arXiv subjects

Zhenglin Chen

Publications and source records attributed to Zhenglin Chen.

14 recordsLinked to original sources

arXiv2026

GCR: Geometry-Consistent Routing for Task-Agnostic Continual Anomaly Detection

Feature-based anomaly detection is widely adopted in industrial inspection due to the strong representational power of large pre-trained vision encoders. While most existing methods focus on improving within-category anomaly scoring, practical deployments increasingly require task-agnostic operation under continual category expansion, where the category identity is unknown at test time. In this setting, overall performance is often dominated by expert selection, namely routing an input to an appropriate normality model before any head-specific scoring is applied. However, routing rules that compare head-specific anomaly scores across independently constructed heads are unreliable in practice, as score distributions can differ substantially across categories in scale and tail behavior. We propose GCR, a lightweight mixture-of-experts framework for stabilizing task-agnostic continual anomaly detection through geometry-consistent routing. GCR routes each test image directly in a shared frozen patch-embedding space by minimizing an accumulated nearest-prototype distance to category-specific prototype banks, and then computes anomaly maps only within the routed expert using a standard prototype-based scoring rule. By separating cross-head decision making from within-head anomaly scoring, GCR avoids cross-head score comparability issues without requiring end-to-end representation learning. Experiments on MVTec AD and VisA show that geometry-consistent routing substantially improves routing stability and mitigates continual performance collapse, achieving near-zero forgetting while maintaining competitive detection and localization performance. These results indicate that many failures previously attributed to representation forgetting can instead be explained by decision-rule instability in cross-head routing. Code is available at https://github.com/jw-chae/GCR

cs.CV↗

arXiv2026

Memory-SAM: Human-Prompt-Free Tongue Segmentation via Retrieval-to-Prompt

Accurate tongue segmentation is crucial for reliable TCM analysis. Supervised models require large annotated datasets, while SAM-family models remain prompt-driven. We present Memory-SAM, a training-free, human-prompt-free pipeline that automatically generates effective prompts from a small memory of prior cases via dense DINOv3 features and FAISS retrieval. Given a query image, mask-constrained correspondences to the retrieved exemplar are distilled into foreground/background point prompts that guide SAM2 without manual clicks or model fine-tuning. We evaluate on 600 expert-annotated images (300 controlled, 300 in-the-wild). On the mixed test split, Memory-SAM achieves mIoU 0.9863, surpassing FCN (0.8188) and a detector-to-box SAM baseline (0.1839). On controlled data, ceiling effects above 0.98 make small differences less meaningful given annotation variability, while our method shows clear gains under real-world conditions. Results indicate that retrieval-to-prompt enables data-efficient, robust segmentation of irregular boundaries in tongue imaging. The code is publicly available at https://github.com/jw-chae/memory-sam.

cs.CV↗

arXiv2026

Mapping the maturation of TCM as an adjuvant to radiotherapy

The integration of complementary medicine into oncology represents a paradigm shift that has seen to increasing adoption of Traditional Chinese Medicine (TCM) as an adjuvant to radiotherapy. About twenty-five years since the formal institutionalization of integrated oncology, it is opportune to synthesize the trajectory of evidence for TCM as an adjuvant to radiotherapy. Here we conduct a large-scale analysis of 69,745 publications (2000 - 2025), emerging a cyclical evolution defined by coordinated expansion and contraction in publication output, international collaboration, and funding commitments that mirrors a define-ideate-test pattern. Using a theme modeling workflow designed to determine a stable thematic structure of the field, we identify five dominant thematic axes - cancer types, supportive care, clinical endpoints, mechanisms, and methodology - that signal a focus on patient well-being, scientific rigor and mechanistic exploration. Cross-theme integration of TCM is patient-centered and systems-oriented. Together with the emergent cycles of evolution, the thematic structure demonstrates progressive specialization and potential defragmentation of the field or saturation of existing research agenda. The analysis points to a field that has matured its current research agenda and is likely at the cusp of something new. Additionally, the field exhibits positive reporting of findings that is homogeneous across publication types, thematic areas, and the cycles of evolution suggesting a system-wide positive reporting bias agnostic to structural drivers.

cs.CL↗

arXiv2026

StructCore: Structure-Aware Image-Level Scoring for Training-Free Unsupervised Anomaly Detection

Max pooling is the de facto standard for converting anomaly score maps into image-level decisions in memory-bank-based unsupervised anomaly detection (UAD). However, because it relies on a single extreme response, it discards most information about how anomaly evidence is distributed and structured across the image, often causing normal and anomalous scores to overlap. We propose StructCore, a training-free, structure-aware image-level scoring method that goes beyond max pooling. Given an anomaly score map, StructCore computes a low-dimensional structural descriptor phi(S) that captures distributional and spatial characteristics, and refines image-level scoring via a diagonal Mahalanobis calibration estimated from train-good samples, without modifying pixel-level localization. StructCore achieves image-level AUROC scores of 99.6% on MVTec AD and 98.4% on VisA, demonstrating robust image-level anomaly detection by exploiting structural signatures missed by max pooling.

cs.CV↗

arXiv2025

pLDDT-Predictor: High-speed Protein Screening Using Transformer and ESM2

Recent advancements in protein structure prediction, particularly AlphaFold2, have revolutionized structural biology by achieving near-experimental accuracy ($\text{average RMSD} < 1.5\textÅ$). However, the computational demands of these models (approximately 30 minutes per protein on an RTX 4090) significantly limit their application in high-throughput protein screening. While large language models like ESM (Evolutionary Scale Modeling) have shown promise in extracting structural information directly from protein sequences, rapid assessment of protein structure quality for large-scale analyses remains a major challenge. We introduce pLDDT-Predictor, a high-speed protein screening tool that achieves a $250,000\times$ speedup compared to AlphaFold2 by leveraging pre-trained ESM2 protein embeddings and a Transformer architecture. Our model predicts AlphaFold2's pLDDT (predicted Local Distance Difference Test) scores with a Pearson correlation of 0.7891 and processes proteins in just 0.007 seconds on average. Using a comprehensive dataset of 1.5 million diverse protein sequences (ranging from 50 to 2048 amino acids), we demonstrate that pLDDT-Predictor accurately classifies high-confidence structures (pLDDT $>$ 70) with 91.2\% accuracy and achieves an MSE of 84.8142 compared to AlphaFold2's predictions. The source code and pre-trained models are freely available at https://github.com/jw-chae/pLDDT_Predictor, enabling the research community to perform rapid, large-scale protein structure quality assessments.

q-bio.BM↗

arXiv2025

HCMA-UNet: A Hybrid CNN-Mamba UNet with Axial Self-Attention for Efficient Breast Cancer Segmentation

Breast cancer lesion segmentation in DCE-MRI remains challenging due to heterogeneous tumor morphology and indistinct boundaries. To address these challenges, this study proposes a novel hybrid segmentation network, HCMA-UNet, for lesion segmentation of breast cancer. Our network consists of a lightweight CNN backbone and a Multi-view Axial Self-Attention Mamba (MISM) module. The MISM module integrates Visual State Space Block (VSSB) and Axial Self-Attention (ASA) mechanism, effectively reducing parameters through Asymmetric Split Channel (ASC) strategy to achieve efficient tri-directional feature extraction. Our lightweight model achieves superior performance with 2.87M parameters and 126.44 GFLOPs. A Feature-guided Region-aware loss function (FRLoss) is proposed to enhance segmentation accuracy. Extensive experiments on one private and two public DCE-MRI breast cancer datasets demonstrate that our approach achieves state-of-the-art performance while maintaining computational efficiency. FRLoss also exhibits good cross-architecture generalization capabilities. The source code is available at https://github.com/Haoxuanli-Thu/HCMA-UNet.

eess.IV↗

arXiv2024

Practical Guidelines for Cell Segmentation Models Under Optical Aberrations in Microscopy

Cell segmentation is essential in biomedical research for analyzing cellular morphology and behavior. Deep learning methods, particularly convolutional neural networks (CNNs), have revolutionized cell segmentation by extracting intricate features from images. However, the robustness of these methods under microscope optical aberrations remains a critical challenge. This study evaluates cell image segmentation models under optical aberrations from fluorescence and bright field microscopy. By simulating different types of aberrations, including astigmatism, coma, spherical aberration, trefoil, and mixed aberrations, we conduct a thorough evaluation of various cell instance segmentation models using the DynamicNuclearNet (DNN) and LIVECell datasets, representing fluorescence and bright field microscopy cell datasets, respectively. We train and test several segmentation models, including the Otsu threshold method and Mask R-CNN with different network heads (FPN, C3) and backbones (ResNet, VGG, Swin Transformer), under aberrated conditions. Additionally, we provide usage recommendations for the Cellpose 2.0 Toolbox on complex cell degradation images. The results indicate that the combination of FPN and SwinS demonstrates superior robustness in handling simple cell images affected by minor aberrations. In contrast, Cellpose 2.0 proves effective for complex cell images under similar conditions. Furthermore, we innovatively propose the Point Spread Function Image Label Classification Model (PLCM). This model can quickly and accurately identify aberration types and amplitudes from PSF images, assisting researchers without optical training. Through PLCM, researchers can better apply our proposed cell segmentation guidelines.

eess.IV↗

arXiv2024

Harnessing Intra-group Variations Via a Population-Level Context for Pathology Detection

Realizing sufficient separability between the distributions of healthy and pathological samples is a critical obstacle for pathology detection convolutional models. Moreover, these models exhibit a bias for contrast-based images, with diminished performance on texture-based medical images. This study introduces the notion of a population-level context for pathology detection and employs a graph theoretic approach to model and incorporate it into the latent code of an autoencoder via a refinement module we term PopuSense. PopuSense seeks to capture additional intra-group variations inherent in biomedical data that a local or global context of the convolutional model might miss or smooth out. Proof-of-concept experiments on contrast-based and texture-based images, with minimal adaptation, encounter the existing preference for intensity-based input. Nevertheless, PopuSense demonstrates improved separability in contrast-based images, presenting an additional avenue for refining representations learned by a model.

eess.IV↗

arXiv2024

Deep learning enables automated assessments of inflammatory response in zebrafish exposed to different pollutants

In the field of environmental toxicology, rapid and precise assessment of the inflammatory response to pollutants in biological models is critical. This study leverages the power of deep learning to enable automated assessments of zebrafish, a model organism widely used for its translational relevance to human disease pathways. We present an innovative approach to assessing inflammatory responses in zebrafish exposed to various pollutants through an end-to-end deep learning model. The model employs a Unet-based architecture to automatically process high-throughput lateral zebrafish images, segmenting specific regions and quantifying neutrophils as inflammation markers. Alongside imaging, qPCR analysis offers gene expression insights, revealing the molecular impact of exposure on inflammatory pathways. Moreover, the deep learning model was packaged as a user-friendly executable file (.exe), facilitating widespread application by enabling use on virtually any computer without the need for specialized software or training.

physics.bio-ph↗

arXiv2024

Application and prospect of hydrogels in diabetic wound treatment

Diabetic foot patients face persistent, challenging wounds, prompting a quest for innovative therapies. Hydrogel, a promising modality, is increasingly recognized for its potential in diabetic wound care. This review examines hydrogel's emergence as a therapeutic option, and its benefits, and outlines research directions. Diabetic foot ulcers, notoriously hard to heal, demand effective solutions beyond traditional methods. Hydrogel, with its hydrophilic nature and biocompatibility, offers a novel approach. It fosters a moist wound environment, aids healing, and mitigates infection risks. Additionally, its versatility in delivering bioactive agents enhances wound recovery. This analysis provides insights into hydrogel's application, paving the way for improved outcomes and patient well-being in diabetic foot care.

physics.med-ph↗

arXiv2024

Pneumonia App: a mobile application for efficient pediatric pneumonia diagnosis using explainable convolutional neural networks (CNN)

Mycoplasma pneumoniae pneumonia (MPP) poses significant diagnostic challenges in pediatric healthcare, especially in regions like China where it's prevalent. We introduce PneumoniaAPP, a mobile application leveraging deep learning techniques for rapid MPP detection. Our approach capitalizes on convolutional neural networks (CNNs) trained on a comprehensive dataset comprising 3345 chest X-ray (CXR) images, which includes 833 CXR images revealing MPP and additionally augmented with samples from a public dataset. The CNN model achieved an accuracy of 88.20% and an AUROC of 0.9218 across all classes, with a specific accuracy of 97.64% for the mycoplasma class, as demonstrated on the testing dataset. Furthermore, we integrated explainability techniques into PneumoniaAPP to aid respiratory physicians in lung opacity localization. Our contribution extends beyond existing research by targeting pediatric MPP, emphasizing the age group of 0-12 years, and prioritizing deployment on mobile devices. This work signifies a significant advancement in pediatric pneumonia diagnosis, offering a reliable and accessible tool to alleviate diagnostic burdens in healthcare settings.

eess.IV↗

arXiv2023

Light sheet and light field microscopy based on scanning Bessel beam illumination

We developed a Bessel light sheet fluorescence microscopy (LSFM) system to enable high-speed, wide-field intra-vital imaging of zebrafish and other thick biological samples. This system uses air objectives for the convenient mounting of large samples and incorporates an electrically tunable lens for automatic focusing during volumetric imaging. To enhance the precision of 3D imaging, the impact of the electrically tunable lens on system magnification is investigated and modified through designed experiments. Despite using Bessel beams with side lobes, we achieved satisfactory image quality through a straightforward background noise subtraction method, eliminating the need for further deconvolution. Our system provides zebrafish imaging at a resolution comparable to commercial confocal microscopy but in just 1/40th of the time. We also introduced light field microscopy (LFM) to improve 3D in vivo imaging temporal resolution. Apart from the 28-fold speed enhancement, the comparison of LFM and LSFM results reveals a unique aspect of LFM imaging concerning image dynamic range, which has not been previously reported.

physics.optics↗

arXiv2023

Chinese herb medicine in augmented reality

Augmented reality becomes popular in education gradually, which provides a contextual and adaptive learning experience. Here, we develop a Chinese herb medicine AR platform based the 3dsMax and the Unity that allows users to visualize and interact with the herb model and learn the related information. The users use their mobile camera to scan the 2D herb picture to trigger the presentation of 3D AR model and corresponding text information on the screen in real-time. The system shows good performance and has high accuracy for the identification of herbal medicine after interference test and occlusion test. Users can interact with the herb AR model by rotating, scaling, and viewing transformation, which effectively enhances learners' interest in Chinese herb medicine.

cs.HC↗

arXiv2023

Biocompatible wearable touch panel based on ionically conductive organic hydrogels with anti-freezing, anti-dehydration, self-healing, and underwater adhesion properties

Next-generation touch panels are poised to benefit from the use of stretchable and transparent soft ionic conductors, but these materials face several challenges in practical application, including structural damage, loss of functionality, and device stratification, particularly in extreme environments. To address these challenges, in this work, a biocompatible, transparent, self-adhesive gelatin-PAA-based organic hydrogel (PC-OH) was developed, the gel can adhere to the skin in both air and underwater conditions and also anti-freezing, anti-drying, fast self-healable (with a self-healing time of less than 4s in air and underwater), long-term stable for up to 7 days at a wide range of temperatures, highly stretchable, and conductive over a wide temperature range. Using this organic hydrogel, an organic hydrogel-based surface capacitive touch system has been developed that can detect finger touch position in wet environments and over a wide temperature range, demonstrating its ability to sense finger touch position. The wearable touch panel has been successfully demonstrated through the ability to write text, draw figures, and play electronic games, showcasing its potential use in various applications. This breakthrough has significant implications for the development of next-generation touch panels, particularly in the healthcare, sports, and entertainment industries, where reliable and versatile human-machine interfaces are essential.

cond-mat.soft↗