Searcharxiv⌕ Search

arXiv subjects

Zhiliang Xu

Publications and source records attributed to Zhiliang Xu.

21 records · Page 2Linked to original sources

Three-dimensional Multiscale Model of Deformable Platelets Adhesion to Vessel Wall in Blood Flow

When a blood vessel ruptures or gets inflamed, the human body responds by rapidly forming a clot to restrict the loss of blood. Platelets aggregation at the injury site of the blood vessel occurring via platelet-platelet adhesion, tethering and rolling on the injured endothelium is a critical initial step in blood clot formation. A novel three-dimensional multiscale model is introduced and used in this paper to simulate receptor-mediated adhesion of deformable platelets at the site of vascular injury under different shear rates of blood flow. The novelty of the model is based on a new approach of coupling submodels at three biological scales crucial for the early clot formation: novel hybrid cell membrane submodel to represent physiological elastic properties of a platelet, stochastic receptor-ligand binding submodel to describe cell adhesion kinetics and Lattice Boltzmann submodel for simulating blood flow. The model implementation on the GPUs cluster significantly improved simulation performance. Predictive model simulations revealed that platelet deformation, interactions between platelets in the vicinity of the vessel wall as well as the number of functional GPIbα platelet receptors played significant roles in the platelet adhesion to the injury site. Variation of the number of functional GPIbα platelet receptors as well as changes of platelet stiffness can represent effects of specific drugs reducing or enhancing platelet activity. Therefore, predictive simulations can improve the search for new drug targets and help to make treatment of thrombosis patient specific.

q-bio.TO↗

Divergence-Free WENO Reconstruction-Based Finite Volume Scheme for Solving Ideal MHD Equations on Triangular Meshes

In this paper, we introduce a high-order accurate constrained transport type finite volume method to solve ideal magnetohydrodynamic equations on two-dimensional triangular meshes. A new divergence-free WENO-based reconstruction method is developed to maintain exactly divergence-free evolution of the numerical magnetic field. A new weighted flux interpolation approach is also developed to compute the z-component of the electric field at vertices of grid cells. We also present numerical examples to demonstrate the accuracy and robustness of the proposed scheme.

physics.comp-ph↗

Efficient Implementation of ADER Schemes for Euler and Magnetohydrodynamical Flows on Structured Meshes -- Comparison with Runge-Kutta Methods

ADER (Arbitrary DERivative in space and time) methods for the time-evolution of hyperbolic conservation laws have recently generated a fair bit of interest. The ADER time update can be carried out in a single step, which is desirable in many applications. However, prior papers have focused on the theory while downplaying implementation details. The purpose of the present paper is to make ADER schemes accessible by providing two useful formulations of the method as well as their implementation details on three-dimensional structured meshes. We therefore provide a detailed formulation of ADER schemes for conservation laws with non-stiff source terms in nodal as well as modal space along with useful implementation-related detail. We also provide details for the efficient use of ADER schemes in obtaining the numerical flux for conservation laws as well as electric fields for divergence-free magnetohydrodynamics. An efficient WENO-based strategy for obtaining zone-averaged magnetic fields from face-centered magnetic fields in MHD is also presented. The schemes catalogued here have been implemented in the first author's RIEMANN code. The speed of ADER schemes is shown to be almost twice as fast as that of strong stability preserving Runge-Kutta time stepping schemes for all the orders of accuracy that we tested.

physics.comp-ph↗