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Zhenyu Li

Publications and source records attributed to Zhenyu Li.

At least 145 records · Page 8Linked to original sources

Autonomous Robotic Screening of Tubular Structures based only on Real-Time Ultrasound Imaging Feedback

Ultrasound (US) imaging is widely employed for diagnosis and staging of peripheral vascular diseases (PVD), mainly due to its high availability and the fact it does not emit radiation. However, high inter-operator variability and a lack of repeatability of US image acquisition hinder the implementation of extensive screening programs. To address this challenge, we propose an end-to-end workflow for automatic robotic US screening of tubular structures using only the real-time US imaging feedback. We first train a U-Net for real-time segmentation of the vascular structure from cross-sectional US images. Then, we represent the detected vascular structure as a 3D point cloud and use it to estimate the longitudinal axis of the target tubular structure and its mean radius by solving a constrained non-linear optimization problem. Iterating the previous processes, the US probe is automatically aligned to the orientation normal to the target tubular tissue and adjusted online to center the tracked tissue based on the spatial calibration. The real-time segmentation result is evaluated both on a phantom and in-vivo on brachial arteries of volunteers. In addition, the whole process is validated both in simulation and physical phantoms. The mean absolute radius error and orientation error ($\pm$ SD) in the simulation are $1.16\pm0.1~mm$ and $2.7\pm3.3^{\circ}$, respectively. On a gel phantom, these errors are $1.95\pm2.02~mm$ and $3.3\pm2.4^{\circ}$. This shows that the method is able to automatically screen tubular tissues with an optimal probe orientation (i.e. normal to the vessel) and at the same to accurately estimate the mean radius, both in real-time.

cs.RO↗

NetFC: enabling accurate floating-point arithmetic on programmable switches

In-network computation has been widely used to accelerate data-intensive distributed applications. Some computational tasks, traditional performed on servers, are offloaded to the network (i.e. programmable switches). However, the computational capacity of programmable switches is limited to simple integer arithmetic operations while many of applications require on-the-fly floating-point operations. To address this issue, prior approaches either adopt a float-to-integer method or directly offload computational tasks to the local CPUs of switches, incurring accuracy loss and delayed processing. To this end, we propose NetFC, a table-lookup method to achieve on-the-fly in-network floating-point arithmetic operations nearly without accuracy loss. NetFC adopts a divide-and-conquer mechanism that converts the original huge table into several much small tables together with some integer operations. NetFC adopts a scaling-factor mechanism for computational accuracy improvement, and a prefix-based lossless table compression method to reduce the memory overhead. We use different types of datasets to evaluate NetFC. The experimental results show that the average accuracy of NetFC can be as high as up to 99.94% at worst with only 448KB memory consumption. Furthermore, we integrate NetFC into Sonata for detecting Slowloris attack, yielding significant decrease of detection delay.

cs.NI↗

Fast and Accurate Single-Image Depth Estimation on Mobile Devices, Mobile AI 2021 Challenge: Report

Depth estimation is an important computer vision problem with many practical applications to mobile devices. While many solutions have been proposed for this task, they are usually very computationally expensive and thus are not applicable for on-device inference. To address this problem, we introduce the first Mobile AI challenge, where the target is to develop an end-to-end deep learning-based depth estimation solutions that can demonstrate a nearly real-time performance on smartphones and IoT platforms. For this, the participants were provided with a new large-scale dataset containing RGB-depth image pairs obtained with a dedicated stereo ZED camera producing high-resolution depth maps for objects located at up to 50 meters. The runtime of all models was evaluated on the popular Raspberry Pi 4 platform with a mobile ARM-based Broadcom chipset. The proposed solutions can generate VGA resolution depth maps at up to 10 FPS on the Raspberry Pi 4 while achieving high fidelity results, and are compatible with any Android or Linux-based mobile devices. A detailed description of all models developed in the challenge is provided in this paper.

eess.IV↗

A Cloud connected NO2 and Ozone Sensor System for Personalized Pediatric Asthma Research and Management

This paper presents a cloud-connected indoor air quality sensor system that can be deployed to patients' homes to study personal microenvironmental exposure for asthma research and management. The system consists of multiple compact sensor units that can measure residential NO2, ozone, humidity, and temperature at one minute resolution and a cloud based informatic system that acquires, stores, and visualizes the microenvironmental data in real time. The sensor hardware can measure NO2 as low as 10 ppb and ozone at 15 ppb. The cloud informatic system is implemented using open-source software on Amazon Web Service for easy deployment and scalability. This system was successfully deployed to pediatric asthma patients' homes in a pilot study. In this study, we discovered that some families can have short term NO2 exposure higher than EPA's one hour exposure limit (100 ppb), and NO2 micropollution episodes often arise from natural gas appliance usage such as gas stove burning during cooking. By combining the personalized air pollutant exposure measurements with the physiological responses from a patient diary and medical record, this system can enable novel asthma research and personalized asthma management.

q-bio.QM↗

An efficient adaptive variational quantum solver of the Schrodinger equation based on reduced density matrices

Recently, an adaptive variational algorithm termed Adaptive Derivative-Assembled Pseudo-Trotter ansatz Variational Quantum Eigensolver (ADAPT-VQE) has been proposed by Grimsley et al. (Nat. Commun. 10, 3007) while the number of measurements required to perform this algorithm scales O(N^8). In this work, we present an efficient adaptive variational quantum solver of the Schrodinger equation based on ADAPT-VQE together with the reduced density matrix reconstruction approach, which reduces the number of measurements from O(N^8) to O(N^4). This new algorithm is quite suitable for quantum simulations of chemical systems on near-term noisy intermediate-scale hardware due to low circuit complexity and reduced measurement. Numerical benchmark calculations for small molecules demonstrate that this new algorithm provides an accurate description of the ground-state potential energy curves. In addition, we generalize this new algorithm for excited states with the variational quantum deflation approach and achieve the same accuracy as ground-state simulations.

quant-ph↗

Simulating periodic systems on quantum computer

The variational quantum eigensolver (VQE) is one of the most appealing quantum algorithms to simulate electronic structure properties of molecules on near-term noisy intermediate-scale quantum devices. In this work, we generalize the VQE algorithm for simulating extended systems. However, the numerical study of an one-dimensional (1D) infinite hydrogen chain using existing VQE algorithms shows a remarkable deviation of the ground state energy with respect to the exact full configuration interaction (FCI) result. Here, we present two schemes to improve the accuracy of quantum simulations for extended systems. The first one is a modified VQE algorithm, which introduces an unitary transformation of Hartree-Fock orbitals to avoid the complex Hamiltonian. The second one is a Post-VQE approach combining VQE with the quantum subspace expansion approach (VQE/QSE). Numerical benchmark calculations demonstrate that both of two schemes provide an accurate enough description of the potential energy curve of the 1D hydrogen chain. In addition, excited states computed with the VQE/QSE approach also agree very well with FCI results.

quant-ph↗

Cross-layer Path Selection in Multi-path Transport Protocol for Mobile Devices

MPTCP is a new transport protocol that enables mobile devices to use multiple physical paths simultaneously through several network interfaces, such as WiFi and Cellular. However, wireless path capacities change frequently in the mobile environments, causing challenges for path selection. For example, WiFi associated paths often become poor as devices walk away, since WiFi has intermittent connectivity caused by the short signal coverage and stochastic interference. MPTCP's native decision based on hysteretic TCP-layer estimation will miss the real switching point of wireless quality, which may cumulate packets on the broken path and causes serious packets reinjection. Through analyzing a unique dataset in the wild, we quantitatively study the impact of MAC-layer factors on the aggregated performance of MPTCP. We then propose a decision tree approach for cross-layer path selection that decides which path to carry the incoming packets dynamically according to the prior learned schemes. A prototype of the path selection system named SmartPS, which proactively probes the wireless environments, is realized and deployed in Linux and Android. Evaluation results demonstrate that our SmartPS can efficiently utilize the faster path, with goodput improvements of up to 29%.

cs.NI↗

Can High-Temperature Reactions Be Described by a Minimum Energy Path Model? Steric Hindrance Matters

High-temperature reactions widely exist in nature. However, they are difficult to be characterized either experimentally or computationally. The routinely used minimum energy path (MEP) model in computational modeling of chemical reactions is not justified to describe high-temperature reactions since high-energy structures are actively involved there. In this study, using CH4 decomposition on the Cu(111) surface as an example, we systematically compare MEP results with those obtained by explicitly sampling all relevant structures via ab initio molecular dynamics (AIMD) simulations at different temperatures. Interestingly, we find that, for reactions protected by a strong steric hindrance effect, the MEP is still effectively followed even at a temperature close to the Cu melting point. In contrast, without such a protection, the flexibility of surface Cu atoms can lead to a significant free energy barrier reduction at a high temperature. Accordingly, some conclusions about graphene growth mechanisms based on MEP calculations should be revisited. Physical insights provided by this study can deepen our understanding on high-temperature surface reactions.

physics.chem-ph↗

Estimation of genomic characteristics by analyzing k-mer frequency in de novo genome projects

Background: With the fast development of next generation sequencing technologies, increasing numbers of genomes are being de novo sequenced and assembled. However, most are in fragmental and incomplete draft status, and thus it is often difficult to know the accurate genome size and repeat content. Furthermore, many genomes are highly repetitive or heterozygous, posing problems to current assemblers utilizing short reads. Therefore, it is necessary to develop efficient assembly-independent methods for accurate estimation of these genomic characteristics. Results: Here we present a framework for modeling the distribution of k-mer frequency from sequencing data and estimating the genomic characteristics such as genome size, repeat structure and heterozygous rate. By introducing novel techniques of k-mer individuals, float precision estimation, and proper treatment of sequencing error and coverage bias, the estimation accuracy of our method is significantly improved over existing methods. We also studied how the various genomic and sequencing characteristics affect the estimation accuracy using simulated sequencing data, and discussed the limitations on applying our method to real sequencing data. Conclusion: Based on this research, we show that the k-mer frequency analysis can be used as a general and assembly-independent method for estimating genomic characteristics, which can improve our understanding of a species genome, help design the sequencing strategy of genome projects, and guide the development of assembly algorithms. The programs developed in this research are written using C/C++, and freely accessible at Github URL (https://github.com/fanagislab/GCE) or BGI ftp ( ftp://ftp.genomics.org.cn/pub/gce).

q-bio.GN↗

Predictions of 2019-nCoV Transmission Ending via Comprehensive Methods

Since the SARS outbreak in 2003, a lot of predictive epidemiological models have been proposed. At the end of 2019, a novel coronavirus, termed as 2019-nCoV, has broken out and is propagating in China and the world. Here we propose a multi-model ordinary differential equation set neural network (MMODEs-NN) and model-free methods to predict the interprovincial transmissions in mainland China, especially those from Hubei Province. Compared with the previously proposed epidemiological models, the proposed network can simulate the transportations with the ODEs activation method, while the model-free methods based on the sigmoid function, Gaussian function, and Poisson distribution are linear and fast to generate reasonable predictions. According to the numerical experiments and the realities, the special policies for controlling the disease are successful in some provinces, and the transmission of the epidemic, whose outbreak time is close to the beginning of China Spring Festival travel rush, is more likely to decelerate before February 18 and to end before April 2020. The proposed mathematical and artificial intelligence methods can give consistent and reasonable predictions of the 2019-nCoV ending. We anticipate our work to be a starting point for comprehensive prediction researches of the 2019-nCoV.

q-bio.PE↗

A Discreet Wearable IoT Sensor for Continuous Transdermal Alcohol Monitoring -- Challenges and Opportunities

Non-invasive continuous alcohol monitoring has potential applications in both population research and in clinical management of acute alcohol intoxication or chronic alcoholism. Current wearable monitors based on transdermal alcohol content (TAC) sensing are relatively bulky and have limited quantification accuracy. Here we describe the development of a discreet wearable transdermal alcohol (TAC) sensor in the form of a wristband or armband. This novel sensor can detect vapor-phase alcohol in perspiration from 0.09 ppm (equivalent to 0.09 mg/dL sweat alcohol concentration at 25 °C under Henry's Law equilibrium) to over 500 ppm at one-minute time resolution. The TAC sensor is powered by a 110 mAh lithium battery that lasts for over 7 days. In addition, the sensor can function as a medical "internet-of-things" (IoT) device by connecting to an Android smartphone gateway via Bluetooth Low Energy (BLE) and upload data to a cloud informatics system. Such wearable IoT sensors may enable large-scale alcohol-related research and personalized management. We also present evidence suggesting a hypothesis that perspiration rate is the dominant factor leading to TAC measurement variabilities, which may inform more reproducible and accurate TAC sensor designs in the future.

cs.HC↗

RVH: Range-Vector Hash for Fast Online Packet Classification

Packet classification according to multi-field ruleset is a key component for many network applications. Emerging software defined networking and cloud computing need to update the rulesets frequently for flexible policy configuration. Their success depends on the availability of the new generation of classifiers that can support both fast ruleset updating and high-speed packet classification. However, existing packet classification approaches focus either on high-speed packet classification or fast rule update, but no known scheme meets both requirements. In this paper, we propose Range-vector Hash (RVH) to effectively accelerate the packet classification with a hash-based algorithm while ensuring the fast rule update. RVH is built on our key observation that the number of distinct combinations of each field prefix lengths is not evenly distributed. To reduce the number of hash tables for fast classification, we introduce a novel concept range-vector with each specified the length range of each field prefix of the projected rules. RVH can overcome the major obstacle that hinders hash-based packet classification by balancing the number of hash tables and the probability of hash collision. Experimental results demonstrate that RVH can achieve the classification speed up to 15.7 times and the update speed up to 2.3 times that of the state-of-the-art algorithms on average, while only consuming 44% less memory.

cs.NI↗

Interlayer Topological Transport and Devices based on Layer Pseudospins in Photonic Valley-Hall Phases

Valley-Hall phases, first proposed in two-dimensional (2D) materials, originate from nontrivial topologies around valleys which denote local extrema in momentum space. Since they are extended into classical systems, their designs draw inspirations from existing quantum counterparts, and their transports show similar topological protections. In contrast, it is recently established in acoustics that layer pseudospins in valley-Hall phases can give rise to special valley-Hall edge states with fundamentally different transport behaviors at the interfaces compared with various 2D materials. Their realization in other classical systems, such as photonics, would allow us to design topological insulators beyond quantum inspirations. In this work, we show that layer pseudospins exist in photonic valley-Hall phases, using vertically coupled designer surface plasmon crystals, a non-radiative system in open environment supporting tightly-confined propagating modes. The negligible thermal and radiative losses in our structure pave the way for our direct observations of the layer pseudospins and associated topological phenomena stemmed from them in both real and reciprocal spaces. Photonic devices that manipulate signals based on layer pseudospins of the topological phases, such as layer convertors and layer-selected delay lines, are experimentally demonstrated, confirming the potential applications of layer pseudospins as a new degree of freedom carrying information.

physics.optics↗

Extracting Critical Exponent by Finite-Size Scaling with Convolutional Neural Networks

Machine learning has been successfully applied to identify phases and phase transitions in condensed matter systems. However, quantitative characterization of the critical fluctuations near phase transitions is lacking. In this study we propose a finite-size scaling approach based on a convolutional neural network and analyze the critical behavior of a quantum Hall plateau transition. The localization length critical exponent learned by the neural network is consistent with the value obtained by conventional approaches. We show that the general-purposed method can be used to extract critical exponents in models with drastically different physics and input data, such as the two-dimensional Ising model and 4-state Potts model.

cond-mat.dis-nn↗

A Wearable IoT Aldehyde Sensor for Pediatric Asthma Research and Management

Mechanistic studies of pediatric asthma require objective measures of environmental exposure metrics correlated with physiological responses. Here we report a cloud-based wearable IoT sensor system which can measure an asthma patient's exposure to aldehydes, a known class of airway irritants, in real-life settings. The wrist-watch form sensor measures formaldehyde levels in air using fuel cell technology, and continuously operate over 7 days without recharging. Sensor data can be retrieved via Bluetooth Low Energy (BLE) communication. A smartphone app was developed as a gateway to transmit data to an informatics system deployed on Amazon Web Services (AWS) for data storage, management and analytics. Potential applications of this IoT sensor system include epidemiological studies of asthma development and exacerbation, personalized asthma management and environmental monitoring.

physics.med-ph↗

Electron-phonon interaction in Ca2N monolayer: intrinsic mobility of electrene

Electron-phonon(e-ph) interaction in Ca2N monolayer, the first electrene material with two-dimensional(2D) electron gas floating in free space, is expected to be very weak and such a character can be used to design weak-scattering transport channels. Therefore, it is highly desirable to quantitatively evaluate the carrier mobility of electrene. In this study, e-ph interaction in Ca2N monolayer is investigated using a precise Wannier interpolation-based first principles technique. The calculated e-ph coupling matrix elements of Ca2N monolayer are indeed small compared to other 2D materials such as graphene, which leads to an intrinsic mobility of 189 cm2V-1s-1, much higher than those of conventional metals. Other factors affecting mobility are discussed in a comparison with graphene. It is predicted that, based on a momentum mismatch mechanism, mobility of Ca2N monolayer can be increased further to above 3000 cm2V-1s-1 via hole doping. Our results confirm that Ca2N electrene is a promising electronic material.

physics.comp-ph↗

Locating the boundaries of Pareto fronts: A Many-Objective Evolutionary Algorithm Based on Corner Solution Search

In this paper, an evolutionary many-objective optimization algorithm based on corner solution search (MaOEA-CS) was proposed. MaOEA-CS implicitly contains two phases: the exploitative search for the most important boundary optimal solutions - corner solutions, at the first phase, and the use of angle-based selection [1] with the explorative search for the extension of PF approximation at the second phase. Due to its high efficiency and robustness to the shapes of PFs, it has won the CEC'2017 Competition on Evolutionary Many-Objective Optimization. In addition, MaOEA-CS has also been applied on two real-world engineering optimization problems with very irregular PFs. The experimental results show that MaOEA-CS outperforms other six state-of-the-art compared algorithms, which indicates it has the ability to handle real-world complex optimization problems with irregular PFs.

cs.AI↗

Identifying Product Order with Restricted Boltzmann Machines

Unsupervised machine learning via a restricted Boltzmann machine is an useful tool in distinguishing an ordered phase from a disordered phase. Here we study its application on the two-dimensional Ashkin-Teller model, which features a partially ordered product phase. We train the neural network with spin configuration data generated by Monte Carlo simulations and show that distinct features of the product phase can be learned from non-ergodic samples resulting from symmetry breaking. Careful analysis of the weight matrices inspires us to define a nontrivial machine-learning motivated quantity of the product form, which resembles the conventional product order parameter.

cond-mat.dis-nn↗