arXiv subjects

Zhaoshan Liu

Publications and source records attributed to Zhaoshan Liu.

5 recordsLinked to original sources

arXiv2026

UNGT: Ultrasound Nasogastric Tube Dataset for Medical Image Analysis

We develop a novel ultrasound nasogastric tube (UNGT) dataset to address the lack of public nasogastric tube datasets. The UNGT dataset includes 493 images gathered from 110 patients with an average image resolution of approximately 879 $\times$ 583. Four structures, encompassing the liver, stomach, tube, and pancreas, are precisely annotated. Besides, we propose a semi-supervised adaptive-weighting aggregation medical segmenter to address data limitation and imbalance concurrently. The introduced adaptive weighting approach tackles the severe unbalanced challenge by regulating the loss across varying categories as training proceeds. The presented multiscale attention aggregation block bolsters the feature representation by integrating local and global contextual information. With these, the proposed AAMS can emphasize sparse or small structures and feature enhanced representation ability. We perform extensive segmentation experiments on our UNGT dataset, and the results show that AAMS outperforms existing state-of-the-art approaches to varying extents. In addition, we conduct comprehensive classification experiments across varying state-of-the-art methods and compare their performance. The dataset and code will be available upon publication at https://github.com/NUS-Tim/UNGT.

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arXiv2026

MedAugment: Universal Automatic Data Augmentation Plug-in for Medical Image Analysis

Data augmentation (DA) has been widely leveraged in computer vision to alleviate data shortage, while its application in medical imaging faces multiple challenges. The prevalent DA approaches in medical image analysis encompass conventional DA, synthetic DA, and automatic DA. However, these approaches may result in experience-driven design and intensive computation costs. Here, we propose a suitable yet general automatic DA method for medical images termed MedAugment. We propose pixel and spatial augmentation spaces and exclude the operations that can break medical details and features. Besides, we propose a sampling strategy by sampling a limited number of operations from the two spaces. Moreover, we present a hyperparameter mapping relationship to produce a rational augmentation level and make the MedAugment fully controllable using a single hyperparameter. These configurations settle the differences between natural and medical images. Extensive experimental results on four classification and four segmentation datasets demonstrate the superiority of MedAugment. Compared with existing approaches, the proposed MedAugment prevents producing color distortions or structural alterations while involving negligible computational overhead. Our method can serve as a plugin without an extra training stage, offering significant benefits to the community and medical experts lacking a deep learning foundation. The code is available at https://github.com/NUS-Tim/MedAugment.

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arXiv2024

CECT: Controllable Ensemble CNN and Transformer for COVID-19 Image Classification

The COVID-19 pandemic has resulted in hundreds of million cases and numerous deaths worldwide. Here, we develop a novel classification network CECT by controllable ensemble convolutional neural network and transformer to provide a timely and accurate COVID-19 diagnosis. The CECT is composed of a parallel convolutional encoder block, an aggregate transposed-convolutional decoder block, and a windowed attention classification block. Each block captures features at different scales from 28 $\times$ 28 to 224 $\times$ 224 from the input, composing enriched and comprehensive information. Different from existing methods, our CECT can capture features at both multi-local and global scales without any sophisticated module design. Moreover, the contribution of local features at different scales can be controlled with the proposed ensemble coefficients. We evaluate CECT on two public COVID-19 datasets and it reaches the highest accuracy of 98.1% in the intra-dataset evaluation, outperforming existing state-of-the-art methods. Moreover, the developed CECT achieves an accuracy of 90.9% on the unseen dataset in the inter-dataset evaluation, showing extraordinary generalization ability. With remarkable feature capture ability and generalization ability, we believe CECT can be extended to other medical scenarios as a powerful diagnosis tool. Code is available at https://github.com/NUS-Tim/CECT.

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arXiv2023

GSDA: Generative Adversarial Network-based Semi-Supervised Data Augmentation for Ultrasound Image Classification

Medical Ultrasound (US) is one of the most widely used imaging modalities in clinical practice, but its usage presents unique challenges such as variable imaging quality. Deep Learning (DL) models can serve as advanced medical US image analysis tools, but their performance is greatly limited by the scarcity of large datasets. To solve the common data shortage, we develop GSDA, a Generative Adversarial Network (GAN)-based semi-supervised data augmentation method. GSDA consists of the GAN and Convolutional Neural Network (CNN). The GAN synthesizes and pseudo-labels high-resolution, high-quality US images, and both real and synthesized images are then leveraged to train the CNN. To address the training challenges of both GAN and CNN with limited data, we employ transfer learning techniques during their training. We also introduce a novel evaluation standard that balances classification accuracy with computational time. We evaluate our method on the BUSI dataset and GSDA outperforms existing state-of-the-art methods. With the high-resolution and high-quality images synthesized, GSDA achieves a 97.9% accuracy using merely 780 images. Given these promising results, we believe that GSDA holds potential as an auxiliary tool for medical US analysis.

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arXiv2023

Recent Progress in Transformer-based Medical Image Analysis

The transformer is primarily used in the field of natural language processing. Recently, it has been adopted and shows promise in the computer vision (CV) field. Medical image analysis (MIA), as a critical branch of CV, also greatly benefits from this state-of-the-art technique. In this review, we first recap the core component of the transformer, the attention mechanism, and the detailed structures of the transformer. After that, we depict the recent progress of the transformer in the field of MIA. We organize the applications in a sequence of different tasks, including classification, segmentation, captioning, registration, detection, enhancement, localization, and synthesis. The mainstream classification and segmentation tasks are further divided into eleven medical image modalities. A large number of experiments studied in this review illustrate that the transformer-based method outperforms existing methods through comparisons with multiple evaluation metrics. Finally, we discuss the open challenges and future opportunities in this field. This task-modality review with the latest contents, detailed information, and comprehensive comparison may greatly benefit the broad MIA community.

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