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Zhenyue Qin

Publications and source records attributed to Zhenyue Qin.

At least 19 recordsLinked to original sources

Toward Federated Large Language Models in Medicine: A Parameter-Efficient Framework for Privacy-Preserving, Multi-Institutional Adaptation

Large language models (LLMs) are increasingly adapted for medical applications, but most are trained using data from a single institution because privacy and governance constraints prevent multi-institutional data sharing. As a result, these models often generalize poorly across heterogeneous healthcare systems. We address this gap by introducing Fed-MedLoRA and Fed-MedLoRA+, a parameter-efficient federated framework for collaborative LLM adaptation across healthcare institutions. Fed-MedLoRA transmits only low-rank adapters rather than full model weights, reducing communication overhead. We also evaluate a privacy-preserving variant that applies Gaussian perturbation to transmitted adapter updates. Fed-MedLoRA+ further incorporates adaptive aggregation to better address cross-site heterogeneity in patient populations, annotation practices, and disease distributions. We evaluate the framework on clinical information extraction across five independent patient cohorts totaling 42,198 entities and 41,570 relations, and compare it with zero-shot and fine-tuned LLMs, domain-specific BERT models, and federated baselines. Across all settings, the proposed methods consistently improve extraction performance and generalize better to heterogeneous cohorts. In a real-world case study using clinical notes from the Yale New Haven Health System, the framework demonstrates strong performance under low-resource new-site deployment. These results suggest that federated, parameter-efficient LLM adaptation is feasible, scalable, and effective for multi-institutional clinical deployment.

cs.CL

Beyond Medical Diagnostics: How Medical Multimodal Large Language Models Think in Space

Visual spatial intelligence is critical for medical image interpretation, yet remains largely unexplored in Multimodal Large Language Models (MLLMs) for 3D imaging. This gap persists due to a systemic lack of datasets featuring structured 3D spatial annotations beyond basic labels. In this study, we introduce an agentic pipeline that autonomously synthesizes spatial visual question-answering (VQA) data by orchestrating computational tools such as volume estimation and bounding boxes extraction with multi-agent collaboration and expert radiologist validation. We present SpatialMed, the first comprehensive benchmark for evaluating 3D spatial intelligence in medical MLLMs, comprising 31,253 question-answer pairs across multiple organs and tumor types. Our evaluations on 24 state-of-the-art MLLMs and extensive analyses reveal that current models lack robust spatial reasoning capabilities for medical imaging.

cs.CV

Representation-Centric Survey of Supervised Skeletal Action Recognition and the New Benchmark

3D skeletal action recognition has emerged as a powerful alternative to traditional RGB and depth-based approaches, offering robustness to environmental variations, computational efficiency, and enhanced privacy. Despite remarkable progress, current research remains fragmented across diverse input representations and lacks evaluation under scenarios that reflect real-world challenges. This paper presents a representation-centric review of supervised skeletal action recognition, systematically categorizing state-of-the-art methods by their input feature types: joint coordinates, bone vectors, motion flows, and extended representations, and analyzing how these choices influence spatiotemporal modeling strategies. Building on the insights from this review, we introduce ANUBIS, a large-scale, challenging dataset designed to address critical gaps in existing benchmarks. ANUBIS incorporates multi-view recordings with back-view perspectives, complex multi-person interactions, fine-grained and violent actions, and contemporary social behaviors. We benchmark a diverse set of state-of-the-art models on ANUBIS and conduct an in-depth analysis of how different feature types affect recognition performance across 102 action categories. Our results show strong action-feature dependencies, highlight the limitations of naive multi-representational fusion, and point toward the need for task-aware, semantically aligned integration strategies. This work offers both a comprehensive foundation and a practical benchmarking resource, aiming to guide the next generation of robust, generalizable skeleton-based action recognition systems for complex real-world scenarios. The dataset, benchmarking framework, and code are available at https://yliu1082.github.io/ANUBIS/.

cs.CV

Are Multimodal LLMs Ready for Clinical Dermatology? A Real-World Evaluation in Dermatology

Multimodal large language models (MLLMs) have demonstrated promise on publicly available dermatology benchmarks. However, benchmark performance may not generalize to real-world dermatologic decision-making. To quantify this benchmark-to-bedside gap, we evaluated four open-weight MLLMs (InternVL-Chat v1.5, LLaVA-Med v1.5, SkinGPT4 and MedGemma-4B-Instruct) and one commercial MLLM (GPT-4.1) across three publicly available dermatology datasets and a retrospective multi-site hospital-based dermatology consultation cohort comprising 5,811 cases and 46,405 clinical images. Models were evaluated on two clinically relevant tasks: differential diagnosis generation and severity-based triage. Diagnostic performance was modest on public datasets and declined substantially in the real-world cohort. On public benchmarks, top-3 diagnostic accuracy reached 26.55% for the best open-weight model and 42.25% for GPT-4.1. On real-world consultation cases using images alone, top-3 diagnostic accuracy fell to 1.50%-13.35% among open-weight models and 24.65% for GPT-4.1. Incorporating clinical context improved performance across all models, increasing top-3 diagnostic accuracy up to 28.75% among open-weight models and 38.93% for GPT-4.1. However, model outputs were highly sensitive to incomplete or erroneous consultation context. For severity-based triage, models achieved moderate sensitivity (above 60%), suggesting potential utility for screening but insufficient reliability for clinical deployment. These findings demonstrate that benchmark performance substantially overestimates the real-world clinical capability of current dermatology MLLMs.

cs.CV

SonoSelect: Efficient Ultrasound Perception via Active Probe Exploration

Ultrasound perception typically requires multiple scan views through probe movement to reduce diagnostic ambiguity, mitigate acoustic occlusions, and improve anatomical coverage. However, not all probe views are equally informative. Exhaustively acquiring a large number of views can introduce substantial redundancy, increase scanning and processing costs. To address this, we define an active view exploration task for ultrasound and propose SonoSelect, an ultrasound-specific method that adaptively guides probe movement based on current observations. Specifically, we cast ultrasound active view exploration as a sequential decision-making problem. Each new 2D ultrasound view is fused into a 3D spatial memory of the observed anatomy, which guides the next probe position. On top of this formulation, we propose an ultrasound-specific objective that favors probe movements with greater organ coverage, lower reconstruction uncertainty, and less redundant scanning. Experiments on the ultrasound simulator show that SonoSelect achieves promising multi-view organ classification accuracy using only 2 out of N views. Furthermore, for a more difficult kidney cyst detection task, it reaches 54.56% kidney coverage and 35.13% cyst coverage, with short trajectories consistently centered on the target cyst.

cs.CV

VOLMO: Versatile and Open Large Models for Ophthalmology

Vision impairment affects millions globally, and early detection is critical to preventing irreversible vision loss. Ophthalmology workflows require clinicians to integrate medical images, structured clinical data, and free-text notes to determine disease severity and management, which is time-consuming and burdensome. Recent multimodal large language models (MLLMs) show promise, but existing general and medical MLLMs perform poorly in ophthalmology, and few ophthalmology-specific MLLMs are openly available. We present VOLMO (Versatile and Open Large Models for Ophthalmology), a model-agnostic, data-open framework for developing ophthalmology-specific MLLMs. VOLMO includes three stages: ophthalmology knowledge pretraining on 86,965 image-text pairs from 26,569 articles across 82 journals; domain task fine-tuning on 26,929 annotated instances spanning 12 eye conditions for disease screening and severity classification; and multi-step clinical reasoning on 913 patient case reports for assessment, planning, and follow-up care. Using this framework, we trained a compact 2B-parameter MLLM and compared it with strong baselines, including InternVL-2B, LLaVA-Med-7B, MedGemma-4B, MedGemma-27B, and RETFound. We evaluated these models on image description generation, disease screening and staging classification, and assessment-and-management generation, with additional manual review by two healthcare professionals and external validation on three independent cohorts for age-related macular degeneration and diabetic retinopathy. Across settings, VOLMO-2B consistently outperformed baselines, achieving stronger image description performance, an average F1 of 87.4% across 12 eye conditions, and higher scores in external validation.

cs.CV

Mind the Rarities: Can Rare Skin Diseases Be Reliably Diagnosed via Diagnostic Reasoning?

Large vision-language models (LVLMs) demonstrate strong performance in dermatology; however, evaluating diagnostic reasoning for rare conditions remains largely unexplored. Existing benchmarks focus on common diseases and assess only final accuracy, overlooking the clinical reasoning process, which is critical for complex cases. We address this gap by constructing DermCase, a long-context benchmark derived from peer-reviewed case reports. Our dataset contains 26,030 multi-modal image-text pairs and 6,354 clinically challenging cases, each annotated with comprehensive clinical information and step-by-step reasoning chains. To enable reliable evaluation, we establish DermLIP-based similarity metrics that achieve stronger alignment with dermatologists for assessing differential diagnosis quality. Benchmarking 22 leading LVLMs exposes significant deficiencies across diagnosis accuracy, differential diagnosis, and clinical reasoning. Fine-tuning experiments demonstrate that instruction tuning substantially improves performance while Direct Preference Optimization (DPO) yields minimal gains. Systematic error analysis further reveals critical limitations in current models' reasoning capabilities.

cs.CV

LMOD+: A Comprehensive Multimodal Dataset and Benchmark for Developing and Evaluating Multimodal Large Language Models in Ophthalmology

Vision-threatening eye diseases pose a major global health burden, with timely diagnosis limited by workforce shortages and restricted access to specialized care. While multimodal large language models (MLLMs) show promise for medical image interpretation, advancing MLLMs for ophthalmology is hindered by the lack of comprehensive benchmark datasets suitable for evaluating generative models. We present a large-scale multimodal ophthalmology benchmark comprising 32,633 instances with multi-granular annotations across 12 common ophthalmic conditions and 5 imaging modalities. The dataset integrates imaging, anatomical structures, demographics, and free-text annotations, supporting anatomical structure recognition, disease screening, disease staging, and demographic prediction for bias evaluation. This work extends our preliminary LMOD benchmark with three major enhancements: (1) nearly 50% dataset expansion with substantial enlargement of color fundus photography; (2) broadened task coverage including binary disease diagnosis, multi-class diagnosis, severity classification with international grading standards, and demographic prediction; and (3) systematic evaluation of 24 state-of-the-art MLLMs. Our evaluations reveal both promise and limitations. Top-performing models achieved ~58% accuracy in disease screening under zero-shot settings, and performance remained suboptimal for challenging tasks like disease staging. We will publicly release the dataset, curation pipeline, and leaderboard to potentially advance ophthalmic AI applications and reduce the global burden of vision-threatening diseases.

cs.CV

GeoDANO: Geometric VLM with Domain Agnostic Vision Encoder

We introduce GeoDANO, a geometric vision-language model (VLM) with a domain-agnostic vision encoder, for solving plane geometry problems. Although VLMs have been employed for solving geometry problems, their ability to recognize geometric features remains insufficiently analyzed. To address this gap, we propose a benchmark that evaluates the recognition of visual geometric features, including primitives such as dots and lines, and relations such as orthogonality. Our preliminary study shows that vision encoders often used in general-purpose VLMs, e.g., OpenCLIP, fail to detect these features and struggle to generalize across domains. To overcome the limitation, we develop GeoCLIP, a CLIP-based model trained on synthetic geometric diagram--caption pairs. Benchmark results show that GeoCLIP outperforms existing vision encoders in recognizing geometric features. We then propose our VLM, GeoDANO, which augments GeoCLIP with a domain adaptation strategy for unseen diagram styles. GeoDANO outperforms specialized methods for plane geometry problems and GPT-4o on MathVerse. The implementation is available at https://github.com/ml-postech/GeoDANO.

cs.CV

HandCraft: Anatomically Correct Restoration of Malformed Hands in Diffusion Generated Images

Generative text-to-image models, such as Stable Diffusion, have demonstrated a remarkable ability to generate diverse, high-quality images. However, they are surprisingly inept when it comes to rendering human hands, which are often anatomically incorrect or reside in the "uncanny valley". In this paper, we propose a method HandCraft for restoring such malformed hands. This is achieved by automatically constructing masks and depth images for hands as conditioning signals using a parametric model, allowing a diffusion-based image editor to fix the hand's anatomy and adjust its pose while seamlessly integrating the changes into the original image, preserving pose, color, and style. Our plug-and-play hand restoration solution is compatible with existing pretrained diffusion models, and the restoration process facilitates adoption by eschewing any fine-tuning or training requirements for the diffusion models. We also contribute MalHand datasets that contain generated images with a wide variety of malformed hands in several styles for hand detector training and hand restoration benchmarking, and demonstrate through qualitative and quantitative evaluation that HandCraft not only restores anatomical correctness but also maintains the integrity of the overall image.

cs.CV

Plane Geometry Problem Solving with Multi-modal Reasoning: A Survey

Plane geometry problem solving (PGPS) has recently gained significant attention as a benchmark to assess the multi-modal reasoning capabilities of large vision-language models. Despite the growing interest in PGPS, the research community still lacks a comprehensive overview that systematically synthesizes recent work in PGPS. To fill this gap, we present a survey of existing PGPS studies. We first categorize PGPS methods into an encoder-decoder framework and summarize the corresponding output formats used by their encoders and decoders. Subsequently, we classify and analyze these encoders and decoders according to their architectural designs. Finally, we outline major challenges and promising directions for future research. In particular, we discuss the hallucination issues arising during the encoding phase within encoder-decoder architectures, as well as the problem of data leakage in current PGPS benchmarks.

cs.CV

LMOD: A Large Multimodal Ophthalmology Dataset and Benchmark for Large Vision-Language Models

The prevalence of vision-threatening eye diseases is a significant global burden, with many cases remaining undiagnosed or diagnosed too late for effective treatment. Large vision-language models (LVLMs) have the potential to assist in understanding anatomical information, diagnosing eye diseases, and drafting interpretations and follow-up plans, thereby reducing the burden on clinicians and improving access to eye care. However, limited benchmarks are available to assess LVLMs' performance in ophthalmology-specific applications. In this study, we introduce LMOD, a large-scale multimodal ophthalmology benchmark consisting of 21,993 instances across (1) five ophthalmic imaging modalities: optical coherence tomography, color fundus photographs, scanning laser ophthalmoscopy, lens photographs, and surgical scenes; (2) free-text, demographic, and disease biomarker information; and (3) primary ophthalmology-specific applications such as anatomical information understanding, disease diagnosis, and subgroup analysis. In addition, we benchmarked 13 state-of-the-art LVLM representatives from closed-source, open-source, and medical domains. The results demonstrate a significant performance drop for LVLMs in ophthalmology compared to other domains. Systematic error analysis further identified six major failure modes: misclassification, failure to abstain, inconsistent reasoning, hallucination, assertions without justification, and lack of domain-specific knowledge. In contrast, supervised neural networks specifically trained on these tasks as baselines demonstrated high accuracy. These findings underscore the pressing need for benchmarks in the development and validation of ophthalmology-specific LVLMs.

cs.CV

Position-Sensing Graph Neural Networks: Proactively Learning Nodes Relative Positions

Most existing graph neural networks (GNNs) learn node embeddings using the framework of message passing and aggregation. Such GNNs are incapable of learning relative positions between graph nodes within a graph. To empower GNNs with the awareness of node positions, some nodes are set as anchors. Then, using the distances from a node to the anchors, GNNs can infer relative positions between nodes. However, P-GNNs arbitrarily select anchors, leading to compromising position-awareness and feature extraction. To eliminate this compromise, we demonstrate that selecting evenly distributed and asymmetric anchors is essential. On the other hand, we show that choosing anchors that can aggregate embeddings of all the nodes within a graph is NP-complete. Therefore, devising efficient optimal algorithms in a deterministic approach is practically not feasible. To ensure position-awareness and bypass NP-completeness, we propose Position-Sensing Graph Neural Networks (PSGNNs), learning how to choose anchors in a back-propagatable fashion. Experiments verify the effectiveness of PSGNNs against state-of-the-art GNNs, substantially improving performance on various synthetic and real-world graph datasets while enjoying stable scalability. Specifically, PSGNNs on average boost AUC more than 14% for pairwise node classification and 18% for link prediction over the existing state-of-the-art position-aware methods. Our source code is publicly available at: https://github.com/ZhenyueQin/PSGNN.

cs.LG

Visual Prompting in LLMs for Enhancing Emotion Recognition

Vision Large Language Models (VLLMs) are transforming the intersection of computer vision and natural language processing. Nonetheless, the potential of using visual prompts for emotion recognition in these models remains largely unexplored and untapped. Traditional methods in VLLMs struggle with spatial localization and often discard valuable global context. To address this problem, we propose a Set-of-Vision prompting (SoV) approach that enhances zero-shot emotion recognition by using spatial information, such as bounding boxes and facial landmarks, to mark targets precisely. SoV improves accuracy in face count and emotion categorization while preserving the enriched image context. Through a battery of experimentation and analysis of recent commercial or open-source VLLMs, we evaluate the SoV model's ability to comprehend facial expressions in natural environments. Our findings demonstrate the effectiveness of integrating spatial visual prompts into VLLMs for improving emotion recognition performance.

cs.CV

Authentic Emotion Mapping: Benchmarking Facial Expressions in Real News

In this paper, we present a novel benchmark for Emotion Recognition using facial landmarks extracted from realistic news videos. Traditional methods relying on RGB images are resource-intensive, whereas our approach with Facial Landmark Emotion Recognition (FLER) offers a simplified yet effective alternative. By leveraging Graph Neural Networks (GNNs) to analyze the geometric and spatial relationships of facial landmarks, our method enhances the understanding and accuracy of emotion recognition. We discuss the advancements and challenges in deep learning techniques for emotion recognition, particularly focusing on Graph Neural Networks (GNNs) and Transformers. Our experimental results demonstrate the viability and potential of our dataset as a benchmark, setting a new direction for future research in emotion recognition technologies. The codes and models are at: https://github.com/wangzhifengharrison/benchmark_real_news

cs.CV

Detecting and Restoring Non-Standard Hands in Stable Diffusion Generated Images

We introduce a pipeline to address anatomical inaccuracies in Stable Diffusion generated hand images. The initial step involves constructing a specialized dataset, focusing on hand anomalies, to train our models effectively. A finetuned detection model is pivotal for precise identification of these anomalies, ensuring targeted correction. Body pose estimation aids in understanding hand orientation and positioning, crucial for accurate anomaly correction. The integration of ControlNet and InstructPix2Pix facilitates sophisticated inpainting and pixel-level transformation, respectively. This dual approach allows for high-fidelity image adjustments. This comprehensive approach ensures the generation of images with anatomically accurate hands, closely resembling real-world appearances. Our experimental results demonstrate the pipeline's efficacy in enhancing hand image realism in Stable Diffusion outputs. We provide an online demo at https://fixhand.yiqun.io

cs.CV

Anonymization for Skeleton Action Recognition

Skeleton-based action recognition attracts practitioners and researchers due to the lightweight, compact nature of datasets. Compared with RGB-video-based action recognition, skeleton-based action recognition is a safer way to protect the privacy of subjects while having competitive recognition performance. However, due to improvements in skeleton recognition algorithms as well as motion and depth sensors, more details of motion characteristics can be preserved in the skeleton dataset, leading to potential privacy leakage. We first train classifiers to categorize private information from skeleton trajectories to investigate the potential privacy leakage from skeleton datasets. Our preliminary experiments show that the gender classifier achieves 87% accuracy on average, and the re-identification classifier achieves 80% accuracy on average with three baseline models: Shift-GCN, MS-G3D, and 2s-AGCN. We propose an anonymization framework based on adversarial learning to protect potential privacy leakage from the skeleton dataset. Experimental results show that an anonymized dataset can reduce the risk of privacy leakage while having marginal effects on action recognition performance even with simple anonymizer architectures. The code used in our experiments is available at https://github.com/ml-postech/Skeleton-anonymization/

cs.CV

Fusing Higher-order Features in Graph Neural Networks for Skeleton-based Action Recognition

Skeleton sequences are lightweight and compact, and thus are ideal candidates for action recognition on edge devices. Recent skeleton-based action recognition methods extract features from 3D joint coordinates as spatial-temporal cues, using these representations in a graph neural network for feature fusion to boost recognition performance. The use of first- and second-order features, i.e., joint and bone representations, has led to high accuracy. Nonetheless, many models are still confused by actions that have similar motion trajectories. To address these issues, we propose fusing higher-order features in the form of angular encoding into modern architectures to robustly capture the relationships between joints and body parts. This simple fusion with popular spatial-temporal graph neural networks achieves new state-of-the-art accuracy in two large benchmarks, including NTU60 and NTU120, while employing fewer parameters and reduced run time. Our source code is publicly available at: https://github.com/ZhenyueQin/Angular-Skeleton-Encoding.

cs.CV