arXiv subjects

Zhiming Cui

Publications and source records attributed to Zhiming Cui.

At least 19 recordsLinked to original sources

arXiv2026

Taming foundation model with invariance-oriented pre-training for broad-spectrum EEG analysis across signal-level, brain-state, and brain-health tasks

Electroencephalography (EEG) is a widely used window into human brain function, but most EEG models remain tied to a one-dataset-one-model supervised paradigm. Recent EEG foundation models offer a route toward reusable representations, but most remain reconstruction-centered, assuming that EEG content predictable from local context is necessarily transferable neural information. Here we present INCEPT, an invariance-oriented EEG foundation model trained on over 11,000 hours of unlabelled clinical EEG. Rather than prioritizing signal recovery alone, INCEPT learns representation-level stability across correlated EEG observations, separating stable neural structure and essential subject-sensitive information from the nuisance variability that dominates scalp recordings while preserving subject-, state- and condition-discriminative information. We evaluate INCEPT on a broad-spectrum benchmark of ten datasets spanning three levels of post-acquisition EEG analysis: signal-level assessment, brain-state decoding, and brain-health evaluation. INCEPT ranks first among recent EEG foundation models on 26 of 30 linear-probing metrics and 24 of 30 fine-tuning metrics, and also surpasses strong task-specific specialist encoders across diverse downstream settings. Objective ablations and representation analyses further show that invariance-oriented pre-training improves transfer and organizes subject-sensitive neural representations beyond reconstruction alone. These results establish invariance learning as a promising principle for building reusable EEG foundation models.

cs.LG↗

arXiv2026

DSA-SRGS: Super-Resolution Gaussian Splatting for Dynamic Sparse-View DSA Reconstruction

Digital subtraction angiography (DSA) is a key imaging technique for the auxiliary diagnosis and treatment of cerebrovascular diseases. Recent advancements in gaussian splatting and dynamic neural representations have enabled robust 3D vessel reconstruction from sparse dynamic inputs. However, these methods are fundamentally constrained by the resolution of input projections, where performing naive upsampling to enhance rendering resolution inevitably results in severe blurring and aliasing artifacts. Such lack of super-resolution capability prevents the reconstructed 4D models from recovering fine-grained vascular details and intricate branching structures, which restricts their application in precision diagnosis and treatment. To solve this problem, this paper proposes DSA-SRGS, the first super-resolution gaussian splatting framework for dynamic sparse-view DSA reconstruction. Specifically, we introduce a Multi-Fidelity Texture Learning Module that integrates high-quality priors from a fine-tuned DSA-specific super-resolution model, into the 4D reconstruction optimization. To mitigate potential hallucination artifacts from pseudo-labels, this module employs a Confidence-Aware Strategy to adaptively weight supervision signals between the original low-resolution projections and the generated high-resolution pseudo-labels. Furthermore, we develop Radiative Sub-Pixel Densification, an adaptive strategy that leverages gradient accumulation from high-resolution sub-pixel sampling to refine the 4D radiative gaussian kernels. Extensive experiments on two clinical DSA datasets demonstrate that DSA-SRGS significantly outperforms state-of-the-art methods in both quantitative metrics and qualitative visual fidelity.

cs.CV↗

arXiv2025

Exceptional Alkaline Methanol Electrooxidation on Bi-modified Pt3M Intermetallics: Kinetic Origins and an OH Binding Energy Descriptor

The exploration of advanced CO-free catalysts and clarifying the ambiguous kinetic origins and governing factors would undoubtedly open up opportunities to overcome the sluggish kinetics of methanol electrooxidation and promote the development of direct methanol fuel cells. Herein, we constructed a family of Bi-modified Pt3M intermetallic catalysts (Bi-Pt3M/C, M=Cr, Mn, Co, Zn, In, Ga, and Sn) that follow CO-free dominated pathway and exhibit exceptional catalytic activity. More significantly, leveraging this platform, we have identified the pivotal factor governing the reaction kinetics in CO-free pathway, namely OH binding energy (OHBE). This arises because the rate-determining step (RDS) encompasses both C-H bond activation and water dissociation, whose respective barriers can be reflected by the OHBE. Accordingly, OHBE can act as an activity descriptor. Specifically, Bi-Pt3In/C stands out from other Bi-Pt3M/C and delivers the unprecedented mass activity of 36.7 A mgPt-1 at peak potential, far exceeding state-of-the-art Pt-based catalysts reported to date. Taking Bi-Pt3In/C as a proof of concept, we clearly elucidate the origin of enhanced MOR activity by combining theoretical calculations, kinetic isotope effects, and formaldehyde electrooxidation. Moreover, there exhibits a volcano-type trend between OHBE and the activity of Bi-Pt3M/C. Beyond the discovery of ultrahigh-performance catalysts, these findings provide a detailed mechanistic picture of RDS and offer an innovative design principle for advanced catalysts.

physics.chem-ph↗

arXiv2025

Shape-preserving Tooth Segmentation from CBCT Images Using Deep Learning with Semantic and Shape Awareness

Background:Accurate tooth segmentation from cone beam computed tomography (CBCT) images is crucial for digital dentistry but remains challenging in cases of interdental adhesions, which cause severe anatomical shape distortion. Methods: To address this, we propose a deep learning framework that integrates semantic and shape awareness for shape-preserving segmentation. Our method introduces a target-tooth-centroid prompted multi-label learning strategy to model semantic relationships between teeth, reducing shape ambiguity. Additionally, a tooth-shape-aware learning mechanism explicitly enforces morphological constraints to preserve boundary integrity. These components are unified via multi-task learning, jointly optimizing segmentation and shape preservation. Results: Extensive evaluations on internal and external datasets demonstrate that our approach significantly outperforms existing methods. Conclusions: Our approach effectively mitigates shape distortions and providing anatomically faithful tooth boundaries.

cs.CV↗

arXiv2025

Adapting Foundation Model for Dental Caries Detection with Dual-View Co-Training

Accurate dental caries detection from panoramic X-rays plays a pivotal role in preventing lesion progression. However, current detection methods often yield suboptimal accuracy due to subtle contrast variations and diverse lesion morphology of dental caries. In this work, inspired by the clinical workflow where dentists systematically combine whole-image screening with detailed tooth-level inspection, we present DVCTNet, a novel Dual-View Co-Training network for accurate dental caries detection. Our DVCTNet starts with employing automated tooth detection to establish two complementary views: a global view from panoramic X-ray images and a local view from cropped tooth images. We then pretrain two vision foundation models separately on the two views. The global-view foundation model serves as the detection backbone, generating region proposals and global features, while the local-view model extracts detailed features from corresponding cropped tooth patches matched by the region proposals. To effectively integrate information from both views, we introduce a Gated Cross-View Attention (GCV-Atten) module that dynamically fuses dual-view features, enhancing the detection pipeline by integrating the fused features back into the detection model for final caries detection. To rigorously evaluate our DVCTNet, we test it on a public dataset and further validate its performance on a newly curated, high-precision dental caries detection dataset, annotated using both intra-oral images and panoramic X-rays for double verification. Experimental results demonstrate DVCTNet's superior performance against existing state-of-the-art (SOTA) methods on both datasets, indicating the clinical applicability of our method. Our code and labeled dataset are available at https://github.com/ShanghaiTech-IMPACT/DVCTNet.

cs.CV↗

arXiv2025

Dual Cross-image Semantic Consistency with Self-aware Pseudo Labeling for Semi-supervised Medical Image Segmentation

Semi-supervised learning has proven highly effective in tackling the challenge of limited labeled training data in medical image segmentation. In general, current approaches, which rely on intra-image pixel-wise consistency training via pseudo-labeling, overlook the consistency at more comprehensive semantic levels (e.g., object region) and suffer from severe discrepancy of extracted features resulting from an imbalanced number of labeled and unlabeled data. To overcome these limitations, we present a new \underline{Du}al \underline{C}ross-\underline{i}mage \underline{S}emantic \underline{C}onsistency (DuCiSC) learning framework, for semi-supervised medical image segmentation. Concretely, beyond enforcing pixel-wise semantic consistency, DuCiSC proposes dual paradigms to encourage region-level semantic consistency across: 1) labeled and unlabeled images; and 2) labeled and fused images, by explicitly aligning their prototypes. Relying on the dual paradigms, DuCiSC can effectively establish consistent cross-image semantics via prototype representations, thereby addressing the feature discrepancy issue. Moreover, we devise a novel self-aware confidence estimation strategy to accurately select reliable pseudo labels, allowing for exploiting the training dynamics of unlabeled data. Our DuCiSC method is extensively validated on four datasets, including two popular binary benchmarks in segmenting the left atrium and pancreas, a multi-class Automatic Cardiac Diagnosis Challenge dataset, and a challenging scenario of segmenting the inferior alveolar nerve that features complicated anatomical structures, showing superior segmentation results over previous state-of-the-art approaches. Our code is publicly available at \href{https://github.com/ShanghaiTech-IMPACT/DuCiSC}{https://github.com/ShanghaiTech-IMPACT/DuCiSC}.

cs.CV↗

arXiv2024

4DRGS: 4D Radiative Gaussian Splatting for Efficient 3D Vessel Reconstruction from Sparse-View Dynamic DSA Images

Reconstructing 3D vessel structures from sparse-view dynamic digital subtraction angiography (DSA) images enables accurate medical assessment while reducing radiation exposure. Existing methods often produce suboptimal results or require excessive computation time. In this work, we propose 4D radiative Gaussian splatting (4DRGS) to achieve high-quality reconstruction efficiently. In detail, we represent the vessels with 4D radiative Gaussian kernels. Each kernel has time-invariant geometry parameters, including position, rotation, and scale, to model static vessel structures. The time-dependent central attenuation of each kernel is predicted from a compact neural network to capture the temporal varying response of contrast agent flow. We splat these Gaussian kernels to synthesize DSA images via X-ray rasterization and optimize the model with real captured ones. The final 3D vessel volume is voxelized from the well-trained kernels. Moreover, we introduce accumulated attenuation pruning and bounded scaling activation to improve reconstruction quality. Extensive experiments on real-world patient data demonstrate that 4DRGS achieves impressive results in 5 minutes training, which is 32x faster than the state-of-the-art method. This underscores the potential of 4DRGS for real-world clinics.

eess.IV↗

arXiv2024

3D MedDiffusion: A 3D Medical Latent Diffusion Model for Controllable and High-quality Medical Image Generation

The generation of medical images presents significant challenges due to their high-resolution and three-dimensional nature. Existing methods often yield suboptimal performance in generating high-quality 3D medical images, and there is currently no universal generative framework for medical imaging. In this paper, we introduce a 3D Medical Latent Diffusion (3D MedDiffusion) model for controllable, high-quality 3D medical image generation. 3D MedDiffusion incorporates a novel, highly efficient Patch-Volume Autoencoder that compresses medical images into latent space through patch-wise encoding and recovers back into image space through volume-wise decoding. Additionally, we design a new noise estimator to capture both local details and global structural information during diffusion denoising process. 3D MedDiffusion can generate fine-detailed, high-resolution images (up to 512x512x512) and effectively adapt to various downstream tasks as it is trained on large-scale datasets covering CT and MRI modalities and different anatomical regions (from head to leg). Experimental results demonstrate that 3D MedDiffusion surpasses state-of-the-art methods in generative quality and exhibits strong generalizability across tasks such as sparse-view CT reconstruction, fast MRI reconstruction, and data augmentation for segmentation and classification. Source code and checkpoints are available at https://github.com/ShanghaiTech-IMPACT/3D-MedDiffusion.

eess.IV↗

arXiv2024

Align3R: Aligned Monocular Depth Estimation for Dynamic Videos

Recent developments in monocular depth estimation methods enable high-quality depth estimation of single-view images but fail to estimate consistent video depth across different frames. Recent works address this problem by applying a video diffusion model to generate video depth conditioned on the input video, which is training-expensive and can only produce scale-invariant depth values without camera poses. In this paper, we propose a novel video-depth estimation method called Align3R to estimate temporal consistent depth maps for a dynamic video. Our key idea is to utilize the recent DUSt3R model to align estimated monocular depth maps of different timesteps. First, we fine-tune the DUSt3R model with additional estimated monocular depth as inputs for the dynamic scenes. Then, we apply optimization to reconstruct both depth maps and camera poses. Extensive experiments demonstrate that Align3R estimates consistent video depth and camera poses for a monocular video with superior performance than baseline methods.

cs.CV↗

arXiv2024

VQ-SGen: A Vector Quantized Stroke Representation for Creative Sketch Generation

This paper presents VQ-SGen, a novel algorithm for high-quality creative sketch generation. Recent approaches have framed the task as pixel-based generation either as a whole or part-by-part, neglecting the intrinsic and contextual relationships among individual strokes, such as the shape and spatial positioning of both proximal and distant strokes. To overcome these limitations, we propose treating each stroke within a sketch as an entity and introducing a vector-quantized (VQ) stroke representation for fine-grained sketch generation. Our method follows a two-stage framework - in stage one, we decouple each stroke's shape and location information to ensure the VQ representation prioritizes stroke shape learning. In stage two, we feed the precise and compact representation into an auto-decoding Transformer to incorporate stroke semantics, positions, and shapes into the generation process. By utilizing tokenized stroke representation, our approach generates strokes with high fidelity and facilitates novel applications, such as text or class label conditioned generation and sketch completion. Comprehensive experiments demonstrate our method surpasses existing state-of-the-art techniques on the CreativeSketch dataset, underscoring its effectiveness.

cs.CV↗

arXiv2024

Unveiling High Selectivity Origin of Pt-Bi Catalysts for Alkaline Methanol Electrooxidation via CO-free pathway

A long-standing puzzle for methanol electrooxidation is how to achieve a CO-free pathway and accurately understand the origin of electrocatalytic selectivity. Herein, we unequivocally demonstrate that the Bi-modified Pt/C follows a CO-free dominated pathway during alkaline methanol electrooxidation, and unveil the formaldehyde (HCHO) intermediate as a critical factor influencing pathway selectivity. These findings are substantiated by kinetic isotope effects, formate Faradaic efficiency, in situ spectroscopy, ab initio molecular dynamic simulations, and density functional theory calculations. Bi modification significantly increases the HCHO dehydrogenation barrier, which facilitates its desorption and subsequent conversion to the H2COOH- anion at the alkaline interface, intrinsically avoiding CO formation. More specifically, the formation of ensemble sites featuring V-shaped Bi-Pt-Bi configuration inhibits the cleavage of C-H bond, and the weak OH binding energy at Bi adatoms effectively prevents blockage of oxygenated species, allowing such ensemble sites to fulfill their functional role. Our study opens up a novel dimension for designing advanced CO-free catalysts.

physics.chem-ph↗

arXiv2024

TeethDreamer: 3D Teeth Reconstruction from Five Intra-oral Photographs

Orthodontic treatment usually requires regular face-to-face examinations to monitor dental conditions of the patients. When in-person diagnosis is not feasible, an alternative is to utilize five intra-oral photographs for remote dental monitoring. However, it lacks of 3D information, and how to reconstruct 3D dental models from such sparse view photographs is a challenging problem. In this study, we propose a 3D teeth reconstruction framework, named TeethDreamer, aiming to restore the shape and position of the upper and lower teeth. Given five intra-oral photographs, our approach first leverages a large diffusion model's prior knowledge to generate novel multi-view images with known poses to address sparse inputs and then reconstructs high-quality 3D teeth models by neural surface reconstruction. To ensure the 3D consistency across generated views, we integrate a 3D-aware feature attention mechanism in the reverse diffusion process. Moreover, a geometry-aware normal loss is incorporated into the teeth reconstruction process to enhance geometry accuracy. Extensive experiments demonstrate the superiority of our method over current state-of-the-arts, giving the potential to monitor orthodontic treatment remotely. Our code is available at https://github.com/ShanghaiTech-IMPACT/TeethDreamer

cs.CV↗

arXiv2024

Cephalometric Landmark Detection across Ages with Prototypical Network

Automated cephalometric landmark detection is crucial in real-world orthodontic diagnosis. Current studies mainly focus on only adult subjects, neglecting the clinically crucial scenario presented by adolescents whose landmarks often exhibit significantly different appearances compared to adults. Hence, an open question arises about how to develop a unified and effective detection algorithm across various age groups, including adolescents and adults. In this paper, we propose CeLDA, the first work for Cephalometric Landmark Detection across Ages. Our method leverages a prototypical network for landmark detection by comparing image features with landmark prototypes. To tackle the appearance discrepancy of landmarks between age groups, we design new strategies for CeLDA to improve prototype alignment and obtain a holistic estimation of landmark prototypes from a large set of training images. Moreover, a novel prototype relation mining paradigm is introduced to exploit the anatomical relations between the landmark prototypes. Extensive experiments validate the superiority of CeLDA in detecting cephalometric landmarks on both adult and adolescent subjects. To our knowledge, this is the first effort toward developing a unified solution and dataset for cephalometric landmark detection across age groups. Our code and dataset will be made public on https://github.com/ShanghaiTech-IMPACT/Cephalometric-Landmark-Detection-across-Ages-with-Prototypical-Network

cs.CV↗

arXiv2024

3D Vessel Reconstruction from Sparse-View Dynamic DSA Images via Vessel Probability Guided Attenuation Learning

Digital Subtraction Angiography (DSA) is one of the gold standards for vascular disease diagnosis. With the help of a contrast agent, time-resolved 2D DSA images deliver comprehensive blood flow information and can be utilized to reconstruct 3D vessel structures for medical assessment. Current commercial DSA systems typically require hundreds of scanning views to perform reconstruction, resulting in substantial radiation exposure. In this study, we propose a neural rendering-based optimization framework tailored for high-quality sparse-view DSA reconstruction to reduce radiation dosage. Our approach, termed vessel probability guided attenuation learning, represents DSA imaging as a complementary weighted combination of static and dynamic attenuation fields, with the weights derived from the time-independent vessel probability field. Functioning as a foreground mask, vessel probability provides proper gradients for both static and dynamic fields adaptive to different scene types. This mechanism enables self-supervised decomposition between static backgrounds and dynamic contrast agent flow, and significantly improves reconstruction quality. Our model is trained by minimizing the discrepancy between synthesized projections and real captured DSA images. We further employ two training strategies to improve reconstruction quality: (1) coarse-to-fine progressive training for better geometry and (2) temporal perturbed rendering loss for temporal consistency. Experimental results have demonstrated high-quality 3D vessel reconstruction and 2D DSA image synthesis.

eess.IV↗

arXiv2023

CLIP in Medical Imaging: A Survey

Contrastive Language-Image Pre-training (CLIP), a simple yet effective pre-training paradigm, successfully introduces text supervision to vision models. It has shown promising results across various tasks due to its generalizability and interpretability. The use of CLIP has recently gained increasing interest in the medical imaging domain, serving as a pre-training paradigm for image-text alignment, or a critical component in diverse clinical tasks. With the aim of facilitating a deeper understanding of this promising direction, this survey offers an in-depth exploration of the CLIP within the domain of medical imaging, regarding both refined CLIP pre-training and CLIP-driven applications. In this paper, we (1) first start with a brief introduction to the fundamentals of CLIP methodology; (2) then investigate the adaptation of CLIP pre-training in the medical imaging domain, focusing on how to optimize CLIP given characteristics of medical images and reports; (3) further explore practical utilization of CLIP pre-trained models in various tasks, including classification, dense prediction, and cross-modal tasks; and (4) finally discuss existing limitations of CLIP in the context of medical imaging, and propose forward-looking directions to address the demands of medical imaging domain. Studies featuring technical and practical value are both investigated. We expect this survey will provide researchers with a holistic understanding of the CLIP paradigm and its potential implications. The project page of this survey can also be found on https://github.com/zhaozh10/Awesome-CLIP-in-Medical-Imaging.

cs.CV↗

arXiv2023

3D Structure-guided Network for Tooth Alignment in 2D Photograph

Orthodontics focuses on rectifying misaligned teeth (i.e., malocclusions), affecting both masticatory function and aesthetics. However, orthodontic treatment often involves complex, lengthy procedures. As such, generating a 2D photograph depicting aligned teeth prior to orthodontic treatment is crucial for effective dentist-patient communication and, more importantly, for encouraging patients to accept orthodontic intervention. In this paper, we propose a 3D structure-guided tooth alignment network that takes 2D photographs as input (e.g., photos captured by smartphones) and aligns the teeth within the 2D image space to generate an orthodontic comparison photograph featuring aesthetically pleasing, aligned teeth. Notably, while the process operates within a 2D image space, our method employs 3D intra-oral scanning models collected in clinics to learn about orthodontic treatment, i.e., projecting the pre- and post-orthodontic 3D tooth structures onto 2D tooth contours, followed by a diffusion model to learn the mapping relationship. Ultimately, the aligned tooth contours are leveraged to guide the generation of a 2D photograph with aesthetically pleasing, aligned teeth and realistic textures. We evaluate our network on various facial photographs, demonstrating its exceptional performance and strong applicability within the orthodontic industry.

cs.CV↗

arXiv2023

Tissue Segmentation of Thick-Slice Fetal Brain MR Scans with Guidance from High-Quality Isotropic Volumes

Accurate tissue segmentation of thick-slice fetal brain magnetic resonance (MR) scans is crucial for both reconstruction of isotropic brain MR volumes and the quantification of fetal brain development. However, this task is challenging due to the use of thick-slice scans in clinically-acquired fetal brain data. To address this issue, we propose to leverage high-quality isotropic fetal brain MR volumes (and also their corresponding annotations) as guidance for segmentation of thick-slice scans. Due to existence of significant domain gap between high-quality isotropic volume (i.e., source data) and thick-slice scans (i.e., target data), we employ a domain adaptation technique to achieve the associated knowledge transfer (from high-quality volumes to thick-slice scans). Specifically, we first register the available high-quality isotropic fetal brain MR volumes across different gestational weeks to construct longitudinally-complete source data. To capture domain-invariant information, we then perform Fourier decomposition to extract image content and style codes. Finally, we propose a novel Cycle-Consistent Domain Adaptation Network (C2DA-Net) to efficiently transfer the knowledge learned from high-quality isotropic volumes for accurate tissue segmentation of thick-slice scans. Our C2DA-Net can fully utilize a small set of annotated isotropic volumes to guide tissue segmentation on unannotated thick-slice scans. Extensive experiments on a large-scale dataset of 372 clinically acquired thick-slice MR scans demonstrate that our C2DA-Net achieves much better performance than cutting-edge methods quantitatively and qualitatively.

eess.IV↗

arXiv2023

Multi-View Vertebra Localization and Identification from CT Images

Accurately localizing and identifying vertebrae from CT images is crucial for various clinical applications. However, most existing efforts are performed on 3D with cropping patch operation, suffering from the large computation costs and limited global information. In this paper, we propose a multi-view vertebra localization and identification from CT images, converting the 3D problem into a 2D localization and identification task on different views. Without the limitation of the 3D cropped patch, our method can learn the multi-view global information naturally. Moreover, to better capture the anatomical structure information from different view perspectives, a multi-view contrastive learning strategy is developed to pre-train the backbone. Additionally, we further propose a Sequence Loss to maintain the sequential structure embedded along the vertebrae. Evaluation results demonstrate that, with only two 2D networks, our method can localize and identify vertebrae in CT images accurately, and outperforms the state-of-the-art methods consistently. Our code is available at https://github.com/ShanghaiTech-IMPACT/Multi-View-Vertebra-Localization-and-Identification-from-CT-Images.

eess.IV↗