arXiv subjects

Yuyao Zhang

Publications and source records attributed to Yuyao Zhang.

At least 73 records · Page 4Linked to original sources

arXiv2024

Resolution Enhancement of Under-sampled Photoacoustic Microscopy Images using Implicit Neural Representations

Acoustic-Resolution Photoacoustic Microscopy (AR-PAM) is promising for subcutaneous vascular imaging, but its spatial resolution is constrained by the Point Spread Function (PSF). Traditional deconvolution methods like Richardson-Lucy and model-based deconvolution use the PSF to improve resolution. However, accurately measuring the PSF is difficult, leading to reliance on less accurate blind deconvolution techniques. Additionally, AR-PAM suffers from long scanning times, which can be reduced via down-sampling, but this necessitates effective image recovery from under-sampled data, a task where traditional interpolation methods fall short, particularly at high under-sampling rates. To address these challenges, we propose an approach based on Implicit Neural Representations (INR). This method learns a continuous mapping from spatial coordinates to initial acoustic pressure, overcoming the limitations of discrete imaging and enhancing AR-PAM's resolution. By treating the PSF as a learnable parameter within the INR framework, our technique mitigates inaccuracies associated with PSF estimation. We evaluated our method on simulated vascular data, showing significant improvements in Peak Signal-to-Noise Ratio (PSNR) and Structural Similarity Index (SSIM) over conventional methods. Qualitative enhancements were also observed in leaf vein and in vivo mouse brain microvasculature images. When applied to a custom AR-PAM system, experiments with pencil lead demonstrated that our method delivers sharper, higher-resolution results, indicating its potential to advance photoacoustic microscopy.

cs.CV↗

arXiv2024

Coordinate-Based Neural Representation Enabling Zero-Shot Learning for 3D Multiparametric Quantitative MRI

Quantitative magnetic resonance imaging (qMRI) offers tissue-specific physical parameters with significant potential for neuroscience research and clinical practice. However, lengthy scan times for 3D multiparametric qMRI acquisition limit its clinical utility. Here, we propose SUMMIT, an innovative imaging methodology that includes data acquisition and an unsupervised reconstruction for simultaneous multiparametric qMRI. SUMMIT first encodes multiple important quantitative properties into highly undersampled k-space. It further leverages implicit neural representation incorporated with a dedicated physics model to reconstruct the desired multiparametric maps without needing external training datasets. SUMMIT delivers co-registered T1, T2, T2*, and quantitative susceptibility mapping. Extensive simulations and phantom imaging demonstrate SUMMIT's high accuracy. Additionally, the proposed unsupervised approach for qMRI reconstruction also introduces a novel zero-shot learning paradigm for multiparametric imaging applicable to various medical imaging modalities.

cs.CV↗

arXiv2024

Implicit Neural Representation for Sparse-view Photoacoustic Computed Tomography

High-quality imaging in photoacoustic computed tomography (PACT) usually requires a high-channel count system for dense spatial sampling around the object to avoid aliasing-related artefacts. To reduce system complexity, various image reconstruction approaches, such as model-based (MB) and deep learning based methods, have been explored to mitigate the artefacts associated with sparse-view acquisition. However, the explored methods formulated the reconstruction problem in a discrete framework, making it prone to measurement errors, discretization errors, and the extend of the ill-poseness of the problem scales with the discretization resolution. In this work, an implicit neural representation (INR) framework is proposed for image reconstruction in PACT with ring transducer arrays to address these issues. pecially, the initial heat distribution is represented as a continuous function of spatial coordinates using a multi-layer perceptron (MLP). The weights of the MLP are then determined by a training process in a self-supervised manner, by minimizing the errors between the measured and model predicted PA signals. After training, PA images can be mapped by feeding the coordinates to the network. Simulation and phantom experiments showed that the INR method performed best in preserving image fidelity and in artefacts suppression for the same acquisition condition, compared to universal back-projection and MB methods.

eess.IV↗

arXiv2024

Enabling Discriminative Reasoning in LLMs for Legal Judgment Prediction

Legal judgment prediction is essential for enhancing judicial efficiency. In this work, we identify that existing large language models (LLMs) underperform in this domain due to challenges in understanding case complexities and distinguishing between similar charges. To adapt LLMs for effective legal judgment prediction, we introduce the Ask-Discriminate-Predict (ADAPT) reasoning framework inspired by human judicial reasoning. ADAPT involves decomposing case facts, discriminating among potential charges, and predicting the final judgment. We further enhance LLMs through fine-tuning with multi-task synthetic trajectories to improve legal judgment prediction accuracy and efficiency under our ADAPT framework. Extensive experiments conducted on two widely-used datasets demonstrate the superior performance of our framework in legal judgment prediction, particularly when dealing with complex and confusing charges.

cs.CL↗

arXiv2024

DPER: Diffusion Prior Driven Neural Representation for Limited Angle and Sparse View CT Reconstruction

Limited-angle and sparse-view computed tomography (LACT and SVCT) are crucial for expanding the scope of X-ray CT applications. However, they face challenges due to incomplete data acquisition, resulting in diverse artifacts in the reconstructed CT images. Emerging implicit neural representation (INR) techniques, such as NeRF, NeAT, and NeRP, have shown promise in under-determined CT imaging reconstruction tasks. However, the unsupervised nature of INR architecture imposes limited constraints on the solution space, particularly for the highly ill-posed reconstruction task posed by LACT and ultra-SVCT. In this study, we introduce the Diffusion Prior Driven Neural Representation (DPER), an advanced unsupervised framework designed to address the exceptionally ill-posed CT reconstruction inverse problems. DPER adopts the Half Quadratic Splitting (HQS) algorithm to decompose the inverse problem into data fidelity and distribution prior sub-problems. The two sub-problems are respectively addressed by INR reconstruction scheme and pre-trained score-based diffusion model. This combination first injects the implicit image local consistency prior from INR. Additionally, it effectively augments the feasibility of the solution space for the inverse problem through the generative diffusion model, resulting in increased stability and precision in the solutions. We conduct comprehensive experiments to evaluate the performance of DPER on LACT and ultra-SVCT reconstruction with two public datasets (AAPM and LIDC), an in-house clinical COVID-19 dataset and a public raw projection dataset created by Mayo Clinic. The results show that our method outperforms the state-of-the-art reconstruction methods on in-domain datasets, while achieving significant performance improvements on out-of-domain (OOD) datasets.

eess.IV↗

arXiv2024

Neural Implicit Surface Reconstruction of Freehand 3D Ultrasound Volume with Geometric Constraints

Three-dimensional (3D) freehand ultrasound (US) is a widely used imaging modality that allows non-invasive imaging of medical anatomy without radiation exposure. Surface reconstruction of US volume is vital to acquire the accurate anatomical structures needed for modeling, registration, and visualization. However, traditional methods cannot produce a high-quality surface due to image noise. Despite improvements in smoothness, continuity, and resolution from deep learning approaches, research on surface reconstruction in freehand 3D US is still limited. This study introduces FUNSR, a self-supervised neural implicit surface reconstruction method to learn signed distance functions (SDFs) from US volumes. In particular, FUNSR iteratively learns the SDFs by moving the 3D queries sampled around volumetric point clouds to approximate the surface, guided by two novel geometric constraints: sign consistency constraint and onsurface constraint with adversarial learning. Our approach has been thoroughly evaluated across four datasets to demonstrate its adaptability to various anatomical structures, including a hip phantom dataset, two vascular datasets and one publicly available prostate dataset. We also show that smooth and continuous representations greatly enhance the visual appearance of US data. Furthermore, we highlight the potential of our method to improve segmentation performance, and its robustness to noise distribution and motion perturbation.

eess.IV↗

arXiv2024

Limited-View Photoacoustic Imaging Reconstruction Via High-quality Self-supervised Neural Representation

In practical applications within the human body, it is often challenging to fully encompass the target tissue or organ, necessitating the use of limited-view arrays, which can lead to the loss of crucial information. Addressing the reconstruction of photoacoustic sensor signals in limited-view detection spaces has become a focal point of current research. In this study, we introduce a self-supervised network termed HIgh-quality Self-supervised neural representation (HIS), which tackles the inverse problem of photoacoustic imaging to reconstruct high-quality photoacoustic images from sensor data acquired under limited viewpoints. We regard the desired reconstructed photoacoustic image as an implicit continuous function in 2D image space, viewing the pixels of the image as sparse discrete samples. The HIS's objective is to learn the continuous function from limited observations by utilizing a fully connected neural network combined with Fourier feature position encoding. By simply minimizing the error between the network's predicted sensor data and the actual sensor data, HIS is trained to represent the observed continuous model. The results indicate that the proposed HIS model offers superior image reconstruction quality compared to three commonly used methods for photoacoustic image reconstruction.

cs.CV↗

arXiv2024

Highly Accelerated MRI via Implicit Neural Representation Guided Posterior Sampling of Diffusion Models

Reconstructing high-fidelity magnetic resonance (MR) images from under-sampled k-space is a commonly used strategy to reduce scan time. The posterior sampling of diffusion models based on the real measurement data holds significant promise of improved reconstruction accuracy. However, traditional posterior sampling methods often lack effective data consistency guidance, leading to inaccurate and unstable reconstructions. Implicit neural representation (INR) has emerged as a powerful paradigm for solving inverse problems by modeling a signal's attributes as a continuous function of spatial coordinates. In this study, we present a novel posterior sampler for diffusion models using INR, named DiffINR. The INR-based component incorporates both the diffusion prior distribution and the MRI physical model to ensure high data fidelity. DiffINR demonstrates superior performance on experimental datasets with remarkable accuracy, even under high acceleration factors (up to R=12 in single-channel reconstruction). Notably, our proposed framework can be a generalizable framework to solve inverse problems in other medical imaging tasks.

eess.IV↗

arXiv2024

Sparse-view Signal-domain Photoacoustic Tomography Reconstruction Method Based on Neural Representation

Photoacoustic tomography is a hybrid biomedical technology, which combines the advantages of acoustic and optical imaging. However, for the conventional image reconstruction method, the image quality is affected obviously by artifacts under the condition of sparse sampling. in this paper, a novel model-based sparse reconstruction method via implicit neural representation was proposed for improving the image quality reconstructed from sparse data. Specially, the initial acoustic pressure distribution was modeled as a continuous function of spatial coordinates, and parameterized by a multi-layer perceptron. The weights of multi-layer perceptron were determined by training the network in self-supervised manner. And the total variation regularization term was used to offer the prior knowledge. We compared our result with some ablation studies, and the results show that out method outperforms existing methods on simulation and experimental data. Under the sparse sampling condition, our method can suppress the artifacts and avoid the ill-posed problem effectively, which reconstruct images with higher signal-to-noise ratio and contrast-to-noise ratio than traditional methods. The high-quality results for sparse data make the proposed method hold the potential for further decreasing the hardware cost of photoacoustic tomography system.

eess.IV↗

arXiv2024

VP-LLM: Text-Driven 3D Volume Completion with Large Language Models through Patchification

Recent conditional 3D completion works have mainly relied on CLIP or BERT to encode textual information, which cannot support complex instruction. Meanwhile, large language models (LLMs) have shown great potential in multi-modal understanding and generation tasks. Inspired by the recent advancements of LLM, we present Volume Patch LLM (VP-LLM), which leverages LLMs to perform conditional 3D completion in a single-forward pass. To integrate a 3D model into the LLM tokenization configuration, the incomplete 3D object is first divided into small patches that can be encoded independently. These encoded patches are then fed into an LLM along with the text prompt, instructing the LLM to capture the relations between these patches as well as injecting semantic meanings into the 3D object. Our results demonstrate a strong ability of LLMs to interpret complex text instructions and understand 3D objects, surpassing state-of-the-art diffusion-based 3D completion models in generation quality.

cs.CV↗

arXiv2024

Semantic Gesticulator: Semantics-Aware Co-Speech Gesture Synthesis

In this work, we present Semantic Gesticulator, a novel framework designed to synthesize realistic gestures accompanying speech with strong semantic correspondence. Semantically meaningful gestures are crucial for effective non-verbal communication, but such gestures often fall within the long tail of the distribution of natural human motion. The sparsity of these movements makes it challenging for deep learning-based systems, trained on moderately sized datasets, to capture the relationship between the movements and the corresponding speech semantics. To address this challenge, we develop a generative retrieval framework based on a large language model. This framework efficiently retrieves suitable semantic gesture candidates from a motion library in response to the input speech. To construct this motion library, we summarize a comprehensive list of commonly used semantic gestures based on findings in linguistics, and we collect a high-quality motion dataset encompassing both body and hand movements. We also design a novel GPT-based model with strong generalization capabilities to audio, capable of generating high-quality gestures that match the rhythm of speech. Furthermore, we propose a semantic alignment mechanism to efficiently align the retrieved semantic gestures with the GPT's output, ensuring the naturalness of the final animation. Our system demonstrates robustness in generating gestures that are rhythmically coherent and semantically explicit, as evidenced by a comprehensive collection of examples. User studies confirm the quality and human-likeness of our results, and show that our system outperforms state-of-the-art systems in terms of semantic appropriateness by a clear margin.

cs.GR↗

arXiv2024

Causally Aware Generative Adversarial Networks for Light Pollution Control

Artificial light plays an integral role in modern cities, significantly enhancing human productivity and the efficiency of civilization. However, excessive illumination can lead to light pollution, posing non-negligible threats to economic burdens, ecosystems, and human health. Despite its critical importance, the exploration of its causes remains relatively limited within the field of artificial intelligence, leaving an incomplete understanding of the factors contributing to light pollution and sustainable illumination planning distant. To address this gap, we introduce a novel framework named Causally Aware Generative Adversarial Networks (CAGAN). This innovative approach aims to uncover the fundamental drivers of light pollution within cities and offer intelligent solutions for optimal illumination resource allocation in the context of sustainable urban development. We commence by examining light pollution across 33,593 residential areas in seven global metropolises. Our findings reveal substantial influences on light pollution levels from various building types, notably grasslands, commercial centers and residential buildings as significant contributors. These discovered causal relationships are seamlessly integrated into the generative modeling framework, guiding the process of generating light pollution maps for diverse residential areas. Extensive experiments showcase CAGAN's potential to inform and guide the implementation of effective strategies to mitigate light pollution. Our code and data are publicly available at https://github.com/zhangyuuao/Light_Pollution_CAGAN.

cs.CY↗

arXiv2023

Prompt2NeRF-PIL: Fast NeRF Generation via Pretrained Implicit Latent

This paper explores promptable NeRF generation (e.g., text prompt or single image prompt) for direct conditioning and fast generation of NeRF parameters for the underlying 3D scenes, thus undoing complex intermediate steps while providing full 3D generation with conditional control. Unlike previous diffusion-CLIP-based pipelines that involve tedious per-prompt optimizations, Prompt2NeRF-PIL is capable of generating a variety of 3D objects with a single forward pass, leveraging a pre-trained implicit latent space of NeRF parameters. Furthermore, in zero-shot tasks, our experiments demonstrate that the NeRFs produced by our method serve as semantically informative initializations, significantly accelerating the inference process of existing prompt-to-NeRF methods. Specifically, we will show that our approach speeds up the text-to-NeRF model DreamFusion and the 3D reconstruction speed of the image-to-NeRF method Zero-1-to-3 by 3 to 5 times.

cs.CV↗

arXiv2023

IMJENSE: Scan-specific Implicit Representation for Joint Coil Sensitivity and Image Estimation in Parallel MRI

Parallel imaging is a commonly used technique to accelerate magnetic resonance imaging (MRI) data acquisition. Mathematically, parallel MRI reconstruction can be formulated as an inverse problem relating the sparsely sampled k-space measurements to the desired MRI image. Despite the success of many existing reconstruction algorithms, it remains a challenge to reliably reconstruct a high-quality image from highly reduced k-space measurements. Recently, implicit neural representation has emerged as a powerful paradigm to exploit the internal information and the physics of partially acquired data to generate the desired object. In this study, we introduced IMJENSE, a scan-specific implicit neural representation-based method for improving parallel MRI reconstruction. Specifically, the underlying MRI image and coil sensitivities were modeled as continuous functions of spatial coordinates, parameterized by neural networks and polynomials, respectively. The weights in the networks and coefficients in the polynomials were simultaneously learned directly from sparsely acquired k-space measurements, without fully sampled ground truth data for training. Benefiting from the powerful continuous representation and joint estimation of the MRI image and coil sensitivities, IMJENSE outperforms conventional image or k-space domain reconstruction algorithms. With extremely limited calibration data, IMJENSE is more stable than supervised calibrationless and calibration-based deep-learning methods. Results show that IMJENSE robustly reconstructs the images acquired at 5$\mathbf{\times}$ and 6$\mathbf{\times}$ accelerations with only 4 or 8 calibration lines in 2D Cartesian acquisitions, corresponding to 22.0% and 19.5% undersampling rates. The high-quality results and scanning specificity make the proposed method hold the potential for further accelerating the data acquisition of parallel MRI.

eess.IV↗

arXiv2023

JSMoCo: Joint Coil Sensitivity and Motion Correction in Parallel MRI with a Self-Calibrating Score-Based Diffusion Model

Magnetic Resonance Imaging (MRI) stands as a powerful modality in clinical diagnosis. However, it is known that MRI faces challenges such as long acquisition time and vulnerability to motion-induced artifacts. Despite the success of many existing motion correction algorithms, there has been limited research focused on correcting motion artifacts on the estimated coil sensitivity maps for fast MRI reconstruction. Existing methods might suffer from severe performance degradation due to error propagation resulting from the inaccurate coil sensitivity maps estimation. In this work, we propose to jointly estimate the motion parameters and coil sensitivity maps for under-sampled MRI reconstruction, referred to as JSMoCo. However, joint estimation of motion parameters and coil sensitivities results in a highly ill-posed inverse problem due to an increased number of unknowns. To address this, we introduce score-based diffusion models as powerful priors and leverage the MRI physical principles to efficiently constrain the solution space for this optimization problem. Specifically, we parameterize the rigid motion as three trainable variables and model coil sensitivity maps as polynomial functions. Leveraging the physical knowledge, we then employ Gibbs sampler for joint estimation, ensuring system consistency between sensitivity maps and desired images, avoiding error propagation from pre-estimated sensitivity maps to the reconstructed images. We conduct comprehensive experiments to evaluate the performance of JSMoCo on the fastMRI dataset. The results show that our method is capable of reconstructing high-quality MRI images from sparsely-sampled k-space data, even affected by motion. It achieves this by accurately estimating both motion parameters and coil sensitivities, effectively mitigating motion-related challenges during MRI reconstruction.

eess.IV↗

arXiv2023

Unsupervised Polychromatic Neural Representation for CT Metal Artifact Reduction

Emerging neural reconstruction techniques based on tomography (e.g., NeRF, NeAT, and NeRP) have started showing unique capabilities in medical imaging. In this work, we present a novel Polychromatic neural representation (Polyner) to tackle the challenging problem of CT imaging when metallic implants exist within the human body. CT metal artifacts arise from the drastic variation of metal's attenuation coefficients at various energy levels of the X-ray spectrum, leading to a nonlinear metal effect in CT measurements. Recovering CT images from metal-affected measurements hence poses a complicated nonlinear inverse problem where empirical models adopted in previous metal artifact reduction (MAR) approaches lead to signal loss and strongly aliased reconstructions. Polyner instead models the MAR problem from a nonlinear inverse problem perspective. Specifically, we first derive a polychromatic forward model to accurately simulate the nonlinear CT acquisition process. Then, we incorporate our forward model into the implicit neural representation to accomplish reconstruction. Lastly, we adopt a regularizer to preserve the physical properties of the CT images across different energy levels while effectively constraining the solution space. Our Polyner is an unsupervised method and does not require any external training data. Experimenting with multiple datasets shows that our Polyner achieves comparable or better performance than supervised methods on in-domain datasets while demonstrating significant performance improvements on out-of-domain datasets. To the best of our knowledge, our Polyner is the first unsupervised MAR method that outperforms its supervised counterparts. The code for this work is available at: https://github.com/iwuqing/Polyner.

eess.IV↗

arXiv2023

Self-Prompting Large Vision Models for Few-Shot Medical Image Segmentation

Recent advancements in large foundation models have shown promising potential in the medical industry due to their flexible prompting capability. One such model, the Segment Anything Model (SAM), a prompt-driven segmentation model, has shown remarkable performance improvements, surpassing state-of-the-art approaches in medical image segmentation. However, existing methods primarily rely on tuning strategies that require extensive data or prior prompts tailored to the specific task, making it particularly challenging when only a limited number of data samples are available. In this paper, we propose a novel perspective on self-prompting in medical vision applications. Specifically, we harness the embedding space of SAM to prompt itself through a simple yet effective linear pixel-wise classifier. By preserving the encoding capabilities of the large model, the contextual information from its decoder, and leveraging its interactive promptability, we achieve competitive results on multiple datasets (i.e. improvement of more than 15% compared to fine-tuning the mask decoder using a few images).

cs.CV↗

arXiv2023

Self-Supervised Coordinate Projection Network for Sparse-View Computed Tomography

In the present work, we propose a Self-supervised COordinate Projection nEtwork (SCOPE) to reconstruct the artifacts-free CT image from a single SV sinogram by solving the inverse tomography imaging problem. Compared with recent related works that solve similar problems using implicit neural representation network (INR), our essential contribution is an effective and simple re-projection strategy that pushes the tomography image reconstruction quality over supervised deep learning CT reconstruction works. The proposed strategy is inspired by the simple relationship between linear algebra and inverse problems. To solve the under-determined linear equation system, we first introduce INR to constrain the solution space via image continuity prior and achieve a rough solution. And secondly, we propose to generate a dense view sinogram that improves the rank of the linear equation system and produces a more stable CT image solution space. Our experiment results demonstrate that the re-projection strategy significantly improves the image reconstruction quality (+3 dB for PSNR at least). Besides, we integrate the recent hash encoding into our SCOPE model, which greatly accelerates the model training. Finally, we evaluate SCOPE in parallel and fan X-ray beam SVCT reconstruction tasks. Experimental results indicate that the proposed SCOPE model outperforms two latest INR-based methods and two well-popular supervised DL methods quantitatively and qualitatively.

eess.IV↗