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Zhongcan Ouyang

Publications and source records attributed to Zhongcan Ouyang.

4 recordsLinked to original sources

Entropy-Driven Initiation and Cytoskeletal Viscoelasticity in Endocytosis: An Onsager Variational Framework

Receptor-mediated endocytosis requires a particle to approach the cell membrane to within a few nanometers before ligand--receptor binding can occur. Existing continuum models often start from an already established contact and do not explicitly describe how crowding particles on the extracellular side influence the distribution of the particle near the membrane. We examine entropic depletion forces as one possible nonspecific contribution to this initial approach. For ideal depletants, the Asakura--Oosawa excluded-volume construction gives an exact depletion potential for the planar geometry before contact. The potential and force vanish continuously at the onset of excluded-volume overlap. This interaction provides a possible contribution to membrane proximity before specific binding, while its extension to curved wrapping geometries requires additional approximation. Within a reduced continuum model, we combine depletion attraction, ligand--receptor binding, membrane deformation, and cytoskeletal viscoelastic dissipation. The viscoelastic contact is formulated through a hereditary integral and a standard linear solid. The kinetic model gives a conditional minimum ligand density for complete engulfment, a finite particle-size window, and a stiffness-dependent upper limit. When the stationary radius lies inside the domain of finite positive wrapping times, the estimated wrapping time has a minimum at a radius that decreases with increasing binding energy density. At fixed viscosity and other independent parameters, the same time approximation predicts slower wrapping as cell stiffness increases. The two positive roots defining the size window merge at a limiting parameter value, which characterizes closure of the admissible size interval. Depletion attraction is interpreted as one possible contribution to particle-membrane association

cond-mat.soft↗

The "coin-through-the-rubber" trick: an elastically stabilized invagination

A spectacular trick of close-up magicians involves the apparent passing of a coin through a rubber sheet. The magic is based on the unusual elastic response of a thin rubber sheet: the formation of an invagination, stabilized by friction and elasticity, which holds the coin. By pressing on the coin, the invagination becomes unstable, and the coin is released. We describe the deformation analytically using a simple Hookean description, and examine the stability of the invagination. We finally compare the prediction of the Hookean analysis with numerical solutions of the neo-Hookean model, and provide a brief commentary on the origins of the trick.

physics.pop-ph↗

Phase diagrams in inflating balloon

Volume transition of an inflating cylindrical balloon made of rubber under external force $F$ is studied based on the non-linear elastic theory for rubber. The pressure difference $ΔP$ between inside and outside of the balloon is calculated as a function of the volume $V$ of the fluid inside the balloon. It is shown that if $F$ is smaller than a critical value $F_c$, the inflation of the balloon takes place with coexistence of strongly inflated region and weakly inflated region, while if $F$ is larger than $F_c$, the inflation takes place uniformly. It is shown that the critical force $F_c$ depends on the material parameter of the rubber, and that the discontinuous transition for finite stretching force can take place only when the rubber has enough stretchability

cond-mat.soft↗

Simulations of tubulin sheet polymers as possible structural intermediates in microtubule assembly

The microtubule assembly process has been extensively studied, but the underlying molecular mechanism remains poorly understood. The structure of an artificially generated sheet polymer that alternates two types of lateral contacts and that directly converts into microtubules, has been proposed to correspond to the intermediate sheet structure observed during microtubule assembly. We have studied the self-assembly process of GMPCPP tubulins into sheet and microtubule structures using thermodynamic analysis and stochastic simulations. With the novel assumptions that tubulins can laterally interact in two different forms, and allosterically affect neighboring lateral interactions, we can explain existing experimental observations. At low temperature, the allosteric effect results in the observed sheet structure with alternating lateral interactions as the thermodynamically most stable form. At normal microtubule assembly temperature, our work indicates that a class of sheet structures resembling those observed at low temperature is transiently trapped as an intermediate during the assembly process. This work may shed light on the tubulin molecular interactions, and the role of sheet formation during microtubule assembly.

q-bio.BM↗