{L1_2}$-$\mathrm{Mn_3Ir}$

Antiferromagnetic $\mathrm{L1_2}$-$\mathrm{Mn_3Ir}$ combines outstanding spin-transport properties with magnons in the terahertz (THz) frequency range. However, the THz radiation emitted by ultrafast spin-to-charge conversion via the inverse spin Hall effect remains unexplored. In this study, we measured the THz emission and transmission of a permalloy/(111)-oriented $\mathrm{L1_2}$-$\mathrm{Mn_3Ir}$ multilayer by THz time-domain spectroscopy. The spin Hall angle was determined to be approximately constant at 0.035 within a frequency range of 0.3-2.2 THz, in comparison with the THz spectroscopy of a permalloy/Pt multilayer. Our results not only demonstrate the potential of $\mathrm{L1_2}$-$\mathrm{Mn_3Ir}$ as a spintronic THz emitter but also provide insights into the THz spin transport properties of $\mathrm{L1_2}$-$\mathrm{Mn_3Ir}$.

cond-mat.mtrl-sci

Dissipative Kerr soliton microcombs for FEC-free optical communications over 100 channels

The demand for high-speed and highly efficient optical communication techniques has been rapidly growing due to the ever-increasing volume of data traffic. As well as the digital coherent communication used for core and metro networks, intensity modulation and direct detection (IM-DD) are still promising schemes in intra/inter data centers thanks to their low latency, high reliability, and good cost performance. In this work, we study a microresonator-based frequency comb as a potential light source for future IM-DD optical systems where applications may include replacing individual stabilized lasers with a continuous laser driven microresonator. Regarding comb line powers and spectral intervals, we compare a modulation instability comb and a soliton microcomb and provide a quantitative analysis with regard to telecom applications. Our experimental demonstration achieved a forward error correction (FEC) free operation of bit-error rate (BER) <10^(-9) with a 1.45 Tbps capacity using a total of 145 lines over the entire C-band and revealed the possibility of soliton microcomb-based ultra-dense wavelength division multiplexing (WDM) with a simple, cost-effective IM-DD scheme, with a view to future practical use in data centers.

physics.app-ph

MOEA/D with Adaptative Number of Weight Vectors

The Multi-Objective Evolutionary Algorithm based on Decomposition (MOEA/D) is a popular algorithm for solving Multi-Objective Problems (MOPs). The main component of MOEA/D is to decompose a MOP into easier sub-problems using a set of weight vectors. The choice of the number of weight vectors significantly impacts the performance of MOEA/D. However, the right choice for this number varies, given different MOPs and search stages. Here we adaptively change the number of vectors by removing unnecessary vectors and adding new ones in empty areas of the objective space. Our MOEA/D variant uses the Consolidation Ratio to decide when to change the number of vectors, and then it decides where to add or remove these weighted vectors. We investigate the effects of this adaptive MOEA/D against MOEA/D with a poorly chosen set of vectors, a MOEA/D with fine-tuned vectors and MOEA/D-AWA on the DTLZ and ZDT benchmark functions. We analyse the algorithms in terms of hypervolume, IGD and entropy performance. Our results show that the proposed method is equivalent to MOEA/D with fine-tuned vectors and superior to MOEA/D with poorly defined vectors. Thus, our adaptive mechanism mitigates problems related to the choice of the number of weight vectors in MOEA/D, increasing the final performance of MOEA/D by filling empty areas of the objective space while avoiding premature stagnation of the search progress.

cs.NE