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Zhao Li

Publications and source records attributed to Zhao Li.

At least 55 records · Page 3Linked to original sources

HyCubE: Efficient Knowledge Hypergraph 3D Circular Convolutional Embedding

Knowledge hypergraph embedding models are usually computationally expensive due to the inherent complex semantic information. However, existing works mainly focus on improving the effectiveness of knowledge hypergraph embedding, making the model architecture more complex and redundant. It is desirable and challenging for knowledge hypergraph embedding to reach a trade-off between model effectiveness and efficiency. In this paper, we propose an end-to-end efficient knowledge hypergraph embedding model, HyCubE, which designs a novel 3D circular convolutional neural network and the alternate mask stack strategy to enhance the interaction and extraction of feature information comprehensively. Furthermore, our proposed model achieves a better trade-off between effectiveness and efficiency by adaptively adjusting the 3D circular convolutional layer structure to handle n-ary knowledge tuples of different arities with fewer parameters. In addition, we use a knowledge hypergraph 1-N multilinear scoring way to accelerate the model training efficiency further. Finally, extensive experimental results on all datasets demonstrate that our proposed model consistently outperforms state-of-the-art baselines, with an average improvement of 8.22% and a maximum improvement of 33.82% across all metrics. Meanwhile, HyCubE is 6.12x faster, GPU memory usage is 52.67% lower, and the number of parameters is reduced by 85.21% compared with the average metric of the latest state-of-the-art baselines.

cs.AI↗

Weighted Diversified Sampling for Efficient Data-Driven Single-Cell Gene-Gene Interaction Discovery

Gene-gene interactions play a crucial role in the manifestation of complex human diseases. Uncovering significant gene-gene interactions is a challenging task. Here, we present an innovative approach utilizing data-driven computational tools, leveraging an advanced Transformer model, to unearth noteworthy gene-gene interactions. Despite the efficacy of Transformer models, their parameter intensity presents a bottleneck in data ingestion, hindering data efficiency. To mitigate this, we introduce a novel weighted diversified sampling algorithm. This algorithm computes the diversity score of each data sample in just two passes of the dataset, facilitating efficient subset generation for interaction discovery. Our extensive experimentation demonstrates that by sampling a mere 1\% of the single-cell dataset, we achieve performance comparable to that of utilizing the entire dataset.

cs.AI↗

GPTON: Generative Pre-trained Transformers enhanced with Ontology Narration for accurate annotation of biological data

By leveraging GPT-4 for ontology narration, we developed GPTON to infuse structured knowledge into LLMs through verbalized ontology terms, achieving accurate text and ontology annotations for over 68% of gene sets in the top five predictions. Manual evaluations confirm GPTON's robustness, highlighting its potential to harness LLMs and structured knowledge to significantly advance biomedical research beyond gene set annotation.

q-bio.QM↗

Secure Backscatter Communications Through RIS: Modeling and Performance

Backscatter communication (BC) has emerged as a pivotal wireless communication paradigm owing to its low-power and cost-effective characteristics. However, BC faces various challenges from its low signal detection rate to its security vulnerabilities. Recently, reconfigurable intelligent surfaces (RIS) have surfaced as a transformative technology addressing power and communication performance issues in BC. However, the potential of RIS in addressing the security challenges of BC remains uncharted. This paper investigates the secrecy performance of RIS-aided BC, where all channels are distributed according to the Fisher-Snedecor $\mathcal{F}$ distribution. Specifically, we consider a RIS with $N$ reflecting elements to help a backscatter device (BD) establish a smart environment and enhance the secrecy performance in BC. Due to the nature of BC systems, our analysis considers two possible scenarios (i) in the absence of direct links and (ii) in the presence of direct links. In both cases, we first derive compact analytical expressions of the probability density function (PDF) and cumulative distribution function (CDF) for the received signal-to-noise ratio (SNR) at both a legitimate receiver and an eavesdropper. Then, to analyze the secrecy performance, we further derive analytical expressions of the average secrecy capacity (ASC) and secrecy outage probability (SOP) for both mentioned scenarios. In addition, regarding the importance of system behavior in a high SNR regime, we provide an asymptotic analysis of the SOP and ASC. Eventually, the Monte-Carlo simulation is used to validate the analytical results, revealing that utilizing RIS can greatly improve the secrecy performance of the BC system relative to traditional BC setups that do not incorporate RIS.

cs.IT↗

CL4KGE: A Curriculum Learning Method for Knowledge Graph Embedding

Knowledge graph embedding (KGE) constitutes a foundational task, directed towards learning representations for entities and relations within knowledge graphs (KGs), with the objective of crafting representations comprehensive enough to approximate the logical and symbolic interconnections among entities. In this paper, we define a metric Z-counts to measure the difficulty of training each triple ($<$head entity, relation, tail entity$>$) in KGs with theoretical analysis. Based on this metric, we propose \textbf{CL4KGE}, an efficient \textbf{C}urriculum \textbf{L}earning based training strategy for \textbf{KGE}. This method includes a difficulty measurer and a training scheduler that aids in the training of KGE models. Our approach possesses the flexibility to act as a plugin within a wide range of KGE models, with the added advantage of adaptability to the majority of KGs in existence. The proposed method has been evaluated on popular KGE models, and the results demonstrate that it enhances the state-of-the-art methods. The use of Z-counts as a metric has enabled the identification of challenging triples in KGs, which helps in devising effective training strategies.

cs.AI↗

Performance Analysis of Internet of Vehicles Mesh Networks Based on Actual Switch Models

The rapid growth of the automotive industry has exacerbated the conflict between the complex traffic environment, increasing communication demands, and limited resources. Given the imperative to mitigate traffic and network congestion, analyzing the performance of Internet of Vehicles (IoV) mesh networks is of great practical significance. Most studies focus solely on individual performance metrics and influencing factors, and the adopted simulation tools, such as OPNET, cannot achieve the dynamic link generation of IoV mesh networks. To address these problems, a network performance analysis model based on actual switches is proposed. First, a typical IoV mesh network architecture is constructed and abstracted into a mathematical model that describes how the link and topology changes over time. Then, the task generation model and the task forwarding model based on actual switches are proposed to obtain the real traffic distribution of the network. Finally, a scientific network performance indicator system is constructed. Simulation results demonstrate that, with rising task traffic and decreasing node caching capacity, the packet loss rate increases, and the task arrival rate decreases in the network. The proposed model can effectively evaluate the network performance across various traffic states and provide valuable insights for network construction and enhancement.

cs.NI↗

Combinatorial Optimization with Automated Graph Neural Networks

In recent years, graph neural networks (GNNs) have become increasingly popular for solving NP-hard combinatorial optimization (CO) problems, such as maximum cut and maximum independent set. The core idea behind these methods is to represent a CO problem as a graph and then use GNNs to learn the node/graph embedding with combinatorial information. Although these methods have achieved promising results, given a specific CO problem, the design of GNN architectures still requires heavy manual work with domain knowledge. Existing automated GNNs are mostly focused on traditional graph learning problems, which is inapplicable to solving NP-hard CO problems. To this end, we present a new class of \textbf{AUTO}mated \textbf{G}NNs for solving \textbf{NP}-hard problems, namely \textbf{AutoGNP}. We represent CO problems by GNNs and focus on two specific problems, i.e., mixed integer linear programming and quadratic unconstrained binary optimization. The idea of AutoGNP is to use graph neural architecture search algorithms to automatically find the best GNNs for a given NP-hard combinatorial optimization problem. Compared with existing graph neural architecture search algorithms, AutoGNP utilizes two-hop operators in the architecture search space. Moreover, AutoGNP utilizes simulated annealing and a strict early stopping policy to avoid local optimal solutions. Empirical results on benchmark combinatorial problems demonstrate the superiority of our proposed model.

cs.LG↗

Decision-focused Graph Neural Networks for Combinatorial Optimization

In recent years, there has been notable interest in investigating combinatorial optimization (CO) problems by neural-based framework. An emerging strategy to tackle these challenging problems involves the adoption of graph neural networks (GNNs) as an alternative to traditional algorithms, a subject that has attracted considerable attention. Despite the growing popularity of GNNs and traditional algorithm solvers in the realm of CO, there is limited research on their integrated use and the correlation between them within an end-to-end framework. The primary focus of our work is to formulate a more efficient and precise framework for CO by employing decision-focused learning on graphs. Additionally, we introduce a decision-focused framework that utilizes GNNs to address CO problems with auxiliary support. To realize an end-to-end approach, we have designed two cascaded modules: (a) an unsupervised trained graph predictive model, and (b) a solver for quadratic binary unconstrained optimization. Empirical evaluations are conducted on various classical tasks, including maximum cut, maximum independent set, and minimum vertex cover. The experimental results on classical CO problems (i.e. MaxCut, MIS, and MVC) demonstrate the superiority of our method over both the standalone GNN approach and classical methods.

cs.LG↗

Gravitational Radiation from Eccentric Binary Black Hole System in Dynamical Chern-Simons Gravity

Dynamical Chern-Simons (DCS) gravity, a typical parity-violating gravitational theory, modifies both the generation and propagation of gravitational waves from general relativity (GR). In this work, we derive the gravitational waveform radiated from a binary black hole system with eccentric orbits under the spin-aligned assumption in the DCS theory. Compared with GR, DCS modification enters the second-order post-Newtonian (2PN) approximation, affecting the spin-spin coupling and monopole-quadrupole coupling of binary motion. This modification produces an extra precession rate of periastron. This effect modulates the scalar and gravitational waveform through a quite low frequency. Additionally, the dissipation of conserved quantities results in the secular evolution of the semimajor axis and the eccentricity of binary orbits. Finally, the frequency-domain waveform is given in the post-circular scheme, requiring the initial eccentricity to be $\lesssim0.3$. This ready-to-use template will benefit the signal searches and improve the future constraint on DCS theory.

gr-qc↗

FeAmGen.jl: A Julia Program for Feynman Amplitude Generation

FeAmGen.jl is a Julia package designed to generate Feynman diagrams and their corresponding amplitudes for various processes in particle physics. Utilizing the models in the Universal Feynman Output (UFO) format and Qgraf for diagram generation, it also employs SymEngine.jl and Form for amplitude generation. Additionally, the package offers functions for constructing Feynman integral topologies. In conclusion, FeAmGen.jl provides usability and versatility for the high precision calculations of the perturbative quantum field theory in the Standard Model or in the extensions beyond it. The corresponding codes are available at https://code.ihep.ac.cn/IHEP-Multiloop/FeAmGen.jl.git.

hep-ph↗

Collaborate to Adapt: Source-Free Graph Domain Adaptation via Bi-directional Adaptation

Unsupervised Graph Domain Adaptation (UGDA) has emerged as a practical solution to transfer knowledge from a label-rich source graph to a completely unlabelled target graph. However, most methods require a labelled source graph to provide supervision signals, which might not be accessible in the real-world settings due to regulations and privacy concerns. In this paper, we explore the scenario of source-free unsupervised graph domain adaptation, which tries to address the domain adaptation problem without accessing the labelled source graph. Specifically, we present a novel paradigm called GraphCTA, which performs model adaptation and graph adaptation collaboratively through a series of procedures: (1) conduct model adaptation based on node's neighborhood predictions in target graph considering both local and global information; (2) perform graph adaptation by updating graph structure and node attributes via neighborhood contrastive learning; and (3) the updated graph serves as an input to facilitate the subsequent iteration of model adaptation, thereby establishing a collaborative loop between model adaptation and graph adaptation. Comprehensive experiments are conducted on various public datasets. The experimental results demonstrate that our proposed model outperforms recent source-free baselines by large margins.

cs.LG↗

Give Us the Facts: Enhancing Large Language Models with Knowledge Graphs for Fact-aware Language Modeling

Recently, ChatGPT, a representative large language model (LLM), has gained considerable attention due to its powerful emergent abilities. Some researchers suggest that LLMs could potentially replace structured knowledge bases like knowledge graphs (KGs) and function as parameterized knowledge bases. However, while LLMs are proficient at learning probabilistic language patterns based on large corpus and engaging in conversations with humans, they, like previous smaller pre-trained language models (PLMs), still have difficulty in recalling facts while generating knowledge-grounded contents. To overcome these limitations, researchers have proposed enhancing data-driven PLMs with knowledge-based KGs to incorporate explicit factual knowledge into PLMs, thus improving their performance to generate texts requiring factual knowledge and providing more informed responses to user queries. This paper reviews the studies on enhancing PLMs with KGs, detailing existing knowledge graph enhanced pre-trained language models (KGPLMs) as well as their applications. Inspired by existing studies on KGPLM, this paper proposes to enhance LLMs with KGs by developing knowledge graph-enhanced large language models (KGLLMs). KGLLM provides a solution to enhance LLMs' factual reasoning ability, opening up new avenues for LLM research.

cs.CL↗

Exploring $f(T)$ Gravity via strongly lensed fast radio bursts

This study aims to investigate the strong gravitational lensing effects in $f(T)$ gravity. We present the theoretical analytic expressions for the lensing effects in $f(T)$ gravity, including deflection angle, magnification, and time delay. On this basis, we also take the plasma lensing effect into consideration. We compare the lensing effects between the General Relativity in a vacuum environment and the $f(T)$ gravity in a plasma environment. From a strongly lensed fast radio burst, the results indicate that in a plasma environment, General Relativity and $f(T)$ gravity can generate indistinguishable image positions, but the magnification and time delay on these positions are significantly different, which can be distinguished by current facilities in principle. Therefore, the discrepancies between observational results and theoretical expectations can serve as clues for a modified gravity theory and provide constraints on $f(T)$ gravity.

gr-qc↗

CPDG: A Contrastive Pre-Training Method for Dynamic Graph Neural Networks

Dynamic graph data mining has gained popularity in recent years due to the rich information contained in dynamic graphs and their widespread use in the real world. Despite the advances in dynamic graph neural networks (DGNNs), the rich information and diverse downstream tasks have posed significant difficulties for the practical application of DGNNs in industrial scenarios. To this end, in this paper, we propose to address them by pre-training and present the Contrastive Pre-Training Method for Dynamic Graph Neural Networks (CPDG). CPDG tackles the challenges of pre-training for DGNNs, including generalization capability and long-short term modeling capability, through a flexible structural-temporal subgraph sampler along with structural-temporal contrastive pre-training schemes. Extensive experiments conducted on both large-scale research and industrial dynamic graph datasets show that CPDG outperforms existing methods in dynamic graph pre-training for various downstream tasks under three transfer settings.

cs.LG↗

Reinforcement Neighborhood Selection for Unsupervised Graph Anomaly Detection

Unsupervised graph anomaly detection is crucial for various practical applications as it aims to identify anomalies in a graph that exhibit rare patterns deviating significantly from the majority of nodes. Recent advancements have utilized Graph Neural Networks (GNNs) to learn high-quality node representations for anomaly detection by aggregating information from neighborhoods. However, the presence of anomalies may render the observed neighborhood unreliable and result in misleading information aggregation for node representation learning. Selecting the proper neighborhood is critical for graph anomaly detection but also challenging due to the absence of anomaly-oriented guidance and the interdependence with representation learning. To address these issues, we utilize the advantages of reinforcement learning in adaptively learning in complex environments and propose a novel method that incorporates Reinforcement neighborhood selection for unsupervised graph ANomaly Detection (RAND). RAND begins by enriching the candidate neighbor pool of the given central node with multiple types of indirect neighbors. Next, RAND designs a tailored reinforcement anomaly evaluation module to assess the reliability and reward of considering the given neighbor. Finally, RAND selects the most reliable subset of neighbors based on these rewards and introduces an anomaly-aware aggregator to amplify messages from reliable neighbors while diminishing messages from unreliable ones. Extensive experiments on both three synthetic and two real-world datasets demonstrate that RAND outperforms the state-of-the-art methods.

cs.LG↗

An empirical study of next-basket recommendations

Next Basket Recommender Systems (NBRs) function to recommend the subsequent shopping baskets for users through the modeling of their preferences derived from purchase history, typically manifested as a sequence of historical baskets. Given their widespread applicability in the E-commerce industry, investigations into NBRs have garnered increased attention in recent years. Despite the proliferation of diverse NBR methodologies, a substantial challenge lies in the absence of a systematic and unified evaluation framework across these methodologies. Various studies frequently appraise NBR approaches using disparate datasets and diverse experimental settings, impeding a fair and effective comparative assessment of methodological performance. To bridge this gap, this study undertakes a systematic empirical inquiry into NBRs, reviewing seminal works within the domain and scrutinizing their respective merits and drawbacks. Subsequently, we implement designated NBR algorithms on uniform datasets, employing consistent experimental configurations, and assess their performances via identical metrics. This methodological rigor establishes a cohesive framework for the impartial evaluation of diverse NBR approaches. It is anticipated that this study will furnish a robust foundation and serve as a pivotal reference for forthcoming research endeavors in this dynamic field.

cs.IR↗

A Systematical Evaluation for Next-Basket Recommendation Algorithms

Next basket recommender systems (NBRs) aim to recommend a user's next (shopping) basket of items via modeling the user's preferences towards items based on the user's purchase history, usually a sequence of historical baskets. Due to its wide applicability in the real-world E-commerce industry, the studies NBR have attracted increasing attention in recent years. NBRs have been widely studied and much progress has been achieved in this area with a variety of NBR approaches having been proposed. However, an important issue is that there is a lack of a systematic and unified evaluation over the various NBR approaches. Different studies often evaluate NBR approaches on different datasets, under different experimental settings, making it hard to fairly and effectively compare the performance of different NBR approaches. To bridge this gap, in this work, we conduct a systematical empirical study in NBR area. Specifically, we review the representative work in NBR and analyze their cons and pros. Then, we run the selected NBR algorithms on the same datasets, under the same experimental setting and evaluate their performances using the same measurements. This provides a unified framework to fairly compare different NBR approaches. We hope this study can provide a valuable reference for the future research in this vibrant area.

cs.IR↗

Constraints on the ghost-free parity-violating gravity from Laser-ranged Satellites

This paper explores the evolutionary behavior of the Earth-satellite binary system within the framework of the ghost-free parity-violating gravity and the corresponding discussion on the parity-violating effect from the laser-ranged satellites. For this purpose, we start our study with the Parameterized Post-Newtonian (PPN) metric of this gravity theory to study the orbital evolution of the satellites in which the spatial-time sector of the spacetime is modified due to the parity violation. With this modified PPN metric, we calculate the effects of the parity-violating sector of metrics on the time evolution of the orbital elements for an Earth-satellite binary system. We find that among the five orbital elements, the parity violation has no effect on the semi-latus rectum, while the eccentricity and ascending node are affected only in a periodic manner. These three orbital elements are the same as the results of general relativity and are also consistent with the observations of the present experiment. In particular, parity violation produces non-zero corrections to the eccentricity and pericenter, which will accumulate with the evolution of time, indicating that the parity violation of gravity produces observable secular effects. The observational constraint on the parity-violating effect is derived by confronting the theoretical prediction with the observation by the LAGEOS II pericenter advance, giving a constraint on the parity-violating parameter space from the satellite experiments.

gr-qc↗