arXiv subjects

Yutong Xie

Publications and source records attributed to Yutong Xie.

At least 37 records · Page 2Linked to original sources

arXiv2026

IRIS: time-structured manifold projections

High-dimensional biomedical data, such as cell-by-gene matrices, are increasingly generated temporally. However, Manifold Learning algorithms, like t-SNE and UMAP, cannot incorporate time-ordering in their layouts, obfuscating the dynamics of cell types or other classes. As a solution, we present IRIS, a new Manifold Learning algorithm that structures layouts both chronologically and by manifold topology. IRIS can visualize a wide range of dynamic biomedical data, including scRNA-seq, comparative metagenomics, and literature.

cs.LG↗

arXiv2026

Finding the Correct Visual Evidence Without Forgetting: Mitigating Hallucination in LVLMs via Inter-Layer Visual Attention Discrepancy

Large Vision-Language Models (LVLMs) have shown remarkable performance on a wide range of vision-language tasks. Despite this progress, they are still prone to hallucination, generating responses that are inconsistent with visual content. In this work, we find that LVLMs tend to hallucinate when they pay insufficient attention to the correct visual evidence and gradually forget it during the generation process. We empirically find that although LVLMs overall attend insufficiently to visual evidence, they exhibit sensitivity to the correct visual evidence in specific layers, with notable inter-layer discrepancy. Motivated by this observation, we propose a novel hallucination mitigation method that enhances visual evidence based on Inter-Layer Visual Attention Discrepancy (ILVAD). Specifically, we obtain the attention weights from early generated tokens to visual tokens across layers and identify the tokens that are repeatedly activated as visual evidence, forming a saliency map. We then enhance attention to visual evidence during generation through the saliency map to reduce visual forgetting. In addition, we leverage the saliency map to obtain attention scores of generated text to visual evidence, in order to select and emphasize text tokens that are strongly grounded in visual evidence. Our method is training-free and plug-and-play. Multiple benchmark evaluations conducted on five recently released models show that our method can consistently mitigate hallucinations in different LVLMs over various architectures. Code is available at https://github.com/ytx-ML/ILVAD.

cs.CV↗

arXiv2026

Towards Physically Consistent 4D Scene Reconstruction for Closed-loop Autonomous Driving Simulation

High-fidelity street scene reconstruction is pivotal for end-to-end autonomous driving simulation, where novel-view synthesis (NVS) and time-varying information modeling are two fundamental capabilities to facilitate closed-loop training. However, existing 3DGS methods and their 4D extensions fail to simultaneously achieve both. To bridge this gap, we establish an information-geometric diagnostic framework, revealing that this limitation stems from a credit assignment dilemma between spatial and temporal parameters. Specifically, the deterministic coupling between viewpoint and time in single-source observation creates a low-rank structure that induces massive null-space ambiguity between static view-dependent and dynamic time-varying components. Temporal information overshadows spatial cues, causing the estimation variance of spatial parameters to diverge. To address this issue, we propose Orthogonal Projected Gradient (OPG), a hierarchical training method designed to restore spatial identifiability. OPG prioritizes the integrity of spatial representations by securing them in an initial stage, then restricts temporal updates to the spatial null space, enabling proactive credit assignment. While OPG isolates temporal updates algebraically, Temporal Regularization Strategy is proposed to further refine the temporal solution space by imposing a smoothness constraint based on the physical prior of consistent appearance evolution, ensuring that the reconstructed scene remains physically consistent in closed-loop simulation. Extensive experiments demonstrate that our method not only maintains stable NVS capabilities but also demonstrates superior performance in traditional observation-reproducing metrics, which indirectly reflect the capability of modeling temporal dynamics.

cs.CV↗

arXiv2026

TriALS: Triphasic-Aided Liver Lesion Segmentation Benchmark in Non-Contrast CT

Automated segmentation of liver lesions on non-contrast computed tomography (NCCT) is clinically important but fundamentally challenging, particularly in low-resource settings across Africa and Asia where contrast agents are frequently unavailable. Progress has been limited by the absence of annotated NCCT benchmarks. Here we describe the TriALS challenge for automated liver lesion segmentation under contrast-limited conditions, supported by a multi-centre dataset of 150 cases with four-phase CT acquisitions (600 volumes) from Egyptian and Chinese institutions. Algorithms were evaluated on 70 cases from three institutions, including an independent external cohort. The top-performing method achieved a mean venous-phase Dice of 0.754, consistent with human-level performance, yet dropped to 0.57 on NCCT. On external validation, the leading method outperformed off-the-shelf models by up to 28% in Dice on NCCT. Algorithm performance was most strongly predicted by training data scale and pre-training strategy. A cross-year comparison exposed a persistent perceptual barrier on NCCT that scaling pre-training alone cannot overcome. Data, annotations, and code are available at https://github.com/xmed-lab/TriALS.

cs.CV↗

arXiv2026

ATR-Bench: A Federated Learning Benchmark for Adaptation, Trust, and Reasoning

Federated Learning (FL) has emerged as a promising paradigm for collaborative model training while preserving data privacy across decentralized participants. As FL adoption grows, numerous techniques have been proposed to tackle its practical challenges. However, the lack of standardized evaluation across key dimensions hampers systematic progress and fair comparison of FL methods. In this work, we introduce ATR-Bench, a unified framework for analyzing federated learning through three foundational dimensions: Adaptation, Trust, and Reasoning. We provide an in-depth examination of the conceptual foundations, task formulations, and open research challenges associated with each theme. We have extensively benchmarked representative methods and datasets for adaptation to heterogeneous clients and trustworthiness in adversarial or unreliable environments. Due to the lack of reliable metrics and models for reasoning in FL, we only provide literature-driven insights for this dimension. ATR-Bench lays the groundwork for a systematic and holistic evaluation of federated learning with real-world relevance. We will make our complete codebase publicly accessible and a curated repository that continuously tracks new developments and research in the FL literature.

cs.LG↗

arXiv2026

Unveiling Deepfakes: A Frequency-Aware Triple Branch Network for Deepfake Detection

Advanced deepfake technologies are blurring the lines between real and fake, presenting both revolutionary opportunities and alarming threats. While it unlocks novel applications in fields like entertainment and education, its malicious use has sparked urgent ethical and societal concerns ranging from identity theft to the dissemination of misinformation. To tackle these challenges, feature analysis using frequency features has emergedas a promising direction for deepfake detection. However, oneaspect that has been overlooked so far is that existing methodstend to concentrate on one or a few specific frequency domains,which risks overfitting to particular artifacts and significantlyundermines their robustness when facing diverse forgery patterns. Another underexplored aspect we observe is that different features often attend to the same forged region, resulting in redundant feature representations and limiting the diversity of the extracted clues. This may undermine the ability of a model to capture complementary information across different facets, thereby compromising its generalization capability to diverse manipulations. In this paper, we seek to tackle these challenges from two aspects: (1) we propose a triple-branch network that jointly captures spatial and frequency features by learning from both original image and image reconstructed by different frequency channels, and (2) we mathematically derive feature decoupling and fusion losses grounded in the mutual information theory, which enhances the model to focus on task-relevant features across the original image and the image reconstructed by different frequency channels. Extensive experiments on six large-scale benchmark datasets demonstrate that our method consistently achieves state-of-the-art performance. Our code is released at https://github.com/injooker/Unveiling Deepfake.

cs.CV↗

arXiv2026

See Fair, Speak Truth: Equitable Attention Improves Grounding and Reduces Hallucination in Vision-Language Alignment

Multimodal large language models (MLLMs) frequently hallucinate objects that are absent from the visual input, often because attention during decoding is disproportionately drawn to visually dominant or frequently occurring content. We observe that this inequity in attention allocation is a root cause of object hallucination: when rare, small, or contextually peripheral objects receive insufficient attention, the model fails to ground its generation in the full visual scene. We argue that every object in an image, regardless of its size, frequency or visual salience, deserves equal representational opportunity during decoding. To this end, we propose DOP-OBC, a training-free and architecture-agnostic decoding strategy built on the principle of equitable attention. Two complementary object-aware signals work in tandem: a Dominant Object Penalty (DOP) that softly suppresses attention over-concentration on visually dominant regions, and an Outlier Boost Coefficient (OBC) that amplifies attention toward rare yet confidently detected objects. These signals are injected as per-row logit modulations within the causal attention mask, requiring no weight updates and preserving autoregressive decoding properties. Extensive experiments across image and video MLLMs demonstrate consistent reductions in object hallucination on CHAIR and POPE benchmarks, alongside improvements in GPT-4o assessed captioning quality across correctness, consistency, detail, context and temporal dimensions. DOP-OBC establishes that fairness in attention allocation is not merely a design principle but a practical and effective path toward more faithful multimodal generation.

cs.CV↗

arXiv2026

Beyond the Global Scores: Fine-Grained Token Grounding as a Robust Detector of LVLM Hallucinations

Large vision-language models (LVLMs) achieve strong performance on visual reasoning tasks but remain highly susceptible to hallucination. Existing detection methods predominantly rely on coarse, whole-image measures of how an object token relates to the input image. This global strategy is limited: hallucinated tokens may exhibit weak but widely scattered correlations across many local regions, which aggregate into deceptively high overall relevance, thus evading the current global hallucination detectors. We begin with a simple yet critical observation: a faithful object token must be strongly grounded in a specific image region. Building on this insight, we introduce a patch-level hallucination detection framework that examines fine-grained token-level interactions across model layers. Our analysis uncovers two characteristic signatures of hallucinated tokens: (i) they yield diffuse, non-localized attention patterns, in contrast to the compact, well-focused attention seen in faithful tokens; and (ii) they fail to exhibit meaningful semantic alignment with any visual region. Guided by these findings, we develop a lightweight and interpretable detection method that leverages patch-level statistical features, combined with hidden-layer representations. Our approach achieves up to 90% accuracy in token-level hallucination detection, demonstrating the superiority of fine-grained structural analysis for detecting hallucinations.

cs.CV↗

arXiv2026

MedObvious: Exposing the Medical Moravec's Paradox in VLMs via Clinical Triage

Vision Language Models (VLMs) are increasingly used for tasks like medical report generation and visual question answering. However, fluent diagnostic text does not guarantee safe visual understanding. In clinical practice, interpretation begins with pre-diagnostic sanity checks: verifying that the input is valid to read (correct modality and anatomy, plausible viewpoint and orientation, and no obvious integrity violations). Existing benchmarks largely assume this step is solved, and therefore miss a critical failure mode: a model can produce plausible narratives even when the input is inconsistent or invalid. We introduce MedObvious, a 1,880-task benchmark that isolates input validation as a set-level consistency capability over small multi-panel image sets: the model must identify whether any panel violates expected coherence. MedObvious spans five progressive tiers, from basic orientation/modality mismatches to clinically motivated anatomy/viewpoint verification and triage-style cues, and includes five evaluation formats to test robustness across interfaces. Evaluating 17 different VLMs, we find that sanity checking remains unreliable: several models hallucinate anomalies on normal (negative-control) inputs, performance degrades when scaling to larger image sets, and measured accuracy varies substantially between multiple-choice and open-ended settings. These results show that pre-diagnostic verification remains unsolved for medical VLMs and should be treated as a distinct, safety-critical capability before deployment.

cs.CV↗

arXiv2026

Geometric Imbalance in Semi-Supervised Node Classification

Class imbalance in graph data presents a significant challenge for effective node classification, particularly in semi-supervised scenarios. In this work, we formally introduce the concept of geometric imbalance, which captures how message passing on class-imbalanced graphs leads to geometric ambiguity among minority-class nodes in the riemannian manifold embedding space. We provide a rigorous theoretical analysis of geometric imbalance on the riemannian manifold and propose a unified framework that explicitly mitigates it through pseudo-label alignment, node reordering, and ambiguity filtering. Extensive experiments on diverse benchmarks show that our approach consistently outperforms existing methods, especially under severe class imbalance. Our findings offer new theoretical insights and practical tools for robust semi-supervised node classification.

cs.LG↗

arXiv2026

AURORA: Adaptive Unified Representation for Robust Ultrasound Analysis

Ultrasound images vary widely across scanners, operators, and anatomical targets, which often causes models trained in one setting to generalize poorly to new hospitals and clinical conditions. The Foundation Model Challenge for Ultrasound Image Analysis (FMC-UIA) reflects this difficulty by requiring a single model to handle multiple tasks, including segmentation, detection, classification, and landmark regression across diverse organs and datasets. We propose a unified multi-task framework based on a transformer visual encoder from the Qwen3-VL family. Intermediate token features are projected into spatial feature maps and fused using a lightweight multi-scale feature pyramid, enabling both pixel-level predictions and global reasoning within a shared representation. Each task is handled by a small task-specific prediction head, while training uses task-aware sampling and selective loss balancing to manage heterogeneous supervision and reduce task imbalance. Our method is designed to be simple to optimize and adaptable across a wide range of ultrasound analysis tasks. The performance improved from 67% to 85% on the validation set and achieved an average score of 81.84% on the official test set across all tasks. The code is publicly available at: https://github.com/saitejalekkala33/FMCUIA-ISBI.git

cs.CV↗

arXiv2026

ClinCoT: Clinical-Aware Visual Chain-of-Thought for Medical Vision Language Models

Medical Vision-Language Models have shown promising potential in clinical decision support, yet they remain prone to factual hallucinations due to insufficient grounding in localized pathological evidence. Existing medical alignment methods primarily operate at the response level through preference optimization, improving output correctness but leaving intermediate reasoning weakly connected to visual regions. Although chain-of-thought (CoT) enhances multimodal reasoning, it remains largely text-centric, limiting effective integration of clinical visual cues. To address this gap, we propose ClinCoT, a clinical-aware visual chain-of-thought framework that transforms preference optimization from response-level correction to visual-driven reasoning. We introduce an automatic data generation pipeline that constructs clinically grounded preference pairs through reasoning with hypotheses-driven region proposals. Multiple Med-LLMs evaluators rank and assign scores to each response, and these rankings serve as supervision to train the target model. We further introduce a scoring-based margin-aware optimization strategy that incorporates both preference ranking and score difference to refine region-level reasoning trajectories. To maintain alignment as the model's policy evolves during training, we adopt an iterative learning scheme that dynamically regenerates preference data. Extensive experiments on three medical VQA and report generation benchmarks demonstrate that ClinCoT consistently improves factual grounding and achieves superior performance compared with existing preference-based alignment methods.

cs.CV↗

arXiv2026

CMSA-Net: Causal Multi-scale Aggregation with Adaptive Multi-source Reference for Video Polyp Segmentation

Video polyp segmentation (VPS) is an important task in computer-aided colonoscopy, as it helps doctors accurately locate and track polyps during examinations. However, VPS remains challenging because polyps often look similar to surrounding mucosa, leading to weak semantic discrimination. In addition, large changes in polyp position and scale across video frames make stable and accurate segmentation difficult. To address these challenges, we propose a robust VPS framework named CMSA-Net. The proposed network introduces a Causal Multi-scale Aggregation (CMA) module to effectively gather semantic information from multiple historical frames at different scales. By using causal attention, CMA ensures that temporal feature propagation follows strict time order, which helps reduce noise and improve feature reliability. Furthermore, we design a Dynamic Multi-source Reference (DMR) strategy that adaptively selects informative and reliable reference frames based on semantic separability and prediction confidence. This strategy provides strong multi-frame guidance while keeping the model efficient for real-time inference. Extensive experiments on the SUN-SEG dataset demonstrate that CMSA-Net achieves state-of-the-art performance, offering a favorable balance between segmentation accuracy and real-time clinical applicability.

cs.CV↗

arXiv2026

SelfAI: A self-directed framework for long-horizon scientific discovery

Scientific discovery increasingly entails long-horizon exploration of complex hypothesis spaces, yet most existing approaches emphasize final performance while offering limited insight into how scientific exploration unfolds over time, particularly balancing efficiency-diversity trade-offs and supporting reproducible, human-in-the-loop discovery workflows. We introduce SelfAI, a self-directed, multi-agent-enabled discovery system that automates scientific exploration as a strategic, trajectory-driven decision-making process. SelfAI translates high-level research intent into executable experiments, reasons over accumulated experimental trajectories to guide subsequent exploration, and applies adaptive stopping decisions to terminate unproductive search paths within a closed-loop workflow governed by explicit efficiency-diversity trade-offs. Evaluated using real-world experiments spanning domains from machine learning to drug discovery, SelfAI consistently discovers high-quality solutions with substantially fewer redundant trials than classical optimization and recent LLM-based baselines. The proposed methods establish a general framework for organizing long-horizon scientific discovery and adaptive decision-making in complex scientific and engineering systems.

cs.LG↗

arXiv2026

DoAtlas-1: A Causal Compilation Paradigm for Clinical AI

Medical foundation models generate narrative explanations but cannot quantify intervention effects, detect evidence conflicts, or validate literature claims, limiting clinical auditability. We propose causal compilation, a paradigm that transforms medical evidence from narrative text into executable code. The paradigm standardizes heterogeneous research evidence into structured estimand objects, each explicitly specifying intervention contrast, effect scale, time horizon, and target population, supporting six executable causal queries: do-calculus, counterfactual reasoning, temporal trajectories, heterogeneous effects, mechanistic decomposition, and joint interventions. We instantiate this paradigm in DoAtlas-1, compiling 1,445 effect kernels from 754 studies through effect standardization, conflict-aware graph construction, and real-world validation (Human Phenotype Project, 10,000 participants). The system achieves 98.5% canonicalization accuracy and 80.5% query executability. This paradigm shifts medical AI from text generation to executable, auditable, and verifiable causal reasoning.

cs.AI↗

arXiv2026

MedViz: An Agent-based, Visual-guided Research Assistant for Navigating Biomedical Literature

Biomedical researchers face increasing challenges in navigating millions of publications in diverse domains. Traditional search engines typically return articles as ranked text lists, offering little support for global exploration or in-depth analysis. Although recent advances in generative AI and large language models have shown promise in tasks such as summarization, extraction, and question answering, their dialog-based implementations are poorly integrated with literature search workflows. To address this gap, we introduce MedViz, a visual analytics system that integrates multiple AI agents with interactive visualization to support the exploration of the large-scale biomedical literature. MedViz combines a semantic map of millions of articles with agent-driven functions for querying, summarizing, and hypothesis generation, allowing researchers to iteratively refine questions, identify trends, and uncover hidden connections. By bridging intelligent agents with interactive visualization, MedViz transforms biomedical literature search into a dynamic, exploratory process that accelerates knowledge discovery.

cs.IR↗

arXiv2026

SAM-aware Test-time Adaptation for Universal Medical Image Segmentation

Leveraging the Segment Anything Model (SAM) for medical image segmentation remains challenging due to its limited adaptability across diverse medical domains. Although fine-tuned variants, such as MedSAM, improve performance in scenarios similar to the training modalities or organs, they may lack generalizability to unseen data. To overcome this limitation, we propose SAM-aware Test-time Adaptation (SAM-TTA), a lightweight and flexible framework that preserves SAM's inherent generalization ability while enhancing segmentation accuracy for medical images. SAM-TTA tackles two major challenges: (1) input-level discrepancy caused by channel mismatches between natural and medical images, and (2) semantic-level discrepancy due to different object characteristics in natural versus medical images (e.g., with clear boundaries vs. ambiguous structures). To this end, we introduce two complementary components: a self-adaptive Bezier Curve-based Transformation (SBCT), which maps single-channel medical images into SAM-compatible three-channel images via a few learnable parameters to be optimized at test time; and IoU-guided Multi-scale Adaptation (IMA), which leverages SAM's intrinsic IoU scores to enforce high output confidence, dual-scale prediction consistency, and intermediate feature consistency, to improve semantic-level alignments. Extensive experiments on eight public medical image segmentation tasks, covering six grayscale and two color (endoscopic) tasks, demonstrate that SAM-TTA consistently outperforms state-of-the-art test-time adaptation methods. Notably, on six grayscale datasets, SAM-TTA even surpasses fully fine-tuned models, achieving significant Dice improvements (i.e., average 4.8% and 7.4% gains over MedSAM and SAM-Med2D) and establishing a new paradigm for universal medical image segmentation. Code is available at https://github.com/JianghaoWu/SAM-TTA.

cs.CV↗

arXiv2025

TransPrune: Token Transition Pruning for Efficient Large Vision-Language Model

Large Vision-Language Models (LVLMs) have advanced multimodal learning but face high computational costs due to the large number of visual tokens, motivating token pruning to improve inference efficiency. The key challenge lies in identifying which tokens are truly important. Most existing approaches rely on attention-based criteria to estimate token importance. However, they inherently suffer from certain limitations, such as positional bias. In this work, we explore a new perspective on token importance based on token transitions in LVLMs. We observe that the transition of token representations provides a meaningful signal of semantic information. Based on this insight, we propose TransPrune, a training-free and efficient token pruning method. Specifically, TransPrune progressively prunes tokens by assessing their importance through a combination of Token Transition Variation (TTV)-which measures changes in both the magnitude and direction of token representations-and Instruction-Guided Attention (IGA), which measures how strongly the instruction attends to image tokens via attention. Extensive experiments demonstrate that TransPrune achieves comparable multimodal performance to original LVLMs, such as LLaVA-v1.5 and LLaVA-Next, across eight benchmarks, while reducing inference TFLOPs by more than half. Moreover, TTV alone can serve as an effective criterion without relying on attention, achieving performance comparable to attention-based methods. The code will be made publicly available upon acceptance of the paper at https://github.com/liaolea/TransPrune.

cs.CV↗