arXiv subjects

Zhenyu Bu

Publications and source records attributed to Zhenyu Bu.

9 recordsLinked to original sources

arXiv2026

Instance-Guided Report Anchoring for Text-Free 3D Abnormality Segmentation in Chest CT

Accurate 3D abnormality segmentation in chest CT requires dense spatial supervision, but obtaining expert voxel-level labels is costly. Radiology reports, however, are routinely generated during clinical interpretation and contain instance-specific descriptions that can provide additional guidance without new dense annotation. Existing vision-language grounding methods typically require report-derived findings at inference, making localization dependent on paired text and limiting each forward pass to a queried finding. We propose Instance-Guided Report Anchoring (IGRA), a model-agnostic module that preserves the correspondence between each annotated abnormality instance and the report finding that describes it. IGRA pools each instance representation and anchors it to the corresponding finding embedding during training; all text-related components are discarded at inference. We further reformulate free-text grounding on ReXGroundingCT as multi-label volumetric segmentation by merging same-category instances, allowing all abnormality categories to be predicted in one image-only forward pass. IGRA improves Dice by 22.5% over the strongest image-only baseline (30.93 vs. 25.25) and is comparable to VoxTell on the single-finding subset (30.29 vs. 30.43). Applied unchanged to four standard 3D segmentation backbones, IGRA improves Dice and hit rate across all architectures. Zero-shot evaluation on LIDC-IDRI, PleThora, and a private in-house dataset further shows consistent gains over image-only baselines.

cs.CV↗

arXiv2026

Automatic LV Localization and Short-Axis Plane Estimation from Arbitrary CMR Slice

Accurate estimation of left ventricular (LV) orientation is essential for cardiac magnetic resonance (CMR) imaging and downstream analysis. Existing methods typically formulate orientation recognition as discrete view classification or rely on multi-slice geometric intersection, limiting their ability to model continuous 3D orientation and generalize across arbitrary slices. This work introduces a novel paradigm: Joint LV localization and 3D orientation estimation from a single CMR slice. To investigate this setting, representative orientation-aware detection frameworks are adapted to the CMR domain, and their limitations are analyzed. Upon that, we propose the Polar-Coupled Circular (PCC) embedding that provides a continuous and unambiguous orientation representation to address the limitations. Meanwhile, a scalable benchmark is constructed through automatic slice sampling from volumetric CMR segmentation datasets. Extensive experiments on four datasets demonstrate strong performance, achieving an average mIoU of 86.18% and an average angle deviation of 3.39°. This study establishes a new task setting for single-slice LV orientation modeling and provides a geometry-consistent framework for spatially informed CMR analysis. Code is available at https://github.com/yuyi1005/cmr-3d-ood.

eess.IV↗

arXiv2026

REALM: Retrospective Encoder Alignment for LFP Modeling

Spike activity has been the dominant neural signal for behavior decoding due to its high spatial and temporal resolution. However, as brain-computer interfaces (BCIs) move toward high channel counts and wireless operation, the high sampling frequency of spike signals becomes a bottleneck due to high power and bandwidth requirements. Local field potentials (LFPs) represent a different spatial-temporal scale of brain activity compared to spikes, offering key advantages including improved long-term stability, reduced energy consumption, and lower bandwidth requirement. Despite these benefits, LFP-based decoding models typically show reduced accuracy and often rely on non-causal architectures that are unsuitable for real-time deployment. To address these challenges, we propose REALM: a retrospective distillation framework that enables causal LFP decoding. Inspired by offline-to-online distillation strategies in speech recognition, REALM transfers representational knowledge from a pretrained multi-session bidirectional LFP model to a causal version for real-time deployment. We first pretrain a bidirectional Mamba-2 teacher model using a masked autoencoding objective. We then distill this teacher model into a compact student model via a combined objective of representation alignment and task supervision. REALM consistently outperforms both causal and non-causal LFP-based SOTA methods for behavior decoding. Notably, our REALM improves decoding performance while achieving a $2\times$ reduction in parameter count and a $10\times$ reduction in training time. These results demonstrate that retrospective distillation effectively bridges the gap between offline and real-time neural decoding. REALM shows that LFP-only models can achieve competitive decoding performance without reliance on spike signals, offering a practical and scalable alternative for next-generation wireless implantable BCIs.

cs.LG↗

arXiv2026

Uncertainty-Aware Structured Data Extraction from Full CMR Reports via Distilled LLMs

Converting free-text cardiac magnetic resonance (CMR) reports into auditable structured data remains a bottleneck for cohort assembly, longitudinal curation, and clinical decision support. We present CMR-EXTR, a lightweight framework that converts free-text CMR reports into structured data and assigns per-field confidence for quality control. A teacher-student distillation pipeline enables fully offline inference while limiting manual annotation. Uncertainty integrates three complementary principles -- distribution plausibility, sampling stability, and cross-field consistency -- to triage human review. Experiments show that CMR-EXTR achieves 99.65% variable-level accuracy, demonstrating both reliable extraction and informative confidence scores. To our knowledge, this is the first CMR-specific extraction system with integrated confidence estimation. The code is available at https://github.com/yuyi1005/CMR-EXTR.

cs.CL↗

arXiv2026

Prior-guided Hierarchical Instance-pixel Contrastive Learning for Ultrasound Speckle Noise Suppression

Ultrasound denoising is essential for mitigating speckle-induced degradations, thereby enhancing image quality and improving diagnostic reliability. Nevertheless, because speckle patterns inherently encode both texture and fine anatomical details, effectively suppressing noise while preserving structural fidelity remains a significant challenge. In this study, we propose a prior-guided hierarchical instance-pixel contrastive learning model for ultrasound denoising, designed to promote noise-invariant and structure-aware feature representations by maximizing the separability between noisy and clean samples at both pixel and instance levels. Specifically, a statistics-guided pixel-level contrastive learning strategy is introduced to enhance distributional discrepancies between noisy and clean pixels, thereby improving local structural consistency. Concurrently, a memory bank is employed to facilitate instance-level contrastive learning in the feature space, encouraging representations that more faithfully approximate the underlying data distribution. Furthermore, a hybrid Transformer-CNN architecture is adopted, coupling a Transformer-based encoder for global context modeling with a CNN-based decoder optimized for fine-grained anatomical structure restoration, thus enabling complementary exploitation of long-range dependencies and local texture details. Extensive evaluations on two publicly available ultrasound datasets demonstrate that the proposed model consistently outperforms existing methods, confirming its effectiveness and superiority.

cs.CV↗

arXiv2025

A multi-dynamic low-rank deep image prior (ML-DIP) for 3D real-time cardiovascular MRI

Purpose: To develop a reconstruction framework for 3D real-time cine cardiovascular magnetic resonance (CMR) from highly undersampled data without requiring fully sampled training datasets. Methods: We developed a multi-dynamic low-rank deep image prior (ML-DIP) framework that models spatial image content and deformation fields using separate neural networks. These sub-networks are jointly trained per scan to reconstruct the dynamic image series directly from undersampled k-space data. ML-DIP was evaluated on (i) a 3D cine digital phantom with simulated premature ventricular contractions (PVCs), (ii) ten healthy subjects (including two scanned during both rest and exercise), and (iii) 12 patients with a history of PVCs. Phantom results were assessed using peak signal-to-noise ratio (PSNR) and structural similarity index measure (SSIM). In vivo performance was evaluated by comparing left-ventricular function quantification (against 2D real-time cine) and image quality (against 2D real-time cine and binning-based 5D-Cine). Results: In the phantom study, ML-DIP achieved PSNR > 29 dB and SSIM > 0.90 for scan times as short as two minutes, while recovering cardiac motion, respiratory motion, and PVC events. In healthy subjects, ML-DIP yielded functional measurements comparable to 2D cine and higher image quality than 5D-Cine, including during exercise with high heart rates and bulk motion. In PVC patients, ML-DIP preserved beat-to-beat variability and reconstructed irregular beats, whereas 5D-Cine showed motion artifacts and information loss due to binning. Conclusion: ML-DIP enables high-quality 3D real-time CMR with acceleration factors exceeding 1,000 by learning low-rank spatial and motion representations from undersampled data, without relying on external fully sampled training datasets.

eess.IV↗

arXiv2024

DDSB: An Unsupervised and Training-free Method for Phase Detection in Echocardiography

Accurate identification of End-Diastolic (ED) and End-Systolic (ES) frames is key for cardiac function assessment through echocardiography. However, traditional methods face several limitations: they require extensive amounts of data, extensive annotations by medical experts, significant training resources, and often lack robustness. Addressing these challenges, we proposed an unsupervised and training-free method, our novel approach leverages unsupervised segmentation to enhance fault tolerance against segmentation inaccuracies. By identifying anchor points and analyzing directional deformation, we effectively reduce dependence on the accuracy of initial segmentation images and enhance fault tolerance, all while improving robustness. Tested on Echo-dynamic and CAMUS datasets, our method achieves comparable accuracy to learning-based models without their associated drawbacks. The code is available at https://github.com/MRUIL/DDSB

cs.CV↗

arXiv2023

CANet: Channel Extending and Axial Attention Catching Network for Multi-structure Kidney Segmentation

Renal cancer is one of the most prevalent cancers worldwide. Clinical signs of kidney cancer include hematuria and low back discomfort, which are quite distressing to the patient. Some surgery-based renal cancer treatments like laparoscopic partial nephrectomy relys on the 3D kidney parsing on computed tomography angiography (CTA) images. Many automatic segmentation techniques have been put forward to make multi-structure segmentation of the kidneys more accurate. The 3D visual model of kidney anatomy will help clinicians plan operations accurately before surgery. However, due to the diversity of the internal structure of the kidney and the low grey level of the edge. It is still challenging to separate the different parts of the kidney in a clear and accurate way. In this paper, we propose a channel extending and axial attention catching Network(CANet) for multi-structure kidney segmentation. Our solution is founded based on the thriving nn-UNet architecture. Firstly, by extending the channel size, we propose a larger network, which can provide a broader perspective, facilitating the extraction of complex structural information. Secondly, we include an axial attention catching(AAC) module in the decoder, which can obtain detailed information for refining the edges. We evaluate our CANet on the KiPA2022 dataset, achieving the dice scores of 95.8%, 89.1%, 87.5% and 84.9% for kidney, tumor, artery and vein, respectively, which helps us get fourth place in the challenge.

eess.IV↗

arXiv2023

A Complementary Global and Local Knowledge Network for Ultrasound denoising with Fine-grained Refinement

Ultrasound imaging serves as an effective and non-invasive diagnostic tool commonly employed in clinical examinations. However, the presence of speckle noise in ultrasound images invariably degrades image quality, impeding the performance of subsequent tasks, such as segmentation and classification. Existing methods for speckle noise reduction frequently induce excessive image smoothing or fail to preserve detailed information adequately. In this paper, we propose a complementary global and local knowledge network for ultrasound denoising with fine-grained refinement. Initially, the proposed architecture employs the L-CSwinTransformer as encoder to capture global information, incorporating CNN as decoder to fuse local features. We expand the resolution of the feature at different stages to extract more global information compared to the original CSwinTransformer. Subsequently, we integrate Fine-grained Refinement Block (FRB) within the skip-connection stage to further augment features. We validate our model on two public datasets, HC18 and BUSI. Experimental results demonstrate that our model can achieve competitive performance in both quantitative metrics and visual performance. Our code will be available at https://github.com/AAlkaid/USDenoising.

cs.CV↗