arXiv subjects

Zheyong Fan

Publications and source records attributed to Zheyong Fan.

At least 37 records · Page 2Linked to original sources

arXiv2025

PYSED: A tool for extracting kinetic-energy-weighted phonon dispersion and lifetime from molecular dynamics simulations

Machine learning potential-driven molecular dynamics (MD) simulations have significantly enhanced the predictive accuracy of thermal transport properties across diverse materials. However, extracting phonon-mode-resolved insights from these simulations remains a critical challenge. Here, we introduce PYSED, a Python-based package built on the spectral energy density (SED) method, designed to efficiently compute kinetic-energy-weighted phonon dispersion and extract phonon lifetime from large-scale MD simulation trajectories. By integrating high-accuracy machine-learned neuroevolution potential (NEP) models, we validate and showcase the effectiveness of the implemented SED method across systems of varying dimensionalities. Specifically, the NEP-driven MD-SED accurately reveals how phonon modes are affected by strain in carbon nanotubes, as well as by interlayer coupling strengths and the twist angles in two-dimensional molybdenum disulfide. For three-dimensional systems, the SED method effectively establishes the thermal transport regime diagram for metal-organic frameworks, distinguishing between particlelike and wavelike propagation regions. Moreover, using bulk silicon as an example, we show that phonon SED can efficiently capture quantum dynamics based on path-integral trajectories. The PYSED package bridges MD simulations with detailed phonon-mode insights, delivering a robust tool for investigating thermal transport properties with detailed mechanisms across various materials.

physics.comp-ph↗

arXiv2025

GPUTB: Efficient Machine Learning Tight-Binding Method for Large-Scale Electronic Properties Calculations

The high computational cost of ab-initio methods limits their application in predicting electronic properties at the device scale. Therefore, an efficient method is needed to map the atomic structure to the electronic structure quickly. Here, we develop GPUTB, a GPU-accelerated tight-binding (TB) machine learning framework. GPUTB employs atomic environment descriptors, enabling the model parameters to incorporate environmental dependence. This allows the model to transfer to different basis, xc-functionals, and allotropes easily. Combined with the linear scaling quantum transport method, we have calculated the electronic density of states for up to 100 million atoms in pristine graphene. Trained on finite-temperature structures, the model can be easily extended to millions of atom finite-temperature systems. Furthermore, GPUTB can also successfully describe h-BN/graphene heterojunction systems, demonstrating its capability to handle complex material with high precision. We accurately reproduce the relationship between carrier concentration and room temperature mobility in graphene to verify the framework's accuracy. Therefore, our GPUTB framework presents a delicate balance between computational accuracy and efficiency, providing a powerful computational tool for investing electronic properties for large systems with millions of atoms.

cond-mat.mtrl-sci↗

arXiv2025

Utilizing a machine-learned potential to explore enhanced radiation tolerance in the MoNbTaVW high-entropy alloy

High-entropy alloys (HEAs) based on tungsten (W) have emerged as promising candidates for plasma-facing components in future fusion reactors, owing to their excellent irradiation resistance. In this study, we construct an efficient machine-learned interatomic potential for the MoNbTaVW quinary system. This potential achieves computational speeds comparable to the embedded-atom method (EAM) potential, allowing us to conduct a comprehensive investigation of the primary radiation damage through molecular dynamics simulations. Threshold displacement energies (TDEs) in the MoNbTaVW HEA are investigated and compared with pure metals. A series of displacement cascade simulations at primary knock-on atom energies ranging from 10 to 150 keV reveal significant differences in defect generation and clustering between MoNbTaVW HEA and pure W. In HEAs, we observe more surviving Frenkel pairs (FPs) but fewer and smaller interstitial clusters compared to W, indicating superior radiation tolerance. We propose extended damage models to quantify the radiation dose in the MoNbTaVW HEA, and suggest that one reason for their enhanced resistance is subcascade splitting, which reduces the formation of interstitial clusters. Our findings provide critical insights into the fundamental irradiation resistance mechanisms in refractory body-centered cubic alloys, offering guidance for the design of future radiation-tolerant materials.

cond-mat.mtrl-sci↗

arXiv2025

Revealing the impact of chemical short-range order on radiation damage in MoNbTaVW high-entropy alloys using a machine-learning potential

The effect of chemical short-range order (CSRO) on primary radiation damage in MoNbTaVW high-entropy alloys is investigated using hybrid Monte Carlo/molecular dynamics simulations with a machine-learned potential. We show that CSRO enhances radiation tolerance by promoting interstitial diffusion while suppressing vacancy migration, thereby increasing defect recombination efficiency during recovery stage. However, CSRO is rapidly degraded under cumulative irradiation, with Warren-Cowley parameters dropping below 0.3 at a dose of only 0.03~dpa. This loss of ordering reduces the long-term enhancement of CSRO on radiation resistance. Our results highlight that while CSRO can effectively improve the radiation tolerance of MoNbTaVW, its stability under irradiation is critical to realizing and sustaining this benefit.

cond-mat.mtrl-sci↗

arXiv2025

NepTrain and NepTrainKit: Automated Active Learning and Visualization Toolkit for Neuroevolution Potentials

As a machine-learned potential, the neuroevolution potential (NEP) method features exceptional computational efficiency and has been successfully applied in materials science. Constructing high-quality training datasets is crucial for developing accurate NEP models. However, the preparation and screening of NEP training datasets remain a bottleneck for broader applications due to their time-consuming, labor-intensive, and resource-intensive nature. In this work, we have developed NepTrain and NepTrainKit, which are dedicated to initializing and managing training datasets to generate high-quality training sets while automating NEP model training. NepTrain is an open-source Python package that features a bond length filtering method to effectively identify and remove non-physical structures from molecular dynamics trajectories, thereby ensuring high-quality training datasets. NepTrainKit is a graphical user interface (GUI) software designed specifically for NEP training datasets, providing functionalities for data editing, visualization, and interactive exploration. It integrates key features such as outlier identification, farthest-point sampling, non-physical structure detection, and configuration type selection. The combination of these tools enables users to process datasets more efficiently and conveniently. Using $\rm CsPbI_3$ as a case study, we demonstrate the complete workflow for training NEP models with NepTrain and further validate the models through materials property predictions. We believe this toolkit will greatly benefit researchers working with machine learning interatomic potentials.

cs.LG↗

arXiv2025

A high-efficiency neuroevolution potential for tobermorite and calcium silicate hydrate systems with ab initio accuracy

Tobermorite and Calcium Silicate Hydrate (C-S-H) systems are indispensable cement materials but still lack a satisfactory interatomic potential with both high accuracy and high computational efficiency for better understanding their mechanical performance. Here, we develop a Neuroevolution Machine Learning Potential (NEP) with Ziegler-Biersack-Littmark hybrid framework for tobermorite and C-S-H systems, which conveys unprecedented efficiency in molecular dynamics simulations with substantially reduced training datasets. Our NEP model achieves prediction accuracy comparable to DFT calculations using just around 300 training structures, significantly fewer than other existing machine learning potentials trained for tobermorite. Critically, the GPU-accelerated NEP computations enable scalable simulations of large tobermorite systems, reaching several thousand atoms per GPU card with high efficiency. We demonstrate the NEP's versatility by accurately predicting mechanical properties, phonon density of states, and thermal conductivity of tobermorite. Furthermore, we extend the NEP application to large-scale simulations of amorphous C-S-H, highlighting its potential for comprehensive analysis of structural and mechanical behaviors under various realistic conditions.

cond-mat.mes-hall↗

arXiv2025

Lattice thermal conductivity of 16 elemental metals from molecular dynamics simulations with a unified neuroevolution potential

Metals play a crucial role in heat management in electronic devices, such as integrated circuits, making it vital to understand heat transport in elementary metals and alloys. In this work, we systematically study phonon thermal transport in 16 metals using the efficient homogeneous nonequilibrium molecular dynamics (HNEMD) method and the recently developed unified neuroevolution potential version 1 (UNEP-v1) for 16 metals and their alloys. We compare our results with existing ones based on the Boltzmann transport equation (BTE) approach and find that our HNEMD results align well with BTE results obtained by considering phonon-phonon scattering only. By contrast, HNEMD results based on the conventional embedded-atom method potential show less satisfactory agreement with BTE ones. Given the high accuracy of the UNEP-v1 model demonstrated in various metal alloys, we anticipate that the HNEMD method combined with the UNEP-v1 model will be a promising tool for exploring phonon thermal transport properties in complex systems such as high-entropy alloys.

cond-mat.mtrl-sci↗

arXiv2025

Accurate Modeling of Interfacial Thermal Transport in van der Waals Heterostructures via Hybrid Machine Learning and Registry-Dependent Potentials

Two-dimensional transition metal dichalcogenides (TMDs) exhibit remarkable thermal anisotropy due to their strong intralayer covalent bonding and weak interlayer van der Waals (vdW) interactions. However, accurately modeling their thermal transport properties remains a significant challenge, primarily due to the computational limitations of density functional theory (DFT) and the inaccuracies of classical force fields in non-equilibrium regimes. To address this, we use a recently developed hybrid computational framework that combines machine learning potential (MLP) for intralayer interactions with registry-dependent interlayer potential (ILP) for anisotropic vdW interlayer interaction, achieving near quantum mechanical accuracy. This approach demonstrates exceptional agreement with DFT calculations and experimental data for TMD systems, accurately predicting key properties such as lattice constants, bulk modulus, moiré reconstruction, phonon spectra, and thermal conductivities. The scalability of this method enables accurate simulations of TMD heterostructures with large-scale moiré superlattices, making it a transformative tool for the design of TMD-based thermal metamaterials and devices, bridging the gap between accuracy and computational efficiency.

physics.comp-ph↗

arXiv2025

Interface phonon modes governing the ideal limit of thermal transport across diamond/cubic boron nitride interfaces

Understanding the ideal limit of interfacial thermal conductance (ITC) across semiconductor heterointerfaces is crucial for optimizing heat dissipation in practical applications. By employing a highly accurate and efficient machine-learned potential trained herein, we perform extensive non-equilibrium molecular dynamics simulations to investigate the ITC of diamond/cubic boron nitride ($c$BN) interfaces. The ideal diamond/$c$BN interface exhibits an unprecedented ITC of 11.0 $\pm$ 0.1 GW m$^{-2}$ K$^{-1}$, setting a new upper bound for heterostructure interfaces. This exceptional conductance originates from extended phonon modes due to acoustic matching and localized C-atom modes that propagate through B-C bonds. However, atomic diffusion across the ideal interface creates mixing layers that disrupt these characteristic phonon modes, substantially suppressing the thermal transport from its ideal limit. Our findings reveal how interface phonon modes govern thermal transport across diamond/$c$BN interfaces, providing insights for thermal management in semiconductor devices.

cond-mat.mtrl-sci↗

arXiv2025

Optimizing thermoelectric performance of graphene antidot lattices via quantum transport and machine-learning molecular dynamics simulations

Thermoelectric materials, which can convert waste heat to electricity or be utilized as solid-state coolers, hold promise for sustainable energy applications. However, optimizing thermoelectric performance remains a significant challenge due to the complex interplay between electronic and thermal transport properties. In this work, we systematically optimize $ZT$ in graphene antidot lattices (GALs), nanostructured graphene sheets with periodic nanopores characterized by two geometric parameters: the hexagonal unit cell side length $L$ and the antidot radius $R$. The lattice thermal conductivity is determined through machine-learned potential-driven molecular dynamics (MD) simulations, while electronic transport properties are computed using linear-scaling quantum transport in combination with MD trajectories based on a bond-length-dependent tight-binding model. This method is able to account for electron-phonon scattering, allowing access to diffusive transport in large-scale systems, overcoming limitations of previous methods based on nonequilibrium Green function formalism. Our results show that the introduction of the antidots effectively decouples lattice and electronic transport and lead to a favorable and significant violation of the Wiedemann-Franz law. We find that optimal $ZT$ values occur in GALs with intermediate $L$ and $R$, closely correlated with peak power factor values. Notably, thermoelectric performance peaks near room temperature, with maximal $ZT$ values approaching 2, highlighting GALs as promising candidates for high-performance thermoelectric energy conversion.

cond-mat.mes-hall↗

arXiv2025

Improving robustness and training efficiency of machine-learned potentials by incorporating short-range empirical potentials

Machine learning force fields (MLFFs) are powerful tools for materials modeling, but their performance is often limited by training dataset quality, particularly the lack of rare event configurations. This limitation undermines their accuracy and robustness in long-time and large-scale molecular dynamics simulations. In this work, we present a hybrid MLFF framework that integrates an empirical short-range repulsive potential and demonstrates improved robustness and training efficiency. Using solid electrolyte Li$_7$La$_3$Zr$_2$O$_{12}$ (LLZO) as a model system, we show that purely data-driven MLFFs fail to prevent unphysical atomistic clustering in extended simulations due to inadequate short-range repulsion. In contrast, the hybrid force field eliminates these artifacts, enabling stable long-time simulations, which are critical for studying various properties of LLZO. The hybrid framework also reduces the need for extensive active learning and performs well with just 25 training configurations. By combining physics-driven constraints with data-driven flexibility, this approach is compatible with most existing MLFF architectures and establishes a universal paradigm for developing robust, training-efficient force fields for complex material systems.

cond-mat.mtrl-sci↗

arXiv2025

Structural and transport properties of LiTFSI/G3 electrolyte with machine-learned molecular dynamics

The lithium bis(trifluoromethylsulfonyl)azanide-triglyme electrolyte plays a critical role in the performance of lithium-ion batteries. However, its solvation structure and transport properties at the atomic scale remain incompletely understood. In this study, we develop an efficient and accurate neuroevolution potential (NEP) model by integrating bootstrap and active learning strategies. Using machine-learned NEP-driven molecular dynamics simulations, we explore the structural and diffusion properties of LiTFSI/G3 across a wide range of the solute-to-solvent ratios, systematically analyzing electrolyte density, ion coordination, viscosity, and lithium self-diffusion. The computed densities show excellent agreement with experimental data, and pair correlation analysis reveals significant interactions between lithium ions and surrounding oxygen atoms, which strongly impacts Li$^+$ mobility. Viscosity and diffusion calculations further demonstrate that increasing LiTFSI concentration enhances Li-O interactions, resulting in higher viscosity and reduced lithium diffusion. Additionally, machine learning-based path integral molecular dynamics (PIMD) simulations confirm the negligible impact of quantum effects on Li$^+$ transport. The electrolyte-specific protocol developed in this work provides a systematic framework for constructing high-fidelity machine learning potentials for complex systems.

cond-mat.mtrl-sci↗

arXiv2025

Probing the ideal limit of interfacial thermal conductance in two-dimensional van der Waals heterostructures

Probing the ideal limit of interfacial thermal conductance (ITC) in two-dimensional (2D) heterointerfaces is of paramount importance for assessing heat dissipation in 2D-based nanoelectronics. Using graphene/hexagonal boron nitride (Gr/$h$-BN), a structurally isomorphous heterostructure with minimal mass contrast, as a prototype, we develop an accurate yet highly efficient machine-learned potential (MLP) model, which drives nonequilibrium molecular dynamics (NEMD) simulations on a realistically large system with over 300,000 atoms, enabling us to report the ideal limit range of ITC for 2D heterostructures at room temperature. We further unveil an intriguing stacking-sequence-dependent ITC hierarchy in the Gr/$h$-BN heterostructure, which can be connected to moiré patterns and is likely universal in van der Waals layered materials. The underlying atomic-level mechanisms can be succinctly summarized as energy-favorable stacking sequences facilitating out-of-plane phonon energy transmission. This work demonstrates that MLP-driven MD simulations can serve as a new paradigm for probing and understanding thermal transport mechanisms in 2D heterostructures and other layered materials.

physics.comp-ph↗

arXiv2025

Thermal transport of amorphous hafnia across the glass transition

Heat transport in glasses across a wide range of temperature is vital for applications in gate dielectrics and heat insulator. However, it remains poorly understood due to the challenges of modeling vibrational anharmonicity below glass transition temperature and capturing configurational dynamics across the transition. Interestingly, recent calculations predicted that amorphous hafnia (a-HfO$_2$) exhibits an unusual drop in thermal conductivity ($κ$) with temperature, contrasting with the typical rise or saturation observed in glasses upon heating. Using molecular dynamics simulations with a machine-learning-based neuroevolution potential, we compute the vibrational properties and $κ$ of a-HfO$_2$ from 50~K to 2000~K. At low temperatures, we employ the Wigner transport equation to incorporate both anharmonicity and Bose-Einstein statistics of atomic vibration in the calculation of $κ$. At above 1200~K, atomic diffusion breaks down the Lorentzian-shaped quasiparticle picture and makes the lattice-dynamics treatment invalid. We thus use molecular dynamics with the Green-Kubo method to capture convective heat transport in a-HfO$_2$ near the glass transition at around 1500~K. Additionally, by extending the Wigner transport equation to supercooled liquid states, we find the crucial role of low-frequency modes in facilitating heat convection. The computed $κ$ of a-HfO$_2$, based on both Green-Kubo and Wigner transport theories, reveals a continuous increase with temperature up to 2000~K.

cond-mat.mtrl-sci↗

arXiv2025

Advances in modeling complex materials: The rise of neuroevolution potentials

Interatomic potentials are essential for driving molecular dynamics (MD) simulations, directly impacting the reliability of predictions regarding the physical and chemical properties of materials. In recent years, machine-learned potentials (MLPs), trained against first-principles calculations, have become a new paradigm in materials modeling as they provide a desirable balance between accuracy and computational cost. The neuroevolution potential (NEP) approach, implemented in the open-source GPUMD software, has emerged as a promising machine-learned potential, exhibiting impressive accuracy and exceptional computational efficiency. This review provides a comprehensive discussion on the methodological and practical aspects of the NEP approach, along with a detailed comparison with other representative state-of-the-art MLP approaches in terms of training accuracy, property prediction, and computational efficiency. We also demonstrate the application of the NEP approach to perform accurate and efficient MD simulations, addressing complex challenges that traditional force fields typically can not tackle. Key examples include structural properties of liquid and amorphous materials, chemical order in complex alloy systems, phase transitions, surface reconstruction, material growth, primary radiation damage, fracture in two-dimensional materials, nanoscale tribology, and mechanical behavior of compositionally complex alloys under various mechanical loadings. This review concludes with a summary and perspectives on future extensions to further advance this rapidly evolving field.

cond-mat.mtrl-sci↗

arXiv2024

Lattice distortion leads to glassy thermal transport in crystalline Cs$_3$Bi$_2$I$_6$Cl$_3$

The glassy thermal conductivities observed in crystalline inorganic perovskites such as Cs$_3$Bi$_2$I$_6$Cl$_3$ is perplexing and lacking theoretical explanations. Here, we first experimentally measure such its thermal transport behavior from 20~K to 300~K, after synthesizing Cs$_3$Bi$_2$I$_6$Cl$_3$ single crystals. Using path-integral molecular dynamics simulations driven by machine learning potentials, we reveal that Cs$_3$Bi$_2$I$_6$Cl$_3$ has large lattice distortions at low temperatures, which may be related to the large atomic size mismatch. Employing the Wigner formulation of thermal transport, we reproduce the experimental thermal conductivities based on lattice-distorted structures. This study thus provides a framework for predicting and understanding glassy thermal transport in materials with strong lattice disorder.

cond-mat.mtrl-sci↗

arXiv2024

Density dependence of thermal conductivity in nanoporous and amorphous carbon with machine-learned molecular dynamics

Disordered forms of carbon are an important class of materials for applications such as thermal management. However, a comprehensive theoretical understanding of the structural dependence of thermal transport and the underlying microscopic mechanisms is lacking. Here we study the structure-dependent thermal conductivity of disordered carbon by employing molecular dynamics (MD) simulations driven by a machine-learned interatomic potential based on the efficient neuroevolution potential approach. Using large-scale MD simulations, we generate realistic nanoporous carbon (NP-C) samples with density varying from $0.3$ to $1.5$ g cm$^{-3}$ dominated by sp$^2$ motifs, and amorphous carbon (a-C) samples with density varying from $1.5$ to $3.5$ g cm$^{-3}$ exhibiting mixed sp$^2$ and sp$^3$ motifs. Structural properties including short- and medium-range order are characterized by atomic coordination, pair correlation function, angular distribution function and structure factor. Using the homogeneous nonequilibrium MD method and the associated quantum-statistical correction scheme, we predict a linear and a superlinear density dependence of thermal conductivity for NP-C and a-C, respectively, in good agreement with relevant experiments. The distinct density dependences are attributed to the different impacts of the sp$^2$ and sp$^3$ motifs on the spectral heat capacity, vibrational mean free paths and group velocity. We additionally highlight the significant role of structural order in regulating the thermal conductivity of disordered carbon.

cond-mat.mtrl-sci↗

arXiv2024

NEP-MB-pol: A unified machine-learned framework for fast and accurate prediction of water's thermodynamic and transport properties

Water's unique hydrogen-bonding network and anomalous properties pose significant challenges for accurately modeling its structural, thermodynamic, and transport behavior across varied conditions. Although machine-learned potentials have advanced the prediction of individual properties, a unified computational framework capable of simultaneously capturing water's complex and subtle properties with high accuracy has remained elusive. Here, we address this challenge by introducing NEP-MB-pol, a highly accurate and efficient neuroevolution potential (NEP) trained on extensive many-body polarization (MB-pol) reference data approaching coupled-cluster-level accuracy, combined with path-integral molecular dynamics and quantum-correction techniques to incorporate nuclear quantum effects. This NEP-MB-pol framework reproduces experimentally measured structural, thermodynamic, and transport properties of water across a broad temperature range, achieving simultaneous, fast, and accurate prediction of self-diffusion coefficient, viscosity, and thermal conductivity. Our approach provides a unified and robust tool for exploring thermodynamic and transport properties of water under diverse conditions, with significant potential for broader applications across research fields.

physics.chem-ph↗