arXiv subjects

Zhengming Chen

Publications and source records attributed to Zhengming Chen.

12 recordsLinked to original sources

arXiv2026

Learning Human Health and Diseases from 24-hour Wrist Movement

Much of human health and function unfolds beyond the clinic, through the movements of everyday life. Wrist-worn accelerometers capture these movements continuously, yet their rich signals are often reduced to a small set of predefined behavioural summary measures. Here, we present Sensori, a self-supervised foundation model that learns general-purpose health representations directly from 24 hours of raw tri-axial wrist movement. We developed and evaluated the model across four population-based cohorts from the United Kingdom, China and the United States, comprising 122,640 participants contributing 683,617 person-days of free-living recordings. Sensori condensed each day of movement into a representation that captured diverse movement behaviours, demographic characteristics, health axes and physical function. Evaluation in independent cohorts showed that these representations generalised across populations and measurement settings without retraining. When added to common clinical covariates, Sensori significantly improved prevalent disease classification for 52 of 102 eligible conditions (median delta AUROC, 0.060; range, 0.012-0.242) and incident disease risk prediction for 26 of 87 eligible conditions (median delta Uno's C-index, 0.064; range, 0.025-0.172), with the largest gains for neurological and psychiatric disorders. These findings establish 24-hour wrist movement as a rich and scalable source of health information, with the potential to support passive health monitoring and disease prediction at population scale.

cs.LG↗

arXiv2026

CDFM: Towards a General-Purpose Causal Discovery Foundation Model

Causal discovery, the process of recovering underlying causal structures from observational data, is a fundamental pursuit across scientific disciplines. Over the past decades, numerous algorithms have been developed to tackle this challenge through workflows tailored to the specific causal mechanisms underlying each type of dataset, demonstrating effectiveness across a wide range of applications. However, as the volume and heterogeneity of real-world data continue to grow, this dataset-specific approach inevitably leads to a fragmented, test-driven paradigm that struggles to scale to the demands of modern scientific discovery. To address this, we formulate the Causal Discovery Foundation Model (CDFM) as a unified, general-purpose framework for zero-shot structural inference. To ensure reliable generalization across unknown domains, we first investigate the theoretical boundaries of causal identifiability, revealing the indispensable role of causal prior mechanisms in this process. Building on these insights, we formulate a principled variational framework that treats unknown causal mechanisms as latent variables and mathematically decomposes the intractable marginal likelihood into distinct, tractable learning modules. The variational decomposition provides a conceptual design principle for the architecture design of CDFM, while comprehensive causal knowledge guides the large-scale synthesis of our pretraining data. By pretraining on a massive, highly diverse space of synthetic structural causal models, CDFM successfully internalizes complex statistical asymmetries. Extensive experiments demonstrate that CDFM consistently outperforms traditional algorithms, driving a paradigm shift toward a general-purpose causal discovery foundation model.

cs.LG↗

arXiv2026

Efficient Traffic State Prediction With Dynamic Joint Spatio-Temporal Relation Inference

Traffic prediction is difficult due to the complex interplay of temporal evolution, spatial interactions, and delayed spatio-temporal propagation over road networks. Existing methods either model spatial and temporal dependencies separately or employ unified spatio-temporal structures, but they often insufficiently characterize how neighboring sensors at historical timestamps influence a target node, while complex joint models may incur high computation. This paper proposes STEI-PCN, an efficient pure convolutional network based on spatio-temporal encoding and relation inference. It first builds a local causal joint spatio-temporal graph to restrict candidate interactions, then uses absolute position and relative distance encodings to infer dynamic edge weights. A single-layer graph convolution with a position-aware gated activation unit captures local joint dependencies, and temporal dilated causal convolutions complement long-range temporal patterns. A multi-view prediction module fuses raw, local propagation, and long-range temporal representations for direct multi-step forecasting. Experiments on PeMS03, PeMS04, PeMS07, PeMS08, and PeMS-Bay under multiple horizons show that STEI-PCN achieves competitive accuracy with moderate parameters and low training and inference costs. Ablation and fluctuation analyses further verify the contributions of the main components and empirically analyze the effects of the training-stage constraints under sharp speed changes. Our code is available at a GitHub link https://github.com/Jessez2/STEI-PCN.

cs.CV↗

arXiv2025

RadGS-Reg: Registering Spine CT with Biplanar X-rays via Joint 3D Radiative Gaussians Reconstruction and 3D/3D Registration

Computed Tomography (CT)/X-ray registration in image-guided navigation remains challenging because of its stringent requirements for high accuracy and real-time performance. Traditional "render and compare" methods, relying on iterative projection and comparison, suffer from spatial information loss and domain gap. 3D reconstruction from biplanar X-rays supplements spatial and shape information for 2D/3D registration, but current methods are limited by dense-view requirements and struggles with noisy X-rays. To address these limitations, we introduce RadGS-Reg, a novel framework for vertebral-level CT/X-ray registration through joint 3D Radiative Gaussians (RadGS) reconstruction and 3D/3D registration. Specifically, our biplanar X-rays vertebral RadGS reconstruction module explores learning-based RadGS reconstruction method with a Counterfactual Attention Learning (CAL) mechanism, focusing on vertebral regions in noisy X-rays. Additionally, a patient-specific pre-training strategy progressively adapts the RadGS-Reg from simulated to real data while simultaneously learning vertebral shape prior knowledge. Experiments on in-house datasets demonstrate the state-of-the-art performance for both tasks, surpassing existing methods. The code is available at: https://github.com/shenao1995/RadGS_Reg.

cs.CV↗

arXiv2025

HateDebias: On the Diversity and Variability of Hate Speech Debiasing

Hate speech frequently appears on social media platforms and urgently needs to be effectively controlled. Alleviating the bias caused by hate speech can help resolve various ethical issues. Although existing research has constructed several datasets for hate speech detection, these datasets seldom consider the diversity and variability of bias, making them far from real-world scenarios. To fill this gap, we propose a benchmark HateDebias to analyze the fairness of models under dynamically evolving environments. Specifically, to meet the diversity of biases, we collect hate speech data with different types of biases from real-world scenarios. To further simulate the variability in the real-world scenarios(i.e., the changing of bias attributes in datasets), we construct a dataset to follow the continuous learning setting and evaluate the detection accuracy of models on the HateDebias, where performance degradation indicates a significant bias toward a specific attribute. To provide a potential direction, we further propose a continual debiasing framework tailored to dynamic bias in real-world scenarios, integrating memory replay and bias information regularization to ensure the fairness of the model. Experiment results on the HateDebias benchmark reveal that our methods achieve improved performance in mitigating dynamic biases in real-world scenarios, highlighting the practicality in real-world applications.

cs.CL↗

arXiv2025

Causal View of Time Series Imputation: Some Identification Results on Missing Mechanism

Time series imputation is one of the most challenge problems and has broad applications in various fields like health care and the Internet of Things. Existing methods mainly aim to model the temporally latent dependencies and the generation process from the observed time series data. In real-world scenarios, different types of missing mechanisms, like MAR (Missing At Random), and MNAR (Missing Not At Random) can occur in time series data. However, existing methods often overlook the difference among the aforementioned missing mechanisms and use a single model for time series imputation, which can easily lead to misleading results due to mechanism mismatching. In this paper, we propose a framework for time series imputation problem by exploring Different Missing Mechanisms (DMM in short) and tailoring solutions accordingly. Specifically, we first analyze the data generation processes with temporal latent states and missing cause variables for different mechanisms. Sequentially, we model these generation processes via variational inference and estimate prior distributions of latent variables via normalizing flow-based neural architecture. Furthermore, we establish identifiability results under the nonlinear independent component analysis framework to show that latent variables are identifiable. Experimental results show that our method surpasses existing time series imputation techniques across various datasets with different missing mechanisms, demonstrating its effectiveness in real-world applications.

cs.LG↗

arXiv2025

Nonstationary Time Series Forecasting via Unknown Distribution Adaptation

As environments evolve, temporal distribution shifts can degrade time series forecasting performance. A straightforward solution is to adapt to nonstationary changes while preserving stationary dependencies. Hence, some methods disentangle stationary and nonstationary components by assuming uniform distribution shifts, but it is impractical since when the distribution changes is unknown. To address this challenge, we propose the \textbf{U}nknown \textbf{D}istribution \textbf{A}daptation (\textbf{UDA}) model for nonstationary time series forecasting, which detects when distribution shifts occur and disentangles stationary/nonstationary latent variables, thus enabling adaptation to unknown distribution without assuming a uniform distribution shift. Specifically, under a Hidden Markov assumption of latent environments, we demonstrate that the latent environments are identifiable. Sequentially, we further disentangle stationary/nonstationary latent variables by leveraging the variability of historical information. Based on these theoretical results, we propose a variational autoencoder-based model, which incorporates an autoregressive hidden Markov model to estimate latent environments. Additionally, we further devise the modular prior networks to disentangle stationary/nonstationary latent variables. These two modules realize automatic adaptation and enhance nonstationary forecasting performance. Experimental results on several datasets validate the effectiveness of our approach.

cs.LG↗

arXiv2024

Learning Discrete Latent Variable Structures with Tensor Rank Conditions

Unobserved discrete data are ubiquitous in many scientific disciplines, and how to learn the causal structure of these latent variables is crucial for uncovering data patterns. Most studies focus on the linear latent variable model or impose strict constraints on latent structures, which fail to address cases in discrete data involving non-linear relationships or complex latent structures. To achieve this, we explore a tensor rank condition on contingency tables for an observed variable set $\mathbf{X}_p$, showing that the rank is determined by the minimum support of a specific conditional set (not necessary in $\mathbf{X}_p$) that d-separates all variables in $\mathbf{X}_p$. By this, one can locate the latent variable through probing the rank on different observed variables set, and further identify the latent causal structure under some structure assumptions. We present the corresponding identification algorithm and conduct simulated experiments to verify the effectiveness of our method. In general, our results elegantly extend the identification boundary for causal discovery with discrete latent variables and expand the application scope of causal discovery with latent variables.

cs.LG↗

arXiv2024

Generalized Independent Noise Condition for Estimating Causal Structure with Latent Variables

We investigate the task of learning causal structure in the presence of latent variables, including locating latent variables and determining their quantity, and identifying causal relationships among both latent and observed variables. To this end, we propose a Generalized Independent Noise (GIN) condition for linear non-Gaussian acyclic causal models that incorporate latent variables, which establishes the independence between a linear combination of certain measured variables and some other measured variables. Specifically, for two observed random vectors $\bf{Y}$ and $\bf{Z}$, GIN holds if and only if $ω^{\intercal}\mathbf{Y}$ and $\mathbf{Z}$ are independent, where $ω$ is a non-zero parameter vector determined by the cross-covariance between $\mathbf{Y}$ and $\mathbf{Z}$. We then give necessary and sufficient graphical criteria of the GIN condition in linear non-Gaussian acyclic models. Roughly speaking, GIN implies the existence of a set $\mathcal{S}$ such that $\mathcal{S}$ is causally earlier (w.r.t. the causal ordering) than $\mathbf{Y}$, and that every active (collider-free) path between $\mathbf{Y}$ and $\mathbf{Z}$ must contain a node from $\mathcal{S}$. Interestingly, we find that the independent noise condition (i.e., if there is no confounder, causes are independent of the residual derived from regressing the effect on the causes) can be seen as a special case of GIN. With such a connection between GIN and latent causal structures, we further leverage the proposed GIN condition, together with a well-designed search procedure, to efficiently estimate Linear, Non-Gaussian Latent Hierarchical Models (LiNGLaHs), where latent confounders may also be causally related and may even follow a hierarchical structure. We show that the causal structure of a LiNGLaH is identifiable in light of GIN conditions. Experimental results show the effectiveness of the proposed method.

cs.LG↗

arXiv2024

Automating the Selection of Proxy Variables of Unmeasured Confounders

Recently, interest has grown in the use of proxy variables of unobserved confounding for inferring the causal effect in the presence of unmeasured confounders from observational data. One difficulty inhibiting the practical use is finding valid proxy variables of unobserved confounding to a target causal effect of interest. These proxy variables are typically justified by background knowledge. In this paper, we investigate the estimation of causal effects among multiple treatments and a single outcome, all of which are affected by unmeasured confounders, within a linear causal model, without prior knowledge of the validity of proxy variables. To be more specific, we first extend the existing proxy variable estimator, originally addressing a single unmeasured confounder, to accommodate scenarios where multiple unmeasured confounders exist between the treatments and the outcome. Subsequently, we present two different sets of precise identifiability conditions for selecting valid proxy variables of unmeasured confounders, based on the second-order statistics and higher-order statistics of the data, respectively. Moreover, we propose two data-driven methods for the selection of proxy variables and for the unbiased estimation of causal effects. Theoretical analysis demonstrates the correctness of our proposed algorithms. Experimental results on both synthetic and real-world data show the effectiveness of the proposed approach.

cs.LG↗

arXiv2024

Causal Discovery from Poisson Branching Structural Causal Model Using High-Order Cumulant with Path Analysis

Count data naturally arise in many fields, such as finance, neuroscience, and epidemiology, and discovering causal structure among count data is a crucial task in various scientific and industrial scenarios. One of the most common characteristics of count data is the inherent branching structure described by a binomial thinning operator and an independent Poisson distribution that captures both branching and noise. For instance, in a population count scenario, mortality and immigration contribute to the count, where survival follows a Bernoulli distribution, and immigration follows a Poisson distribution. However, causal discovery from such data is challenging due to the non-identifiability issue: a single causal pair is Markov equivalent, i.e., $X\rightarrow Y$ and $Y\rightarrow X$ are distributed equivalent. Fortunately, in this work, we found that the causal order from $X$ to its child $Y$ is identifiable if $X$ is a root vertex and has at least two directed paths to $Y$, or the ancestor of $X$ with the most directed path to $X$ has a directed path to $Y$ without passing $X$. Specifically, we propose a Poisson Branching Structure Causal Model (PB-SCM) and perform a path analysis on PB-SCM using high-order cumulants. Theoretical results establish the connection between the path and cumulant and demonstrate that the path information can be obtained from the cumulant. With the path information, causal order is identifiable under some graphical conditions. A practical algorithm for learning causal structure under PB-SCM is proposed and the experiments demonstrate and verify the effectiveness of the proposed method.

stat.ML↗

arXiv2023

Identification of Causal Structure in the Presence of Missing Data with Additive Noise Model

Missing data are an unavoidable complication frequently encountered in many causal discovery tasks. When a missing process depends on the missing values themselves (known as self-masking missingness), the recovery of the joint distribution becomes unattainable, and detecting the presence of such self-masking missingness remains a perplexing challenge. Consequently, due to the inability to reconstruct the original distribution and to discern the underlying missingness mechanism, simply applying existing causal discovery methods would lead to wrong conclusions. In this work, we found that the recent advances additive noise model has the potential for learning causal structure under the existence of the self-masking missingness. With this observation, we aim to investigate the identification problem of learning causal structure from missing data under an additive noise model with different missingness mechanisms, where the `no self-masking missingness' assumption can be eliminated appropriately. Specifically, we first elegantly extend the scope of identifiability of causal skeleton to the case with weak self-masking missingness (i.e., no other variable could be the cause of self-masking indicators except itself). We further provide the sufficient and necessary identification conditions of the causal direction under additive noise model and show that the causal structure can be identified up to an IN-equivalent pattern. We finally propose a practical algorithm based on the above theoretical results on learning the causal skeleton and causal direction. Extensive experiments on synthetic and real data demonstrate the efficiency and effectiveness of the proposed algorithms.

cs.LG↗