arXiv subjects

Zaiqiao Meng

Publications and source records attributed to Zaiqiao Meng.

At least 37 records · Page 2Linked to original sources

arXiv2025

Grounding Chest X-Ray Visual Question Answering with Generated Radiology Reports

We present a novel approach to Chest X-ray (CXR) Visual Question Answering (VQA), addressing both single-image image-difference questions. Single-image questions focus on abnormalities within a specific CXR ("What abnormalities are seen in image X?"), while image-difference questions compare two longitudinal CXRs acquired at different time points ("What are the differences between image X and Y?"). We further explore how the integration of radiology reports can enhance the performance of VQA models. While previous approaches have demonstrated the utility of radiology reports during the pre-training phase, we extend this idea by showing that the reports can also be leveraged as additional input to improve the VQA model's predicted answers. First, we propose a unified method that handles both types of questions and auto-regressively generates the answers. For single-image questions, the model is provided with a single CXR. For image-difference questions, the model is provided with two CXRs from the same patient, captured at different time points, enabling the model to detect and describe temporal changes. Taking inspiration from 'Chain-of-Thought reasoning', we demonstrate that performance on the CXR VQA task can be improved by grounding the answer generator module with a radiology report predicted for the same CXR. In our approach, the VQA model is divided into two steps: i) Report Generation (RG) and ii) Answer Generation (AG). Our results demonstrate that incorporating predicted radiology reports as evidence to the AG model enhances performance on both single-image and image-difference questions, achieving state-of-the-art results on the Medical-Diff-VQA dataset.

cs.CV↗

arXiv2025

Can We Edit LLMs for Long-Tail Biomedical Knowledge?

Knowledge editing has emerged as an effective approach for updating large language models (LLMs) by modifying their internal knowledge. However, their application to the biomedical domain faces unique challenges due to the long-tailed distribution of biomedical knowledge, where rare and infrequent information is prevalent. In this paper, we conduct the first comprehensive study to investigate the effectiveness of knowledge editing methods for editing long-tail biomedical knowledge. Our results indicate that, while existing editing methods can enhance LLMs' performance on long-tail biomedical knowledge, their performance on long-tail knowledge remains inferior to that on high-frequency popular knowledge, even after editing. Our further analysis reveals that long-tail biomedical knowledge contains a significant amount of one-to-many knowledge, where one subject and relation link to multiple objects. This high prevalence of one-to-many knowledge limits the effectiveness of knowledge editing in improving LLMs' understanding of long-tail biomedical knowledge, highlighting the need for tailored strategies to bridge this performance gap.

cs.CL↗

arXiv2025

KiRAG: Knowledge-Driven Iterative Retriever for Enhancing Retrieval-Augmented Generation

Iterative retrieval-augmented generation (iRAG) models offer an effective approach for multi-hop question answering (QA). However, their retrieval process faces two key challenges: (1) it can be disrupted by irrelevant documents or factually inaccurate chain-of-thoughts; (2) their retrievers are not designed to dynamically adapt to the evolving information needs in multi-step reasoning, making it difficult to identify and retrieve the missing information required at each iterative step. Therefore, we propose KiRAG, which uses a knowledge-driven iterative retriever model to enhance the retrieval process of iRAG. Specifically, KiRAG decomposes documents into knowledge triples and performs iterative retrieval with these triples to enable a factually reliable retrieval process. Moreover, KiRAG integrates reasoning into the retrieval process to dynamically identify and retrieve knowledge that bridges information gaps, effectively adapting to the evolving information needs. Empirical results show that KiRAG significantly outperforms existing iRAG models, with an average improvement of 9.40% in R@3 and 5.14% in F1 on multi-hop QA.

cs.CL↗

arXiv2025

Libra: Leveraging Temporal Images for Biomedical Radiology Analysis

Radiology report generation (RRG) requires advanced medical image analysis, effective temporal reasoning, and accurate text generation. While multimodal large language models (MLLMs) align with pre-trained vision encoders to enhance visual-language understanding, most existing methods rely on single-image analysis or rule-based heuristics to process multiple images, failing to fully leverage temporal information in multi-modal medical datasets. In this paper, we introduce Libra, a temporal-aware MLLM tailored for chest X-ray report generation. Libra combines a radiology-specific image encoder with a novel Temporal Alignment Connector (TAC), designed to accurately capture and integrate temporal differences between paired current and prior images. Extensive experiments on the MIMIC-CXR dataset demonstrate that Libra establishes a new state-of-the-art benchmark among similarly scaled MLLMs, setting new standards in both clinical relevance and lexical accuracy.

cs.CV↗

arXiv2025

KEIR @ ECIR 2025: The Second Workshop on Knowledge-Enhanced Information Retrieval

Pretrained language models (PLMs) like BERT and GPT-4 have become the foundation for modern information retrieval (IR) systems. However, existing PLM-based IR models primarily rely on the knowledge learned during training for prediction, limiting their ability to access and incorporate external, up-to-date, or domain-specific information. Therefore, current information retrieval systems struggle with semantic nuances, context relevance, and domain-specific issues. To address these challenges, we propose the second Knowledge-Enhanced Information Retrieval workshop (KEIR @ ECIR 2025) as a platform to discuss innovative approaches that integrate external knowledge, aiming to enhance the effectiveness of information retrieval in a rapidly evolving technological landscape. The goal of this workshop is to bring together researchers from academia and industry to discuss various aspects of knowledge-enhanced information retrieval.

cs.IR↗

arXiv2024

On the Structural Memory of LLM Agents

Memory plays a pivotal role in enabling large language model~(LLM)-based agents to engage in complex and long-term interactions, such as question answering (QA) and dialogue systems. While various memory modules have been proposed for these tasks, the impact of different memory structures across tasks remains insufficiently explored. This paper investigates how memory structures and memory retrieval methods affect the performance of LLM-based agents. Specifically, we evaluate four types of memory structures, including chunks, knowledge triples, atomic facts, and summaries, along with mixed memory that combines these components. In addition, we evaluate three widely used memory retrieval methods: single-step retrieval, reranking, and iterative retrieval. Extensive experiments conducted across four tasks and six datasets yield the following key insights: (1) Different memory structures offer distinct advantages, enabling them to be tailored to specific tasks; (2) Mixed memory structures demonstrate remarkable resilience in noisy environments; (3) Iterative retrieval consistently outperforms other methods across various scenarios. Our investigation aims to inspire further research into the design of memory systems for LLM-based agents.

cs.CL↗

arXiv2024

Gla-AI4BioMed at RRG24: Visual Instruction-tuned Adaptation for Radiology Report Generation

We introduce a radiology-focused visual language model designed to generate radiology reports from chest X-rays. Building on previous findings that large language models (LLMs) can acquire multimodal capabilities when aligned with pretrained vision encoders, we demonstrate similar potential with chest X-ray images. This integration enhances the ability of model to understand and describe chest X-ray images. Our model combines an image encoder with a fine-tuned LLM based on the Vicuna-7B architecture, enabling it to generate different sections of a radiology report with notable accuracy. The training process involves a two-stage approach: (i) initial alignment of chest X-ray features with the LLM (ii) followed by fine-tuning for radiology report generation.

cs.CV↗

arXiv2024

CLCE: An Approach to Refining Cross-Entropy and Contrastive Learning for Optimized Learning Fusion

State-of-the-art pre-trained image models predominantly adopt a two-stage approach: initial unsupervised pre-training on large-scale datasets followed by task-specific fine-tuning using Cross-Entropy loss~(CE). However, it has been demonstrated that CE can compromise model generalization and stability. While recent works employing contrastive learning address some of these limitations by enhancing the quality of embeddings and producing better decision boundaries, they often overlook the importance of hard negative mining and rely on resource intensive and slow training using large sample batches. To counter these issues, we introduce a novel approach named CLCE, which integrates Label-Aware Contrastive Learning with CE. Our approach not only maintains the strengths of both loss functions but also leverages hard negative mining in a synergistic way to enhance performance. Experimental results demonstrate that CLCE significantly outperforms CE in Top-1 accuracy across twelve benchmarks, achieving gains of up to 3.52% in few-shot learning scenarios and 3.41% in transfer learning settings with the BEiT-3 model. Importantly, our proposed CLCE approach effectively mitigates the dependency of contrastive learning on large batch sizes such as 4096 samples per batch, a limitation that has previously constrained the application of contrastive learning in budget-limited hardware environments.

cs.CV↗

arXiv2024

Sparkles: Unlocking Chats Across Multiple Images for Multimodal Instruction-Following Models

Large language models exhibit enhanced zero-shot performance on various tasks when fine-tuned with instruction-following data. Multimodal instruction-following models extend these capabilities by integrating both text and images. However, existing models such as MiniGPT-4 and LLaVA face challenges in maintaining dialogue coherence in scenarios involving multiple images. A primary reason is the lack of a specialized dataset for this critical application. To bridge these gaps, we introduce SparklesDialogue, the first machine-generated dialogue dataset tailored for word-level interleaved multi-image and text interactions. Furthermore, we construct SparklesEval, a GPT-assisted benchmark for quantitatively assessing a model's conversational competence across multiple images and dialogue turns. We then present SparklesChat, a multimodal instruction-following model for open-ended dialogues across multiple images. Our experiments validate the effectiveness of training SparklesChat with SparklesDialogue based on MiniGPT-4 and LLaVA-v1.5, which enhances comprehension across multiple images and dialogue turns, and does not compromise single-image understanding capabilities. Qualitative evaluations further demonstrate SparklesChat's generality in handling real-world applications. All resources related to this study are publicly available at https://github.com/HYPJUDY/Sparkles.

cs.CV↗

arXiv2024

I Know About "Up"! Enhancing Spatial Reasoning in Visual Language Models Through 3D Reconstruction

Visual Language Models (VLMs) are essential for various tasks, particularly visual reasoning tasks, due to their robust multi-modal information integration, visual reasoning capabilities, and contextual awareness. However, existing \VLMs{}' visual spatial reasoning capabilities are often inadequate, struggling even with basic tasks such as distinguishing left from right. To address this, we propose the \ours{} model, designed to enhance the visual spatial reasoning abilities of VLMS. ZeroVLM employs Zero-1-to-3, a 3D reconstruction model for obtaining different views of the input images and incorporates a prompting mechanism to further improve visual spatial reasoning. Experimental results on four visual spatial reasoning datasets show that our \ours{} achieves up to 19.48% accuracy improvement, which indicates the effectiveness of the 3D reconstruction and prompting mechanisms of our ZeroVLM.

cs.CL↗

arXiv2024

COFFEE: A Contrastive Oracle-Free Framework for Event Extraction

Event extraction is a complex information extraction task that involves extracting events from unstructured text. Prior classification-based methods require comprehensive entity annotations for joint training, while newer generation-based methods rely on heuristic templates containing oracle information such as event type, which is often unavailable in real-world scenarios. In this study, we consider a more realistic setting of this task, namely the Oracle-Free Event Extraction (OFEE) task, where only the input context is given without any oracle information, including event type, event ontology and trigger word. To solve this task, we propose a new framework, called COFFEE, which extracts the events solely based on the document context without referring to any oracle information. In particular, a contrastive selection model is introduced in COFFEE to rectify the generated triggers and handle multi-event instances. The proposed COFFEE outperforms state-of-the-art approaches under the oracle-free setting of the event extraction task, as evaluated on a public event extraction benchmark ACE05.

cs.CL↗

arXiv2024

Attention Instruction: Amplifying Attention in the Middle via Prompting

The context window of large language models has been extended to 128k tokens or more. However, language models still suffer from position bias and have difficulty in accessing and using the middle part of the context due to the lack of attention. We examine the relative position awareness of LLMs and the feasibility of mitigating disproportional attention through prompting. We augment the original task instruction with $\texttt{attention instructions}$ that direct language models to allocate more attention towards a selected segment of the context. We conduct a comprehensive investigation on multi-document question answering task with both position-based and index-based instructions. We find that language models do not have relative position awareness of the context. Nevertheless, they demonstrate the capacity to adapt attention to a specific segment using matching indexes. Our analysis contributes to a deeper understanding of position bias in LLMs and provides a pathway to mitigate this bias by instruction, thus benefiting LLMs in locating and utilizing relevant information from retrieved documents in RAG applications.

cs.CL↗

arXiv2024

TRACE the Evidence: Constructing Knowledge-Grounded Reasoning Chains for Retrieval-Augmented Generation

Retrieval-augmented generation (RAG) offers an effective approach for addressing question answering (QA) tasks. However, the imperfections of the retrievers in RAG models often result in the retrieval of irrelevant information, which could introduce noises and degrade the performance, especially when handling multi-hop questions that require multiple steps of reasoning. To enhance the multi-hop reasoning ability of RAG models, we propose TRACE. TRACE constructs knowledge-grounded reasoning chains, which are a series of logically connected knowledge triples, to identify and integrate supporting evidence from the retrieved documents for answering questions. Specifically, TRACE employs a KG Generator to create a knowledge graph (KG) from the retrieved documents, and then uses an Autoregressive Reasoning Chain Constructor to build reasoning chains. Experimental results on three multi-hop QA datasets show that TRACE achieves an average performance improvement of up to 14.03% compared to using all the retrieved documents. Moreover, the results indicate that using reasoning chains as context, rather than the entire documents, is often sufficient to correctly answer questions.

cs.CL↗

arXiv2024

To Generate or to Retrieve? On the Effectiveness of Artificial Contexts for Medical Open-Domain Question Answering

Medical open-domain question answering demands substantial access to specialized knowledge. Recent efforts have sought to decouple knowledge from model parameters, counteracting architectural scaling and allowing for training on common low-resource hardware. The retrieve-then-read paradigm has become ubiquitous, with model predictions grounded on relevant knowledge pieces from external repositories such as PubMed, textbooks, and UMLS. An alternative path, still under-explored but made possible by the advent of domain-specific large language models, entails constructing artificial contexts through prompting. As a result, "to generate or to retrieve" is the modern equivalent of Hamlet's dilemma. This paper presents MedGENIE, the first generate-then-read framework for multiple-choice question answering in medicine. We conduct extensive experiments on MedQA-USMLE, MedMCQA, and MMLU, incorporating a practical perspective by assuming a maximum of 24GB VRAM. MedGENIE sets a new state-of-the-art in the open-book setting of each testbed, allowing a small-scale reader to outcompete zero-shot closed-book 175B baselines while using up to 706$\times$ fewer parameters. Our findings reveal that generated passages are more effective than retrieved ones in attaining higher accuracy.

cs.CL↗

arXiv2024

Weakly Supervised Deep Hyperspherical Quantization for Image Retrieval

Deep quantization methods have shown high efficiency on large-scale image retrieval. However, current models heavily rely on ground-truth information, hindering the application of quantization in label-hungry scenarios. A more realistic demand is to learn from inexhaustible uploaded images that are associated with informal tags provided by amateur users. Though such sketchy tags do not obviously reveal the labels, they actually contain useful semantic information for supervising deep quantization. To this end, we propose Weakly-Supervised Deep Hyperspherical Quantization (WSDHQ), which is the first work to learn deep quantization from weakly tagged images. Specifically, 1) we use word embeddings to represent the tags and enhance their semantic information based on a tag correlation graph. 2) To better preserve semantic information in quantization codes and reduce quantization error, we jointly learn semantics-preserving embeddings and supervised quantizer on hypersphere by employing a well-designed fusion layer and tailor-made loss functions. Extensive experiments show that WSDHQ can achieve state-of-art performance on weakly-supervised compact coding. Code is available at https://github.com/gimpong/AAAI21-WSDHQ.

cs.CV↗

arXiv2024

CLEX: Continuous Length Extrapolation for Large Language Models

Transformer-based Large Language Models (LLMs) are pioneering advances in many natural language processing tasks, however, their exceptional capabilities are restricted within the preset context window of Transformer. Position Embedding (PE) scaling methods, while effective in extending the context window to a specific length, demonstrate either notable limitations in their extrapolation abilities or sacrificing partial performance within the context window. Length extrapolation methods, although theoretically capable of extending the context window beyond the training sequence length, often underperform in practical long-context applications. To address these challenges, we propose Continuous Length EXtrapolation (CLEX) for LLMs. We generalise the PE scaling approaches to model the continuous dynamics by ordinary differential equations over the length scaling factor, thereby overcoming the constraints of current PE scaling methods designed for specific lengths. Moreover, by extending the dynamics to desired context lengths beyond the training sequence length, CLEX facilitates the length extrapolation with impressive performance in practical tasks. We demonstrate that CLEX can be seamlessly incorporated into LLMs equipped with Rotary Position Embedding, such as LLaMA and GPT-NeoX, with negligible impact on training and inference latency. Experimental results reveal that CLEX can effectively extend the context window to over 4x or almost 8x training length, with no deterioration in performance. Furthermore, when evaluated on the practical LongBench benchmark, our model trained on a 4k length exhibits competitive performance against state-of-the-art open-source models trained on context lengths up to 32k. Our code is available at https://github.com/DAMO-NLP-SG/CLEX.

cs.CL↗

arXiv2024

Multimodality Representation Learning: A Survey on Evolution, Pretraining and Its Applications

Multimodality Representation Learning, as a technique of learning to embed information from different modalities and their correlations, has achieved remarkable success on a variety of applications, such as Visual Question Answering (VQA), Natural Language for Visual Reasoning (NLVR), and Vision Language Retrieval (VLR). Among these applications, cross-modal interaction and complementary information from different modalities are crucial for advanced models to perform any multimodal task, e.g., understand, recognize, retrieve, or generate optimally. Researchers have proposed diverse methods to address these tasks. The different variants of transformer-based architectures performed extraordinarily on multiple modalities. This survey presents the comprehensive literature on the evolution and enhancement of deep learning multimodal architectures to deal with textual, visual and audio features for diverse cross-modal and modern multimodal tasks. This study summarizes the (i) recent task-specific deep learning methodologies, (ii) the pretraining types and multimodal pretraining objectives, (iii) from state-of-the-art pretrained multimodal approaches to unifying architectures, and (iv) multimodal task categories and possible future improvements that can be devised for better multimodal learning. Moreover, we prepare a dataset section for new researchers that covers most of the benchmarks for pretraining and finetuning. Finally, major challenges, gaps, and potential research topics are explored. A constantly-updated paperlist related to our survey is maintained at https://github.com/marslanm/multimodality-representation-learning.

cs.AI↗

arXiv2024

LaCViT: A Label-aware Contrastive Fine-tuning Framework for Vision Transformers

Vision Transformers (ViTs) have emerged as popular models in computer vision, demonstrating state-of-the-art performance across various tasks. This success typically follows a two-stage strategy involving pre-training on large-scale datasets using self-supervised signals, such as masked random patches, followed by fine-tuning on task-specific labeled datasets with cross-entropy loss. However, this reliance on cross-entropy loss has been identified as a limiting factor in ViTs, affecting their generalization and transferability to downstream tasks. Addressing this critical challenge, we introduce a novel Label-aware Contrastive Training framework, LaCViT, which significantly enhances the quality of embeddings in ViTs. LaCViT not only addresses the limitations of cross-entropy loss but also facilitates more effective transfer learning across diverse image classification tasks. Our comprehensive experiments on eight standard image classification datasets reveal that LaCViT statistically significantly enhances the performance of three evaluated ViTs by up-to 10.78% under Top-1 Accuracy.

cs.CV↗