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Yuze Zhou

Publications and source records attributed to Yuze Zhou.

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CaliPPer: quantifying, predicting and improving AI model performance for binding prediction

Binding prediction models accelerate therapeutic antibody and TCR discovery, but their performance on new datasets is unpredictable, often leading to low discovery rates. Density-ratio methods (PAPE, M-CBPE) provide label-free performance estimation for binary classification, but their assumptions and aggregate-only outputs limit binding prediction on neoepitopes, antigen variants and chemical scaffolds. Here we present CaliPPer (Calibration and Prediction of Performance), a post-hoc framework pairing a multi-chain Sample-to-Domain Distance (S2DD) with distance-aware Bayesian recalibration, operating at three resolutions: generalisability score, aggregate performance prediction, and per-sample confidence. Across ten models, eight architectures and two immune-receptor domains, CaliPPer attains distance--performance correlations $|r|=0.80\text{--}0.92$, predicts AUROC/AP/F1 with mean absolute errors $0.008\text{--}0.070$, and improves AUROC by up to $+0.20$ on unseen epitopes/variants. Applied retrospectively to five published TCR, BCR, MHC--peptide and small-molecule studies, CaliPPer raises true discovery rates in all five (e.g.\ $0/5 \to 3/5$ confirmed neoantigens), providing a triage layer between computational prediction and experimental validation.

cs.CE

Heterogeneous AAV Logistics Task Allocation: A Reinforcement Learning Enhanced Overlapping Coalition Formation Game Approach

In dynamic urban logistics, the stochastic emergence of time-sensitive tasks poses a significant optimality challenge for heterogeneous AAVs logistics task allocation. To address this problem, a reinforcement learning enhanced overlapping coalition formation game approach is proposed. A dynamic task allocation model is established, where global optimality is mathematically quantified by a generalized logistics cost coupling service quality and resource consumption. To deal with the time-varying task sets induced by stochastic order arrivals, a transformer-based soft actor-critic network is designed. By leveraging multi-head self-attention to encode variable-length logistics states and capture task-wise spatiotemporal dependencies, the learned policy adaptively guides coalition updates, replacing heuristic rules in the overlapping coalition formation game. On this basis, heterogeneous AAVs can form more efficient overlapping coalitions for dynamic logistics tasks. The resulting coalition formation process is proven to constitute an exact potential game, which guarantees convergence to a Nash-stable equilibrium within a finite number of iterations. Numerical simulations demonstrate that the proposed algorithm effectively improves the optimality of task allocation under the generalized logistics cost criterion. In a scenario with 32 AAVs and 80 tasks, our algorithm achieves a 39.76% cost reduction compared with the heuristic OCF baseline. Indoor flight experiments further validate its practicality.

cs.RO

PilotTTS: A Disciplined Modular Recipe for Competitive Speech Synthesis

Building state-of-the-art text-to-speech (TTS) systems typically demands millions of hours of proprietary data and complex multi-stage architectures, creating substantial barriers for resource-constrained research teams. In this report, we present PilotTTS, a lightweight autoregressive TTS system that achieves competitive performance through minimalist architecture and rigorous data engineering. PilotTTS is trained on only 200K hours of data processed entirely with open-source tools. Specifically, our contributions are: (1) a reproducible multi-stage data processing pipeline covering quality assessment, label annotation, and filtering, and (2) a compact model architecture that employs Q-Former-based conditioning to decouple speaker identity from speaking style via cross-sample paired training. Within a unified framework, PilotTTS supports zero-shot voice cloning, emotion synthesis (11 categories), paralinguistic synthesis (4 categories), and Chinese dialect synthesis (14 dialects). On the Seed-TTS Eval benchmark, PilotTTS achieves the lowest WER of 1.50% on test-en, a CER of 0.87% on test-zh, and the highest speaker similarity on both test sets (0.862 and 0.815), outperforming systems trained on significantly larger datasets. We release the complete data pipeline recipe, pretrained weights, and code at https://github.com/AMAPVOICE/PilotTTS.

cs.SD

Preconditioned Discrete-HAMS: A Second-order Irreversible Discrete Sampler

Gradient-based Markov Chain Monte Carlo methods have recently received much attention for sampling discrete distributions, with notable examples such as Norm Constrained Gradient (NCG), Auxiliary Variable Gradient (AVG), and Discrete Hamiltonian Assisted Metropolis Sampling (DHAMS). In this work, we propose the Preconditioned Discrete-HAMS (PDHAMS) algorithm, which extends DHAMS by incorporating a second-order, quadratic approximation of the potential function, and uses Gaussian integral trick to avoid directly sampling a pairwise Markov random field. The PDHAMS sampler not only satisfies generalized detailed balance, hence enabling irreversible sampling, but also is a rejection-free property for a target distribution with a quadratic potential function. In various numerical experiments, PDHAMS algorithms consistently yield superior performance compared with other methods.

stat.ME

Quantize More, Lose Less: Autoregressive Generation from Residually Quantized Speech Representations

Text-to-speech (TTS) synthesis has seen renewed progress under the discrete modeling paradigm. Existing autoregressive approaches often rely on single-codebook representations, which suffer from significant information loss. Even with post-hoc refinement techniques such as flow matching, these methods fail to recover fine-grained details (e.g., prosodic nuances, speaker-specific timbres), especially in challenging scenarios like singing voice or music synthesis. We propose QTTS, a novel TTS framework built upon our new audio codec, QDAC. The core innovation of QDAC lies in its end-to-end training of an ASR-based auto-regressive network with a GAN, which achieves superior semantic feature disentanglement for scalable, near-lossless compression. QTTS models these discrete codes using two innovative strategies: the Hierarchical Parallel architecture, which uses a dual-AR structure to model inter-codebook dependencies for higher-quality synthesis, and the Delay Multihead approach, which employs parallelized prediction with a fixed delay to accelerate inference speed. Our experiments demonstrate that the proposed framework achieves higher synthesis quality and better preserves expressive content compared to baseline. This suggests that scaling up compression via multi-codebook modeling is a promising direction for high-fidelity, general-purpose speech and audio generation.

cs.SD

Discrete Hamiltonian-Assisted Metropolis Sampling

Gradient-based Markov Chain Monte Carlo methods have recently received much attention for sampling discrete distributions, with interesting connections to their continuous counterparts. For examples, there are two discrete analogues to the Metropolis-adjusted Langevin Algorithm (MALA). As motivated by Hamiltonian-Assisted Metropolis Sampling (HAMS), we propose Discrete HAMS (DHAMS), a discrete sampler which, for the first time, not only exploits gradient information but also incorporates a Gaussian momentum variable and samples a Hamiltonian as an augmented distribution. DHAMS is derived through several steps, including an auxiliary-variable proposal scheme, negation and gradient correction for the momentum variable, and over-relaxation for the state variable. Two distinctive properties are achieved simultaneously. One is generalized detailed balance, which enables irreversible exploration of the target distribution. The other is a rejection-free property for a target distribution with a linear potential function. In experiments involving both ordinal and binary distributions, DHAMS algorithms consistently yield superior performance compared with existing algorithms.

stat.ME

Photonics for Neuromorphic Computing: Fundamentals, Devices, and Opportunities

In the dynamic landscape of Artificial Intelligence (AI), two notable phenomena are becoming predominant: the exponential growth of large AI model sizes and the explosion of massive amount of data. Meanwhile, scientific research such as quantum computing and protein synthesis increasingly demand higher computing capacities. Neuromorphic computing, inspired by the mechanism and functionality of human brains, uses physical artificial neurons to do computations and is drawing widespread attention. Conventional electronic computing has experienced certain difficulties, particularly concerning the latency, crosstalk, and energy consumption of digital processors. As the Moore's law approaches its terminus, there is a urgent need for alternative computing architectures that can satisfy this growing computing demand and break through the von Neumann model. Recently, the expansion of optoelectronic devices on photonic integration platforms has led to significant growth in photonic computing, where photonic integrated circuits (PICs) have enabled ultrafast artificial neural networks (ANN) with sub-nanosecond latencies, low heat dissipation, and high parallelism. Such non-von Neumann photonic computing systems hold the promise to cater to the escalating requirements of AI and scientific computing. In this review, we study recent advancements in integrated photonic neuromorphic systems, and from the perspective of materials and device engineering, we lay out the scientific and technological breakthroughs necessary to advance the state-of-the-art. In particular, we examine various technologies and devices employed in neuromorphic photonic AI accelerators, spanning from traditional optics to PICs. We evaluate the performances of different designs by energy efficiency in operations per joule (OP/J) and compute density in operations per squared millimeter per ...

physics.optics