arXiv subjects

Zehong Wang

Publications and source records attributed to Zehong Wang.

51 records · Page 3Linked to original sources

arXiv2025

Graph Foundation Models: A Comprehensive Survey

Graph-structured data pervades domains such as social networks, biological systems, knowledge graphs, and recommender systems. While foundation models have transformed natural language processing, vision, and multimodal learning through large-scale pretraining and generalization, extending these capabilities to graphs -- characterized by non-Euclidean structures and complex relational semantics -- poses unique challenges and opens new opportunities. To this end, Graph Foundation Models (GFMs) aim to bring scalable, general-purpose intelligence to structured data, enabling broad transfer across graph-centric tasks and domains. This survey provides a comprehensive overview of GFMs, unifying diverse efforts under a modular framework comprising three key components: backbone architectures, pretraining strategies, and adaptation mechanisms. We categorize GFMs by their generalization scope -- universal, task-specific, and domain-specific -- and review representative methods, key innovations, and theoretical insights within each category. Beyond methodology, we examine theoretical foundations including transferability and emergent capabilities, and highlight key challenges such as structural alignment, heterogeneity, scalability, and evaluation. Positioned at the intersection of graph learning and general-purpose AI, GFMs are poised to become foundational infrastructure for open-ended reasoning over structured data. This survey consolidates current progress and outlines future directions to guide research in this rapidly evolving field. Resources are available at https://github.com/Zehong-Wang/Awesome-Foundation-Models-on-Graphs.

cs.LG↗

arXiv2025

AutoData: A Multi-Agent System for Open Web Data Collection

The exponential growth of data-driven systems and AI technologies has intensified the demand for high-quality web-sourced datasets. While existing datasets have proven valuable, conventional web data collection approaches face significant limitations in terms of human effort and scalability. Current data-collecting solutions fall into two categories: wrapper-based methods that struggle with adaptability and reproducibility, and large language model (LLM)-based approaches that incur substantial computational and financial costs. To address these challenges, we propose AutoData, a novel multi-agent system for Automated web Data collection, that requires minimal human intervention, i.e., only necessitating a natural language instruction specifying the desired dataset. In addition, AutoData is designed with a robust multi-agent architecture, featuring a novel oriented message hypergraph coordinated by a central task manager, to efficiently organize agents across research and development squads. Besides, we introduce a novel hypergraph cache system to advance the multi-agent collaboration process that enables efficient automated data collection and mitigates the token cost issues prevalent in existing LLM-based systems. Moreover, we introduce Instruct2DS, a new benchmark dataset supporting live data collection from web sources across three domains: academic, finance, and sports. Comprehensive evaluations over Instruct2DS and three existing benchmark datasets demonstrate AutoData's superior performance compared to baseline methods. Case studies on challenging tasks such as picture book collection and paper extraction from surveys further validate its applicability. Our source code and dataset are available at https://github.com/GraphResearcher/AutoData.

cs.IR↗

arXiv2025

LLM-Empowered Class Imbalanced Graph Prompt Learning for Online Drug Trafficking Detection

As the market for illicit drugs remains extremely profitable, major online platforms have become direct-to-consumer intermediaries for illicit drug trafficking participants. These online activities raise significant social concerns that require immediate actions. Existing approaches to combating this challenge are generally impractical, due to the imbalance of classes and scarcity of labeled samples in real-world applications. To this end, we propose a novel Large Language Model-empowered Heterogeneous Graph Prompt Learning framework for illicit Drug Trafficking detection, called LLM-HetGDT, that leverages LLM to facilitate heterogeneous graph neural networks (HGNNs) to effectively identify drug trafficking activities in the class-imbalanced scenarios. Specifically, we first pre-train HGNN over a contrastive pretext task to capture the inherent node and structure information over the unlabeled drug trafficking heterogeneous graph (HG). Afterward, we employ LLM to augment the HG by generating high-quality synthetic user nodes in minority classes. Then, we fine-tune the soft prompts on the augmented HG to capture the important information in the minority classes for the downstream drug trafficking detection task. To comprehensively study online illicit drug trafficking activities, we collect a new HG dataset over Twitter, called Twitter-HetDrug. Extensive experiments on this dataset demonstrate the effectiveness, efficiency, and applicability of LLM-HetGDT.

cs.LG↗

arXiv2025

Can LLMs Convert Graphs to Text-Attributed Graphs?

Graphs are ubiquitous structures found in numerous real-world applications, such as drug discovery, recommender systems, and social network analysis. To model graph-structured data, graph neural networks (GNNs) have become a popular tool. However, existing GNN architectures encounter challenges in cross-graph learning where multiple graphs have different feature spaces. To address this, recent approaches introduce text-attributed graphs (TAGs), where each node is associated with a textual description, which can be projected into a unified feature space using textual encoders. While promising, this method relies heavily on the availability of text-attributed graph data, which is difficult to obtain in practice. To bridge this gap, we propose a novel method named Topology-Aware Node description Synthesis (TANS), leveraging large language models (LLMs) to convert existing graphs into text-attributed graphs. The key idea is to integrate topological information into LLMs to explain how graph topology influences node semantics. We evaluate our TANS on text-rich, text-limited, and text-free graphs, demonstrating its applicability. Notably, on text-free graphs, our method significantly outperforms existing approaches that manually design node features, showcasing the potential of LLMs for preprocessing graph-structured data in the absence of textual information. The code and data are available at https://github.com/Zehong-Wang/TANS.

cs.CL↗

arXiv2024

NGQA: A Nutritional Graph Question Answering Benchmark for Personalized Health-aware Nutritional Reasoning

Diet plays a critical role in human health, yet tailoring dietary reasoning to individual health conditions remains a major challenge. Nutrition Question Answering (QA) has emerged as a popular method for addressing this problem. However, current research faces two critical limitations. On one hand, the absence of datasets involving user-specific medical information severely limits \textit{personalization}. This challenge is further compounded by the wide variability in individual health needs. On the other hand, while large language models (LLMs), a popular solution for this task, demonstrate strong reasoning abilities, they struggle with the domain-specific complexities of personalized healthy dietary reasoning, and existing benchmarks fail to capture these challenges. To address these gaps, we introduce the Nutritional Graph Question Answering (NGQA) benchmark, the first graph question answering dataset designed for personalized nutritional health reasoning. NGQA leverages data from the National Health and Nutrition Examination Survey (NHANES) and the Food and Nutrient Database for Dietary Studies (FNDDS) to evaluate whether a food is healthy for a specific user, supported by explanations of the key contributing nutrients. The benchmark incorporates three question complexity settings and evaluates reasoning across three downstream tasks. Extensive experiments with LLM backbones and baseline models demonstrate that the NGQA benchmark effectively challenges existing models. In sum, NGQA addresses a critical real-world problem while advancing GraphQA research with a novel domain-specific benchmark.

cs.CL↗

arXiv2024

MOPI-HFRS: A Multi-objective Personalized Health-aware Food Recommendation System with LLM-enhanced Interpretation

The prevalence of unhealthy eating habits has become an increasingly concerning issue in the United States. However, major food recommendation platforms (e.g., Yelp) continue to prioritize users' dietary preferences over the healthiness of their choices. Although efforts have been made to develop health-aware food recommendation systems, the personalization of such systems based on users' specific health conditions remains under-explored. In addition, few research focus on the interpretability of these systems, which hinders users from assessing the reliability of recommendations and impedes the practical deployment of these systems. In response to this gap, we first establish two large-scale personalized health-aware food recommendation benchmarks at the first attempt. We then develop a novel framework, Multi-Objective Personalized Interpretable Health-aware Food Recommendation System (MOPI-HFRS), which provides food recommendations by jointly optimizing the three objectives: user preference, personalized healthiness and nutritional diversity, along with an large language model (LLM)-enhanced reasoning module to promote healthy dietary knowledge through the interpretation of recommended results. Specifically, this holistic graph learning framework first utilizes two structure learning and a structure pooling modules to leverage both descriptive features and health data. Then it employs Pareto optimization to achieve designed multi-facet objectives. Finally, to further promote the healthy dietary knowledge and awareness, we exploit an LLM by utilizing knowledge-infusion, prompting the LLMs with knowledge obtained from the recommendation model for interpretation.

cs.IR↗

arXiv2024

SimMLP: Training MLPs on Graphs without Supervision

Graph Neural Networks (GNNs) have demonstrated their effectiveness in various graph learning tasks, yet their reliance on neighborhood aggregation during inference poses challenges for deployment in latency-sensitive applications, such as real-time financial fraud detection. To address this limitation, recent studies have proposed distilling knowledge from teacher GNNs into student Multi-Layer Perceptrons (MLPs) trained on node content, aiming to accelerate inference. However, these approaches often inadequately explore structural information when inferring unseen nodes. To this end, we introduce SimMLP, a Self-supervised framework for learning MLPs on graphs, designed to fully integrate rich structural information into MLPs. Notably, SimMLP is the first MLP-learning method that can achieve equivalence to GNNs in the optimal case. The key idea is to employ self-supervised learning to align the representations encoded by graph context-aware GNNs and neighborhood dependency-free MLPs, thereby fully integrating the structural information into MLPs. We provide a comprehensive theoretical analysis, demonstrating the equivalence between SimMLP and GNNs based on mutual information and inductive bias, highlighting SimMLP's advanced structural learning capabilities. Additionally, we conduct extensive experiments on 20 benchmark datasets, covering node classification, link prediction, and graph classification, to showcase SimMLP's superiority over state-of-the-art baselines, particularly in scenarios involving unseen nodes (e.g., inductive and cold-start node classification) where structural insights are crucial. Our codes are available at: https://github.com/Zehong-Wang/SimMLP.

cs.LG↗

arXiv2024

Training MLPs on Graphs without Supervision

cs.LG↗

arXiv2024

GFT: Graph Foundation Model with Transferable Tree Vocabulary

Inspired by the success of foundation models in applications such as ChatGPT, as graph data has been ubiquitous, one can envision the far-reaching impacts that can be brought by Graph Foundation Models (GFMs) with broader applications in the areas such as scientific research, social network analysis, drug discovery, and e-commerce. Despite the significant progress of pre-trained graph neural networks, there haven't been GFMs that can achieve desired performance on various graph-learning-related tasks. Building GFMs may rely on a vocabulary that encodes transferable patterns shared among different tasks and domains. Unlike image and text, defining such transferable patterns for graphs remains an open question. In this paper, we aim to bridge this gap by rethinking the transferable patterns on graphs as computation trees -- i.e., tree structures derived from the message-passing process. Based on this insight, we propose a cross-task, cross-domain graph foundation model named GFT, short for Graph Foundation model with transferable Tree vocabulary. By treating computation trees as tokens within the transferable vocabulary, GFT improves model generalization and reduces the risk of negative transfer. The theoretical analyses and extensive experimental studies have demonstrated the transferability of computation trees and shown the effectiveness of GFT across diverse tasks and domains in graph learning. The open source code and data are available at https://github.com/Zehong-Wang/GFT.

cs.LG↗

arXiv2024

Multiagent Multitraversal Multimodal Self-Driving: Open MARS Dataset

Large-scale datasets have fueled recent advancements in AI-based autonomous vehicle research. However, these datasets are usually collected from a single vehicle's one-time pass of a certain location, lacking multiagent interactions or repeated traversals of the same place. Such information could lead to transformative enhancements in autonomous vehicles' perception, prediction, and planning capabilities. To bridge this gap, in collaboration with the self-driving company May Mobility, we present the MARS dataset which unifies scenarios that enable MultiAgent, multitraveRSal, and multimodal autonomous vehicle research. More specifically, MARS is collected with a fleet of autonomous vehicles driving within a certain geographical area. Each vehicle has its own route and different vehicles may appear at nearby locations. Each vehicle is equipped with a LiDAR and surround-view RGB cameras. We curate two subsets in MARS: one facilitates collaborative driving with multiple vehicles simultaneously present at the same location, and the other enables memory retrospection through asynchronous traversals of the same location by multiple vehicles. We conduct experiments in place recognition and neural reconstruction. More importantly, MARS introduces new research opportunities and challenges such as multitraversal 3D reconstruction, multiagent perception, and unsupervised object discovery. Our data and codes can be found at https://ai4ce.github.io/MARS/.

cs.CV↗

arXiv2024

Memorize What Matters: Emergent Scene Decomposition from Multitraverse

Humans naturally retain memories of permanent elements, while ephemeral moments often slip through the cracks of memory. This selective retention is crucial for robotic perception, localization, and mapping. To endow robots with this capability, we introduce 3D Gaussian Mapping (3DGM), a self-supervised, camera-only offline mapping framework grounded in 3D Gaussian Splatting. 3DGM converts multitraverse RGB videos from the same region into a Gaussian-based environmental map while concurrently performing 2D ephemeral object segmentation. Our key observation is that the environment remains consistent across traversals, while objects frequently change. This allows us to exploit self-supervision from repeated traversals to achieve environment-object decomposition. More specifically, 3DGM formulates multitraverse environmental mapping as a robust differentiable rendering problem, treating pixels of the environment and objects as inliers and outliers, respectively. Using robust feature distillation, feature residuals mining, and robust optimization, 3DGM jointly performs 2D segmentation and 3D mapping without human intervention. We build the Mapverse benchmark, sourced from the Ithaca365 and nuPlan datasets, to evaluate our method in unsupervised 2D segmentation, 3D reconstruction, and neural rendering. Extensive results verify the effectiveness and potential of our method for self-driving and robotics.

cs.CV↗

arXiv2024

Subgraph Pooling: Tackling Negative Transfer on Graphs

Transfer learning aims to enhance performance on a target task by using knowledge from related tasks. However, when the source and target tasks are not closely aligned, it can lead to reduced performance, known as negative transfer. Unlike in image or text data, we find that negative transfer could commonly occur in graph-structured data, even when source and target graphs have semantic similarities. Specifically, we identify that structural differences significantly amplify the dissimilarities in the node embeddings across graphs. To mitigate this, we bring a new insight in this paper: for semantically similar graphs, although structural differences lead to significant distribution shift in node embeddings, their impact on subgraph embeddings could be marginal. Building on this insight, we introduce Subgraph Pooling (SP) by aggregating nodes sampled from a k-hop neighborhood and Subgraph Pooling++ (SP++) by a random walk, to mitigate the impact of graph structural differences on knowledge transfer. We theoretically analyze the role of SP in reducing graph discrepancy and conduct extensive experiments to evaluate its superiority under various settings. The proposed SP methods are effective yet elegant, which can be easily applied on top of any backbone Graph Neural Networks (GNNs). Our code and data are available at: https://github.com/Zehong-Wang/Subgraph-Pooling.

cs.LG↗

arXiv2024

Diet-ODIN: A Novel Framework for Opioid Misuse Detection with Interpretable Dietary Patterns

The opioid crisis has been one of the most critical society concerns in the United States. Although the medication assisted treatment (MAT) is recognized as the most effective treatment for opioid misuse and addiction, the various side effects can trigger opioid relapse. In addition to MAT, the dietary nutrition intervention has been demonstrated its importance in opioid misuse prevention and recovery. However, research on the alarming connections between dietary patterns and opioid misuse remain under-explored. In response to this gap, in this paper, we first establish a large-scale multifaceted dietary benchmark dataset related to opioid users at the first attempt and then develop a novel framework - i.e., namely Opioid Misuse Detection with Interpretable Dietary Patterns (Diet-ODIN) - to bridge heterogeneous graph (HG) and large language model (LLM) for the identification of users with opioid misuse and the interpretation of their associated dietary patterns. Specifically, in Diet-ODIN, we first construct an HG to comprehensively incorporate both dietary and health-related information, and then we devise a holistic graph learning framework with noise reduction to fully capitalize both users' individual dietary habits and shared dietary patterns for the detection of users with opioid misuse. To further delve into the intricate correlations between dietary patterns and opioid misuse, we exploit an LLM by utilizing the knowledge obtained from the graph learning model for interpretation. The extensive experimental results based on our established benchmark with quantitative and qualitative measures demonstrate the outstanding performance of Diet-ODIN in exploring the complex interplay between opioid misuse and dietary patterns, by comparison with state-of-the-art baseline methods.

cs.LG↗

arXiv2023

TPGNN: Learning High-order Information in Dynamic Graphs via Temporal Propagation

Temporal graph is an abstraction for modeling dynamic systems that consist of evolving interaction elements. In this paper, we aim to solve an important yet neglected problem -- how to learn information from high-order neighbors in temporal graphs? -- to enhance the informativeness and discriminativeness for the learned node representations. We argue that when learning high-order information from temporal graphs, we encounter two challenges, i.e., computational inefficiency and over-smoothing, that cannot be solved by conventional techniques applied on static graphs. To remedy these deficiencies, we propose a temporal propagation-based graph neural network, namely TPGNN. To be specific, the model consists of two distinct components, i.e., propagator and node-wise encoder. The propagator is leveraged to propagate messages from the anchor node to its temporal neighbors within $k$-hop, and then simultaneously update the state of neighborhoods, which enables efficient computation, especially for a deep model. In addition, to prevent over-smoothing, the model compels the messages from $n$-hop neighbors to update the $n$-hop memory vector preserved on the anchor. The node-wise encoder adopts transformer architecture to learn node representations by explicitly learning the importance of memory vectors preserved on the node itself, that is, implicitly modeling the importance of messages from neighbors at different layers, thus mitigating the over-smoothing. Since the encoding process will not query temporal neighbors, we can dramatically save time consumption in inference. Extensive experiments on temporal link prediction and node classification demonstrate the superiority of TPGNN over state-of-the-art baselines in efficiency and robustness.

cs.LG↗

arXiv2023

Heterogeneous Graph Contrastive Multi-view Learning

Inspired by the success of contrastive learning (CL) in computer vision and natural language processing, graph contrastive learning (GCL) has been developed to learn discriminative node representations on graph datasets. However, the development of GCL on Heterogeneous Information Networks (HINs) is still in the infant stage. For example, it is unclear how to augment the HINs without substantially altering the underlying semantics, and how to design the contrastive objective to fully capture the rich semantics. Moreover, early investigations demonstrate that CL suffers from sampling bias, whereas conventional debiasing techniques are empirically shown to be inadequate for GCL. How to mitigate the sampling bias for heterogeneous GCL is another important problem. To address the aforementioned challenges, we propose a novel Heterogeneous Graph Contrastive Multi-view Learning (HGCML) model. In particular, we use metapaths as the augmentation to generate multiple subgraphs as multi-views, and propose a contrastive objective to maximize the mutual information between any pairs of metapath-induced views. To alleviate the sampling bias, we further propose a positive sampling strategy to explicitly select positives for each node via jointly considering semantic and structural information preserved on each metapath view. Extensive experiments demonstrate HGCML consistently outperforms state-of-the-art baselines on five real-world benchmark datasets.

cs.LG↗