arXiv subjects

Zhichao Yan

Publications and source records attributed to Zhichao Yan.

11 recordsLinked to original sources

arXiv2026

A Large-Scale Chinese Knowledge Graph-Text Alignment Dataset for Benchmarking Knowledge-Grounded LLMs

Reliable evaluation of knowledge-grounded Large Language Models (LLMs) in Chinese requires resources that explicitly align Chinese-language text with verifiable Knowledge Graph (KG) facts. Yet existing Chinese benchmarks primarily assess general language understanding and offer limited support for structured reasoning under Chinese-specific linguistic phenomena. We introduce the Chinese Data-Text Pair (CDTP), a large-scale Chinese KG-text alignment dataset comprising more than 7 million aligned instances across four broad domains. Each instance pairs a Chinese-language text with one or more textually supported KG triples, totaling 15 million triples. A multi-stage construction pipeline combining alignment filtering, manual verification, and external evidence validation improves semantic consistency and factual reliability. CDTP supports Knowledge Graph Completion (KGC), Question Answering (QA), and Triple-to-Text Generation (T2T). Across all three tasks, the benchmark design accounts for Chinese-specific phenomena, including polysemy, word-segmentation ambiguity, and context-dependent entity interpretation, enabling the evaluation of structured reasoning, ambiguity-aware factual understanding, and knowledge-grounded generation. Experiments with diverse open-source and proprietary LLMs show that model scale alone does not guarantee reliable performance on these Chinese knowledge-intensive tasks, whereas supervised fine-tuning on CDTP consistently improves in-domain performance and out-of-distribution robustness. The publicly accessible dataset, code, and evaluation protocols provide a reusable resource for developing and evaluating knowledge-grounded LLMs in Chinese.

cs.CL↗

arXiv2026

Beyond Factual Accuracy: Evaluating Global Reasoning Integrity in RAG Systems with LogicScore

Current evaluation methods for Retrieval Augmented Generation (RAG) suffer from \textit{factual myopia}: they relentlessly emphasize factual accuracy yet neglect global logical integrity in long-form answer generation. This drives models to force unnatural connections, producing factually grounded yet logically incoherent responses with unaddressed gaps, ambiguous links, or redundant premises. To mitigate this, we present \textsc{LogicScore}, shifting from local, fact-by-fact assessment to rigorous global reasoning scrutiny. Grounded in Horn Rules, our approach integrates a backward verification mechanism to systematically evaluate three key reasoning dimensions: \textit{Completeness} (logically sound deduction), \textit{Essentiality} (non-redundancy), and \textit{Determinateness} (consistent answer entailment). Extensive experiments across three multi-hop QA datasets (HotpotQA, MusiQue, and 2WikiMultiHopQA) and over 20 LLMs (including GPT-5, Gemini-3-Pro, LLaMA3, and task-specific tuned models) reveal a critical capability gap: leading models often achieve high factual accuracy (e.g., 92.85\% precision for Gemini-3 Pro) but struggle with global reasoning quality (e.g., 35.11\% Essentiality for Gemini-3 Pro). Our work establishes a robust standard for logical evaluation, highlighting the need to prioritize reasoning coherence alongside factual grounding in LLM development.

cs.CL↗

arXiv2026

CAGE: Cognitive Attribution Graphs for Faithful Inline Citation Generation in Long-Form Question Answering

Long-form question answering increasingly relies on retrieved evidence to make LLM outputs verifiable, with inline citations tracing claims to source documents. However, existing systems often attach citations that are topically related but insufficient to support their claims. We identify attribution ambiguity as a structural challenge: end-to-end generation must implicitly resolve combinatorial claim--document assignments, obscuring evidential boundaries and increasing the risk of evidence-boundary overrun, where claims exceed cited support. To address this challenge, we propose CAGE (Cognitive Attribution Graphs for Citation Generation), a two-stage framework that introduces an explicit cognitive attribution map before answer generation. CAGE first trains a plug-and-play Cognitive Map Induction Model to construct answer-centered support subgraphs, aligning each semantic answer unit with supporting documents through explicit relations. A Structured Citation Reasoning Model then realizes these units as sentence-level claims with map-aligned citations. Experiments on ASQA, ELI5, and ExpertQA show that CAGE achieves state-of-the-art performance, demonstrating the effectiveness of attribution-space contraction and map-guided citation generation.

cs.CL↗

arXiv2026

Suppressed Rupture of Thin Metal Films via van der Waals Epitaxy

Ultrathin metal films exhibit liquid-like instabilities, rupturing via surface diffusion far below their melting points. This behavior constrains thermal budgets for advanced integrated circuits and emerging 2D-crystal devices. Here, we demonstrate that these instabilities can be fundamentally suppressed using graphene as a van der Waals (vdW) template. While conventional 20-nm-thick gold films break up into islands below 300 {\textdegree}C, templated films not only remain stable but also become structurally refined after annealing above 600 {\textdegree}C. This exceptional stability stems from a vdW-mediated crystallographic texture that reorganizes grain boundaries into a mechanically robust network. This mechanism significantly widens the processing window for nanoscale interconnects and enables high-temperature integration of metals with 2D-crystal technologies.

cond-mat.soft↗

arXiv2026

Cumulative Path-Level Semantic Reasoning for Inductive Knowledge Graph Completion

Conventional Knowledge Graph Completion (KGC) methods aim to infer missing information in incomplete Knowledge Graphs (KGs) by leveraging existing information, which struggle to perform effectively in scenarios involving emerging entities. Inductive KGC methods can handle the emerging entities and relations in KGs, offering greater dynamic adaptability. While existing inductive KGC methods have achieved some success, they also face challenges, such as susceptibility to noisy structural information during reasoning and difficulty in capturing long-range dependencies in reasoning paths. To address these challenges, this paper proposes the Cumulative Path-Level Semantic Reasoning for inductive knowledge graph completion (CPSR) framework, which simultaneously captures both the structural and semantic information of KGs to enhance the inductive KGC task. Specifically, the proposed CPSR employs a query-dependent masking module to adaptively mask noisy structural information while retaining important information closely related to the targets. Additionally, CPSR introduces a global semantic scoring module that evaluates both the individual contributions and the collective impact of nodes along the reasoning path within KGs. The experimental results demonstrate that CPSR achieves state-of-the-art performance.

cs.AI↗

arXiv2025

On the Influence of Shape, Texture and Color for Learning Semantic Segmentation

Recent research has investigated the shape and texture biases of pre-trained deep neural networks (DNNs) in image classification. Those works test how much a trained DNN relies on specific image cues like texture. The present study shifts the focus to understanding the cue influence during training, analyzing what DNNs can learn from shape, texture, and color cues in absence of the others; investigating their individual and combined influence on the learning success. We analyze these cue influences at multiple levels by decomposing datasets into cue-specific versions. Addressing semantic segmentation, we learn the given task from these reduced cue datasets, creating cue experts. Early fusion of cues is performed by constructing appropriate datasets. This is complemented by a late fusion of experts which allows us to study cue influence location-dependent on pixel level. Experiments on Cityscapes, PASCAL Context, and a synthetic CARLA dataset show that while no single cue dominates, the shape + color expert predominantly improves the prediction of small objects and border pixels. The cue performance order is consistent for the tested convolutional and transformer architecture, indicating similar cue extraction capabilities, although pre-trained transformers are said to be more biased towards shape than convolutional neural networks.

cs.CV↗

arXiv2025

Atomic Fact Decomposition Helps Attributed Question Answering

Attributed Question Answering (AQA) aims to provide both a trustworthy answer and a reliable attribution report for a given question. Retrieval is a widely adopted approach, including two general paradigms: Retrieval-Then-Read (RTR) and post-hoc retrieval. Recently, Large Language Models (LLMs) have shown remarkable proficiency, prompting growing interest in AQA among researchers. However, RTR-based AQA often suffers from irrelevant knowledge and rapidly changing information, even when LLMs are adopted, while post-hoc retrieval-based AQA struggles with comprehending long-form answers with complex logic, and precisely identifying the content needing revision and preserving the original intent. To tackle these problems, this paper proposes an Atomic fact decomposition-based Retrieval and Editing (ARE) framework, which decomposes the generated long-form answers into molecular clauses and atomic facts by the instruction-tuned LLMs. Notably, the instruction-tuned LLMs are fine-tuned using a well-constructed dataset, generated from large scale Knowledge Graphs (KGs). This process involves extracting one-hop neighbors from a given set of entities and transforming the result into coherent long-form text. Subsequently, ARE leverages a search engine to retrieve evidences related to atomic facts, inputting these evidences into an LLM-based verifier to determine whether the facts require expansion for re-retrieval or editing. Furthermore, the edited facts are backtracked into the original answer, with evidence aggregated based on the relationship between molecular clauses and atomic facts. Extensive evaluations demonstrate the superior performance of our proposed method over the state-of-the-arts on several datasets, with an additionally proposed new metric $Attr_{p}$ for evaluating the precision of evidence attribution.

cs.CL↗

arXiv2025

Prompting Large Language Models with Partial Knowledge for Answering Questions with Unseen Entities

Retrieval-Augmented Generation (RAG) shows impressive performance by supplementing and substituting parametric knowledge in Large Language Models (LLMs). Retrieved knowledge can be divided into three types: explicit answer evidence, implicit answer clue, and insufficient answer context which can be further categorized into totally irrelevant and partially relevant information. Effectively utilizing partially relevant knowledge remains a key challenge for RAG systems, especially in incomplete knowledge base retrieval. Contrary to the conventional view, we propose a new perspective: LLMs can be awakened via partially relevant knowledge already embedded in LLMs. To comprehensively investigate this phenomenon, the triplets located in the gold reasoning path and their variants are used to construct partially relevant knowledge by removing the path that contains the answer. We provide theoretical analysis of the awakening effect in LLMs and support our hypothesis with experiments on two Knowledge Graphs (KGs) Question Answering (QA) datasets. Furthermore, we present a new task, Unseen Entity KGQA, simulating real-world challenges where entity linking fails due to KG incompleteness. Our awakening-based approach demonstrates greater efficacy in practical applications, outperforms traditional methods that rely on embedding-based similarity which are prone to returning noisy information.

cs.CL↗

arXiv2025

$T^3$: Multi-level Tree-based Automatic Program Repair with Large Language Models

Automatic Program Repair (APR) is a core technology in software development and maintenance, with aims to enable automated defect repair with minimal human intervention. In recent years, the substantial advancements in Large Language Models (LLMs) and the Chain-of-Thought (CoT) techniques have significantly enhanced the reasoning capabilities of these models. However, due to the complex logic and multi-step reasoning ability needed, the application of CoT techniques in the APR domain remains insufficient. This study systematically evaluates the performance of several common CoT techniques in APR tasks and proposes an innovative framework $T^3$, which integrates the powerful reasoning capabilities of LLMs with tree search, effectively improving the precision of generating candidate repair solutions. Furthermore, $T^3$ provides valuable guidance for optimizing sample selection and repair strategies in APR tasks, establishing a robust framework for achieving efficient automated debugging.

cs.SE↗

arXiv2025

Aptamer-protein interaction prediction model based on transformer

Aptamers are single-stranded DNA/RNAs or short peptides with unique tertiary structures that selectively bind to specific targets. They have great potential in the detection and medical fields. Here, we present SelfTrans-Ensemble, a deep learning model that integrates sequence information models and structural information models to extract multi-scale features for predicting aptamer-protein interactions (APIs). The model employs two pre-trained models, ProtBert and RNA-FM, to encode protein and aptamer sequences, along with features generated from primary sequence and secondary structural information. To address the data imbalance in the aptamer dataset imbalance, we incorporated short RNA-protein interaction data in the training set. This resulted in a training accuracy of 98.9% and a test accuracy of 88.0%, demonstrating the model's effectiveness in accurately predicting APIs. Additionally, analysis using molecular simulation indicated that SelfTrans-Ensemble is sensitive to aptamer sequence mutations. We anticipate that SelfTrans-Ensemble can offer a more efficient and rapid process for aptamer screening.

q-bio.BM↗

arXiv2012

Perfect NOT transformation and conjugate transformation

The perfect NOT transformation, probabilistic perfect NOT transformation and conjugate transformation are studied. Perfect NOT transformation criteria on a quantum state set $S$ of a qubit are obtained. Two necessary and sufficient conditions for realizing a perfect NOT transformation on $S$ are derived. When these conditions are not satisfied we discuss a probabilistic perfect NOT transformation (gate). We construct a probabilistic perfect NOT machine (gate) by a general unitary-reduction operation. With a postselection of the measurement outcomes, the probabilistic NOT gate yields perfectly complements of the input states. We prove that one can realize probabilistically the NOT gate of the input states secretly chosen from a certain set $S=\{|Ψ_1>, |Ψ_2>,..., |Ψ_n>\}$ if and only if $|Ψ_1>, |Ψ_2>,...,$ and $|Ψ_n>$ are linearly independent. We also generalize the probabilistic NOT transformation to the conjugate transformation in the multi-level quantum system. The lower bound of the best possible efficiencies attained by a probabilistic perfect conjugate transformation are obtained.

quant-ph↗