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Zhi Jin

Publications and source records attributed to Zhi Jin.

At least 163 records · Page 9Linked to original sources
arXiv2023

Hot or Cold? Adaptive Temperature Sampling for Code Generation with Large Language Models

Recently, Large Language Models (LLMs) have shown impressive abilities in code generation. However, existing LLMs' decoding strategies are designed for Natural Language (NL) generation, overlooking the differences between NL and programming languages (PL). Due to this oversight, a better decoding strategy for code generation remains an open question. In this paper, we conduct the first systematic study to explore a decoding strategy specialized in code generation. With an analysis of loss distributions of code tokens, we find that code tokens can be divided into two categories: challenging tokens that are difficult to predict and confident tokens that can be easily inferred. Among them, the challenging tokens mainly appear at the beginning of a code block. Inspired by the above findings, we propose a simple yet effective method: Adaptive Temperature (AdapT) sampling, which dynamically adjusts the temperature coefficient when decoding different tokens. We apply a larger temperature when sampling for challenging tokens, allowing LLMs to explore diverse choices. We employ a smaller temperature for confident tokens avoiding the influence of tail randomness noises. We apply AdapT sampling to LLMs with different sizes and conduct evaluations on two popular datasets. Results show that AdapT sampling significantly outperforms state-of-the-art decoding strategy.

cs.SE↗
arXiv2023

TACO: Topics in Algorithmic COde generation dataset

We introduce TACO, an open-source, large-scale code generation dataset, with a focus on the optics of algorithms, designed to provide a more challenging training dataset and evaluation benchmark in the field of code generation models. TACO includes competition-level programming questions that are more challenging, to enhance or evaluate problem understanding and reasoning abilities in real-world programming scenarios. There are 25433 and 1000 coding problems in training and test set, as well as up to 1.55 million diverse solution answers. Moreover, each TACO problem includes several fine-grained labels such as task topics, algorithms, programming skills, and difficulty levels, providing a more precise reference for the training and evaluation of code generation models. The dataset and evaluation scripts are available on Hugging Face Hub (https://huggingface.co/datasets/BAAI/TACO) and Github (https://github.com/FlagOpen/TACO).

cs.AI↗
arXiv2023

ContraNovo: A Contrastive Learning Approach to Enhance De Novo Peptide Sequencing

De novo peptide sequencing from mass spectrometry (MS) data is a critical task in proteomics research. Traditional de novo algorithms have encountered a bottleneck in accuracy due to the inherent complexity of proteomics data. While deep learning-based methods have shown progress, they reduce the problem to a translation task, potentially overlooking critical nuances between spectra and peptides. In our research, we present ContraNovo, a pioneering algorithm that leverages contrastive learning to extract the relationship between spectra and peptides and incorporates the mass information into peptide decoding, aiming to address these intricacies more efficiently. Through rigorous evaluations on two benchmark datasets, ContraNovo consistently outshines contemporary state-of-the-art solutions, underscoring its promising potential in enhancing de novo peptide sequencing. The source code is available at https://github.com/BEAM-Labs/ContraNovo.

q-bio.QM↗
arXiv2023

Enhancing the Spatial Awareness Capability of Multi-Modal Large Language Model

The Multi-Modal Large Language Model (MLLM) refers to an extension of the Large Language Model (LLM) equipped with the capability to receive and infer multi-modal data. Spatial awareness stands as one of the crucial abilities of MLLM, encompassing diverse skills related to understanding spatial relationships among objects and between objects and the scene area. Industries such as autonomous driving, smart healthcare, robotics, virtual, and augmented reality heavily demand MLLM's spatial awareness capabilities. However, there exists a noticeable gap between the current spatial awareness capabilities of MLLM and the requirements set by human needs. To address this issue, this paper proposes using more precise spatial position information between objects to guide MLLM in providing more accurate responses to user-related inquiries. Specifically, for a particular multi-modal task, we utilize algorithms for acquiring geometric spatial information and scene graphs to obtain relevant geometric spatial information and scene details of objects involved in the query. Subsequently, based on this information, we direct MLLM to address spatial awareness-related queries posed by the user. Extensive experiments were conducted in benchmarks such as MME, MM-Vet, and other multi-modal large language models. The experimental results thoroughly confirm the efficacy of the proposed method in enhancing the spatial awareness tasks and associated tasks of MLLM.

cs.AI↗
arXiv2023

ChatCoder: Chat-based Refine Requirement Improves LLMs' Code Generation

Large language models have shown good performances in generating code to meet human requirements. However, human requirements expressed in natural languages can be vague, incomplete, and ambiguous, leading large language models to misunderstand human requirements and make mistakes. Worse, it is difficult for a human user to refine the requirement. To help human users refine their requirements and improve large language models' code generation performances, we propose ChatCoder: a method to refine the requirements via chatting with large language models. We design a chat scheme in which the large language models will guide the human users to refine their expression of requirements to be more precise, unambiguous, and complete than before. Experiments show that ChatCoder has improved existing large language models' performance by a large margin. Besides, ChatCoder has the advantage over refine-based methods and LLMs fine-tuned via human response.

cs.SE↗
arXiv2023

PlugMed: Improving Specificity in Patient-Centered Medical Dialogue Generation using In-Context Learning

The patient-centered medical dialogue systems strive to offer diagnostic interpretation services to users who are less knowledgeable about medical knowledge, through emphasizing the importance of providing responses specific to the patients. It is difficult for the large language models (LLMs) to guarantee the specificity of responses in spite of its promising performance even in some tasks in medical field. Inspired by in-context learning, we propose PlugMed, a Plug-and-Play Medical Dialogue System, for addressing this challenge. PlugMed is equipped with two modules, the prompt generation (PG) module and the response ranking (RR) module, to enhances LLMs' dialogue strategies for improving the specificity of the dialogue. The PG module is designed to stimulate the imitative ability of LLMs by providing them with real dialogues from similar patients as prompts. The RR module incorporates fine-tuned small model as response filter to enable the selection of appropriate responses generated by LLMs. Furthermore, we introduce a new evaluation method based on matching both user's intent and high-frequency medical term to effectively assess the specificity of the responses. We conduct experimental evaluations on three medical dialogue datasets, and the results, including both automatic and human evaluation, demonstrate the effectiveness of our approach.

cs.CL↗
arXiv2023

Large Language Model-Aware In-Context Learning for Code Generation

Large language models (LLMs) have shown impressive in-context learning (ICL) ability in code generation. LLMs take a prompt consisting of requirement-code examples and a new requirement as input, and output new programs. Existing studies have found that ICL is highly dominated by the examples and thus arises research on example selection. However, existing approaches randomly select examples or only consider the textual similarity of requirements to retrieve, leading to sub-optimal performance. In this paper, we propose a novel learning-based selection approach named LAIL (LLM-Aware In-context Learning) for code generation. Given a candidate example, we exploit LLMs themselves to estimate it by considering the generation probabilities of ground-truth programs given a requirement and the example. We then label candidate examples as positive or negative through the probability feedback. Based on the labeled data, we import a contrastive learning objective to train an effective retriever that acquires the preference of LLMs in code generation. We apply LAIL to three LLMs and evaluate it on three representative datasets (e.g., MBJP, MBPP, and MBCPP). LATA outperforms the state-of-the-art baselines by 11.58%, 6.89%, and 5.07% on CodeGen, and 4.38%, 2.85%, and 2.74% on GPT-3.5 in terms of Pass@1, respectively.

cs.SE↗
arXiv2023

Dynamic Implicit Image Function for Efficient Arbitrary-Scale Image Representation

Recent years have witnessed the remarkable success of implicit neural representation methods. The recent work Local Implicit Image Function (LIIF) has achieved satisfactory performance for continuous image representation, where pixel values are inferred from a neural network in a continuous spatial domain. However, the computational cost of such implicit arbitrary-scale super-resolution (SR) methods increases rapidly as the scale factor increases, which makes arbitrary-scale SR time-consuming. In this paper, we propose Dynamic Implicit Image Function (DIIF), which is a fast and efficient method to represent images with arbitrary resolution. Instead of taking an image coordinate and the nearest 2D deep features as inputs to predict its pixel value, we propose a coordinate grouping and slicing strategy, which enables the neural network to perform decoding from coordinate slices to pixel value slices. We further propose a Coarse-to-Fine Multilayer Perceptron (C2F-MLP) to perform decoding with dynamic coordinate slicing, where the number of coordinates in each slice varies as the scale factor varies. With dynamic coordinate slicing, DIIF significantly reduces the computational cost when encountering arbitrary-scale SR. Experimental results demonstrate that DIIF can be integrated with implicit arbitrary-scale SR methods and achieves SOTA SR performance with significantly superior computational efficiency, thereby opening a path for real-time arbitrary-scale image representation. Our code can be found at https://github.com/HeZongyao/DIIF.

cs.CV↗
arXiv2023

ToolCoder: Teach Code Generation Models to use API search tools

Automatically generating source code from natural language descriptions has been a growing field of research in recent years. However, current large-scale code generation models often encounter difficulties when selecting appropriate APIs for specific contexts. These models may generate APIs that do not meet requirements or refer to non-existent APIs in third-party libraries, especially for lesser-known or private libraries. Inspired by the process of human developers using tools to search APIs, we propose ToolCoder, a novel approach that integrates API search tools with existing models to assist in code generation and API selection. To teach our model to use tools, we introduce an automated data annotation method using ChatGPT to add tool usage information into the source code data and fine-tune code generation models. During inference, we integrate API search tools into the generation process so that our model can automatically use the search tool to get suggestions when selecting an API. Our experimental results demonstrate that ToolCoder exhibits excellent performance and generalization across five public and private library code generation benchmarks, with at least 6.21\% improvement on average pass@1 metrics and 9.64\% improvement on average pass@10 metrics compared to state-of-the-art methods. Furthermore, we show that our relatively small ToolCoder model is comparable to one of the current best models, GPT-3.5, highlighting the potential of incorporating programming tools into the code generation process.

cs.SE↗
arXiv2023

Self-Edit: Fault-Aware Code Editor for Code Generation

Large language models (LLMs) have demonstrated an impressive ability to generate codes on competitive programming tasks. However, with limited sample numbers, LLMs still suffer from poor accuracy. Inspired by the process of human programming, we propose a generate-and-edit approach named Self-Edit that utilizes execution results of the generated code from LLMs to improve the code quality on the competitive programming task. We execute the generated code on the example test case provided in the question and wrap execution results into a supplementary comment. Utilizing this comment as guidance, our fault-aware code editor is employed to correct errors in the generated code. We perform extensive evaluations across two competitive programming datasets with nine different LLMs. Compared to directly generating from LLMs, our approach can improve the average of pass@1 by 89\% on APPS-dev, 31\% on APPS-test, and 48\% on HumanEval over nine popular code generation LLMs with parameter sizes ranging from 110M to 175B. Compared to other post-processing methods, our method demonstrates superior accuracy and efficiency.

cs.SE↗
arXiv2023

SkCoder: A Sketch-based Approach for Automatic Code Generation

Recently, deep learning techniques have shown great success in automatic code generation. Inspired by the code reuse, some researchers propose copy-based approaches that can copy the content from similar code snippets to obtain better performance. Practically, human developers recognize the content in the similar code that is relevant to their needs, which can be viewed as a code sketch. The sketch is further edited to the desired code. However, existing copy-based approaches ignore the code sketches and tend to repeat the similar code without necessary modifications, which leads to generating wrong results. In this paper, we propose a sketch-based code generation approach named SkCoder to mimic developers' code reuse behavior. Given a natural language requirement, SkCoder retrieves a similar code snippet, extracts relevant parts as a code sketch, and edits the sketch into the desired code. Our motivations are that the extracted sketch provides a well-formed pattern for telling models "how to write". The post-editing further adds requirement-specific details to the sketch and outputs the complete code. We conduct experiments on two public datasets and a new dataset collected by this work. We compare our approach to 20 baselines using 5 widely used metrics. Experimental results show that (1) SkCoder can generate more correct programs, and outperforms the state-of-the-art - CodeT5-base by 30.30%, 35.39%, and 29.62% on three datasets. (2) Our approach is effective to multiple code generation models and improves them by up to 120.1% in Pass@1. (3) We investigate three plausible code sketches and discuss the importance of sketches. (4) We manually evaluate the generated code and prove the superiority of our SkCoder in three aspects.

cs.SE↗
arXiv2023

AceCoder: Utilizing Existing Code to Enhance Code Generation

Large Language Models (LLMs) have shown great success in code generation. LLMs take as the input a prompt and output the code. A key question is how to make prompts (i.e., Prompting Techniques). Existing prompting techniques are designed for natural language generation and have low accuracy in code generation. In this paper, we propose a new prompting technique named AceCoder. Our motivation is that code generation meets two unique challenges (i.e., requirement understanding and code implementation). AceCoder contains two novel mechanisms (i.e., guided code generation and example retrieval) to solve these challenges. (1) Guided code generation asks LLMs first to analyze requirements and output an intermediate preliminary (e.g., test cases). The preliminary is used to clarify requirements and tell LLMs "what to write". (2) Example retrieval selects similar programs as examples in prompts, which provide lots of relevant content (e.g., algorithms, APIs) and teach LLMs "how to write". We apply AceCoder to three LLMs (e.g., Codex) and evaluate it on three public benchmarks using the Pass@k. Results show that AceCoder can significantly improve the performance of LLMs on code generation. (1) In terms of Pass@1, AceCoder outperforms the state-of-the-art baseline by up to 56.4% in MBPP, 70.7% in MBJP, and 88.4% in MBJSP. (2) AceCoder is effective in LLMs with different sizes (i.e., 6B to 13B) and different languages (i.e., Python, Java, and JavaScript). (3) Human evaluation shows human developers prefer programs from AceCoder.

cs.SE↗
arXiv2023

Structured Chain-of-Thought Prompting for Code Generation

Large Language Models (LLMs) (e.g., ChatGPT) have shown impressive performance in code generation. LLMs take prompts as inputs, and Chain-of-Thought (CoT) prompting is the state-of-the-art prompting technique. CoT prompting asks LLMs first to generate CoTs (i.e., intermediate natural language reasoning steps) and then output the code. However, CoT prompting is designed for natural language generation and has low accuracy in code generation. In this paper, we propose Structured CoTs (SCoTs) and present a novel prompting technique for code generation, named SCoT prompting. Our motivation is source code contains rich structural information and any code can be composed of three program structures (i.e., sequence, branch, and loop structures). Intuitively, structured intermediate reasoning steps make for structured source code. Thus, we ask LLMs to use program structures to build CoTs, obtaining SCoTs. Then, LLMs generate the final code based on SCoTs. Compared to CoT prompting, SCoT prompting explicitly constrains LLMs to think about how to solve requirements from the view of source code and further the performance of LLMs in code generation. We apply SCoT prompting to two LLMs (i.e., ChatGPT and Codex) and evaluate it on three benchmarks (i.e., HumanEval, MBPP, and MBCPP). (1) SCoT prompting outperforms the state-of-the-art baseline - CoT prompting by up to 13.79% in Pass@1. (2) Human evaluation shows human developers prefer programs from SCoT prompting. (3) SCoT prompting is robust to examples and achieves substantial improvements.

cs.SE↗
arXiv2023

ZC3: Zero-Shot Cross-Language Code Clone Detection

Developers introduce code clones to improve programming productivity. Many existing studies have achieved impressive performance in monolingual code clone detection. However, during software development, more and more developers write semantically equivalent programs with different languages to support different platforms and help developers translate projects from one language to another. Considering that collecting cross-language parallel data, especially for low-resource languages, is expensive and time-consuming, how designing an effective cross-language model that does not rely on any parallel data is a significant problem. In this paper, we propose a novel method named ZC3 for Zero-shot Cross-language Code Clone detection. ZC3 designs the contrastive snippet prediction to form an isomorphic representation space among different programming languages. Based on this, ZC3 exploits domain-aware learning and cycle consistency learning to further constrain the model to generate representations that are aligned among different languages meanwhile are diacritical for different types of clones. To evaluate our approach, we conduct extensive experiments on four representative cross-language clone detection datasets. Experimental results show that ZC3 outperforms the state-of-the-art baselines by 67.12%, 51.39%, 14.85%, and 53.01% on the MAP score, respectively. We further investigate the representational distribution of different languages and discuss the effectiveness of our method.

cs.SE↗
arXiv2023

EditSum: A Retrieve-and-Edit Framework for Source Code Summarization

Existing studies show that code summaries help developers understand and maintain source code. Unfortunately, these summaries are often missing or outdated in software projects. Code summarization aims to generate natural language descriptions automatically for source code. Code summaries are highly structured and have repetitive patterns. Besides the patternized words, a code summary also contains important keywords, which are the key to reflecting the functionality of the code. However, the state-of-the-art approaches perform poorly on predicting the keywords, which leads to the generated summaries suffering a loss in informativeness. To alleviate this problem, this paper proposes a novel retrieve-and-edit approach named EditSum for code summarization. Specifically, EditSum first retrieves a similar code snippet from a pre-defined corpus and treats its summary as a prototype summary to learn the pattern. Then, EditSum edits the prototype automatically to combine the pattern in the prototype with the semantic information of input code. Our motivation is that the retrieved prototype provides a good start-point for post-generation because the summaries of similar code snippets often have the same pattern. The post-editing process further reuses the patternized words in the prototype and generates keywords based on the semantic information of input code. We conduct experiments on a large-scale Java corpus and experimental results demonstrate that EditSum outperforms the state-of-the-art approaches by a substantial margin. The human evaluation also proves the summaries generated by EditSum are more informative and useful. We also verify that EditSum performs well on predicting the patternized words and keywords.

cs.SE↗
arXiv2023

CodeEditor: Learning to Edit Source Code with Pre-trained Models

Developers often perform repetitive code editing activities for various reasons (e.g., code refactoring) during software development. Pre-trained code editing models have achieved the state-of-the-art (SOTA) results. Pre-trained models are first pre-trained with pre-training tasks and fine-tuned with the code editing task. Existing pre-training tasks mainly are code infilling tasks (e.g., masked language modeling), which are derived from the natural language processing field and are not designed for automatic code editing. This paper proposes a novel pre-training task specialized in code editing and presents an effective pre-trained code editing model named CodeEditor. Our pre-training task further improves the performance and generalization ability of code editing models. Specifically, we collect lots of real-world code snippets as the ground truth and use a powerful generator to rewrite them into mutated versions. Then, we pre-train our CodeEditor to edit mutated versions into the corresponding ground truth, to learn edit patterns. We conduct experiments on four code editing datasets and evaluate the pre-trained CodeEditor in three settings. (1) In the fine-tuning setting, we train the pre-trained CodeEditor with four datasets and evaluate it on the test data. CodeEditor outperforms the SOTA baselines by 15%, 25.5%, and 9.4% and 26.6% on four datasets. (2) In the few-shot setting, we train the pre-trained CodeEditor with limited data and evaluate it on the test data. CodeEditor substantially performs better than all baselines. (3) In the zero-shot setting, CodeEditor correctly edits 1,113 programs while the SOTA baselines can not work.

cs.SE↗
arXiv2023

MB-TaylorFormer: Multi-branch Efficient Transformer Expanded by Taylor Formula for Image Dehazing

In recent years, Transformer networks are beginning to replace pure convolutional neural networks (CNNs) in the field of computer vision due to their global receptive field and adaptability to input. However, the quadratic computational complexity of softmax-attention limits the wide application in image dehazing task, especially for high-resolution images. To address this issue, we propose a new Transformer variant, which applies the Taylor expansion to approximate the softmax-attention and achieves linear computational complexity. A multi-scale attention refinement module is proposed as a complement to correct the error of the Taylor expansion. Furthermore, we introduce a multi-branch architecture with multi-scale patch embedding to the proposed Transformer, which embeds features by overlapping deformable convolution of different scales. The design of multi-scale patch embedding is based on three key ideas: 1) various sizes of the receptive field; 2) multi-level semantic information; 3) flexible shapes of the receptive field. Our model, named Multi-branch Transformer expanded by Taylor formula (MB-TaylorFormer), can embed coarse to fine features more flexibly at the patch embedding stage and capture long-distance pixel interactions with limited computational cost. Experimental results on several dehazing benchmarks show that MB-TaylorFormer achieves state-of-the-art (SOTA) performance with a light computational burden. The source code and pre-trained models are available at https://github.com/FVL2020/ICCV-2023-MB-TaylorFormer.

cs.CV↗
arXiv2023

STEAM: Simulating the InTeractive BEhavior of ProgrAMmers for Automatic Bug Fixing

Bug fixing holds significant importance in software development and maintenance. Recent research has made notable progress in exploring the potential of large language models (LLMs) for automatic bug fixing. However, existing studies often overlook the collaborative nature of bug resolution, treating it as a single-stage process. To overcome this limitation, we introduce a novel stage-wise framework named STEAM in this paper. The objective of STEAM is to simulate the interactive behavior of multiple programmers involved in various stages across the bug's life cycle. Taking inspiration from bug management practices, we decompose the bug fixing task into four distinct stages: bug reporting, bug diagnosis, patch generation, and patch verification. These stages are performed interactively by LLMs, aiming to imitate the collaborative abilities of programmers during the resolution of software bugs. By harnessing the collective contribution, STEAM effectively enhances the bug-fixing capabilities of LLMs. We implement STEAM by employing the powerful dialogue-based LLM -- ChatGPT. Our evaluation on the widely adopted bug-fixing benchmark demonstrates that STEAM has achieved a new state-of-the-art level of bug-fixing performance.

cs.SE↗