arXiv subjects

Zhongying Deng

Publications and source records attributed to Zhongying Deng.

33 records · Page 2Linked to original sources

arXiv2024

Bilevel Hypergraph Networks for Multi-Modal Alzheimer's Diagnosis

Early detection of Alzheimer's disease's precursor stages is imperative for significantly enhancing patient outcomes and quality of life. This challenge is tackled through a semi-supervised multi-modal diagnosis framework. In particular, we introduce a new hypergraph framework that enables higher-order relations between multi-modal data, while utilising minimal labels. We first introduce a bilevel hypergraph optimisation framework that jointly learns a graph augmentation policy and a semi-supervised classifier. This dual learning strategy is hypothesised to enhance the robustness and generalisation capabilities of the model by fostering new pathways for information propagation. Secondly, we introduce a novel strategy for generating pseudo-labels more effectively via a gradient-driven flow. Our experimental results demonstrate the superior performance of our framework over current techniques in diagnosing Alzheimer's disease.

cs.LG↗

arXiv2024

NorMatch: Matching Normalizing Flows with Discriminative Classifiers for Semi-Supervised Learning

Semi-Supervised Learning (SSL) aims to learn a model using a tiny labeled set and massive amounts of unlabeled data. To better exploit the unlabeled data the latest SSL methods use pseudo-labels predicted from a single discriminative classifier. However, the generated pseudo-labels are inevitably linked to inherent confirmation bias and noise which greatly affects the model performance. In this work we introduce a new framework for SSL named NorMatch. Firstly, we introduce a new uncertainty estimation scheme based on normalizing flows, as an auxiliary classifier, to enforce highly certain pseudo-labels yielding a boost of the discriminative classifiers. Secondly, we introduce a threshold-free sample weighting strategy to exploit better both high and low confidence pseudo-labels. Furthermore, we utilize normalizing flows to model, in an unsupervised fashion, the distribution of unlabeled data. This modelling assumption can further improve the performance of generative classifiers via unlabeled data, and thus, implicitly contributing to training a better discriminative classifier. We demonstrate, through numerical and visual results, that NorMatch achieves state-of-the-art performance on several datasets.

cs.CV↗

arXiv2023

Enhancing Medical Task Performance in GPT-4V: A Comprehensive Study on Prompt Engineering Strategies

OpenAI's latest large vision-language model (LVLM), GPT-4V(ision), has piqued considerable interest for its potential in medical applications. Despite its promise, recent studies and internal reviews highlight its underperformance in specialized medical tasks. This paper explores the boundary of GPT-4V's capabilities in medicine, particularly in processing complex imaging data from endoscopies, CT scans, and MRIs etc. Leveraging open-source datasets, we assessed its foundational competencies, identifying substantial areas for enhancement. Our research emphasizes prompt engineering, an often-underutilized strategy for improving AI responsiveness. Through iterative testing, we refined the model's prompts, significantly improving its interpretative accuracy and relevance in medical imaging. From our comprehensive evaluations, we distilled 10 effective prompt engineering techniques, each fortifying GPT-4V's medical acumen. These methodical enhancements facilitate more reliable, precise, and clinically valuable insights from GPT-4V, advancing its operability in critical healthcare environments. Our findings are pivotal for those employing AI in medicine, providing clear, actionable guidance on harnessing GPT-4V's full diagnostic potential.

cs.CL↗

arXiv2023

TrafficMOT: A Challenging Dataset for Multi-Object Tracking in Complex Traffic Scenarios

Multi-object tracking in traffic videos is a crucial research area, offering immense potential for enhancing traffic monitoring accuracy and promoting road safety measures through the utilisation of advanced machine learning algorithms. However, existing datasets for multi-object tracking in traffic videos often feature limited instances or focus on single classes, which cannot well simulate the challenges encountered in complex traffic scenarios. To address this gap, we introduce TrafficMOT, an extensive dataset designed to encompass diverse traffic situations with complex scenarios. To validate the complexity and challenges presented by TrafficMOT, we conducted comprehensive empirical studies using three different settings: fully-supervised, semi-supervised, and a recent powerful zero-shot foundation model Tracking Anything Model (TAM). The experimental results highlight the inherent complexity of this dataset, emphasising its value in driving advancements in the field of traffic monitoring and multi-object tracking.

cs.CV↗

arXiv2023

SA-Med2D-20M Dataset: Segment Anything in 2D Medical Imaging with 20 Million masks

Segment Anything Model (SAM) has achieved impressive results for natural image segmentation with input prompts such as points and bounding boxes. Its success largely owes to massive labeled training data. However, directly applying SAM to medical image segmentation cannot perform well because SAM lacks medical knowledge -- it does not use medical images for training. To incorporate medical knowledge into SAM, we introduce SA-Med2D-20M, a large-scale segmentation dataset of 2D medical images built upon numerous public and private datasets. It consists of 4.6 million 2D medical images and 19.7 million corresponding masks, covering almost the whole body and showing significant diversity. This paper describes all the datasets collected in SA-Med2D-20M and details how to process these datasets. Furthermore, comprehensive statistics of SA-Med2D-20M are presented to facilitate the better use of our dataset, which can help the researchers build medical vision foundation models or apply their models to downstream medical applications. We hope that the large scale and diversity of SA-Med2D-20M can be leveraged to develop medical artificial intelligence for enhancing diagnosis, medical image analysis, knowledge sharing, and education. The data with the redistribution license is publicly available at https://github.com/OpenGVLab/SAM-Med2D.

eess.IV↗

arXiv2023

A-Eval: A Benchmark for Cross-Dataset Evaluation of Abdominal Multi-Organ Segmentation

Although deep learning have revolutionized abdominal multi-organ segmentation, models often struggle with generalization due to training on small, specific datasets. With the recent emergence of large-scale datasets, some important questions arise: \textbf{Can models trained on these datasets generalize well on different ones? If yes/no, how to further improve their generalizability?} To address these questions, we introduce A-Eval, a benchmark for the cross-dataset Evaluation ('Eval') of Abdominal ('A') multi-organ segmentation. We employ training sets from four large-scale public datasets: FLARE22, AMOS, WORD, and TotalSegmentator, each providing extensive labels for abdominal multi-organ segmentation. For evaluation, we incorporate the validation sets from these datasets along with the training set from the BTCV dataset, forming a robust benchmark comprising five distinct datasets. We evaluate the generalizability of various models using the A-Eval benchmark, with a focus on diverse data usage scenarios: training on individual datasets independently, utilizing unlabeled data via pseudo-labeling, mixing different modalities, and joint training across all available datasets. Additionally, we explore the impact of model sizes on cross-dataset generalizability. Through these analyses, we underline the importance of effective data usage in enhancing models' generalization capabilities, offering valuable insights for assembling large-scale datasets and improving training strategies. The code and pre-trained models are available at \href{https://github.com/uni-medical/A-Eval}{https://github.com/uni-medical/A-Eval}.

eess.IV↗

arXiv2023

SAM-Med2D

The Segment Anything Model (SAM) represents a state-of-the-art research advancement in natural image segmentation, achieving impressive results with input prompts such as points and bounding boxes. However, our evaluation and recent research indicate that directly applying the pretrained SAM to medical image segmentation does not yield satisfactory performance. This limitation primarily arises from significant domain gap between natural images and medical images. To bridge this gap, we introduce SAM-Med2D, the most comprehensive studies on applying SAM to medical 2D images. Specifically, we first collect and curate approximately 4.6M images and 19.7M masks from public and private datasets, constructing a large-scale medical image segmentation dataset encompassing various modalities and objects. Then, we comprehensively fine-tune SAM on this dataset and turn it into SAM-Med2D. Unlike previous methods that only adopt bounding box or point prompts as interactive segmentation approach, we adapt SAM to medical image segmentation through more comprehensive prompts involving bounding boxes, points, and masks. We additionally fine-tune the encoder and decoder of the original SAM to obtain a well-performed SAM-Med2D, leading to the most comprehensive fine-tuning strategies to date. Finally, we conducted a comprehensive evaluation and analysis to investigate the performance of SAM-Med2D in medical image segmentation across various modalities, anatomical structures, and organs. Concurrently, we validated the generalization capability of SAM-Med2D on 9 datasets from MICCAI 2023 challenge. Overall, our approach demonstrated significantly superior performance and generalization capability compared to SAM.

cs.CV↗

arXiv2023

STU-Net: Scalable and Transferable Medical Image Segmentation Models Empowered by Large-Scale Supervised Pre-training

Large-scale models pre-trained on large-scale datasets have profoundly advanced the development of deep learning. However, the state-of-the-art models for medical image segmentation are still small-scale, with their parameters only in the tens of millions. Further scaling them up to higher orders of magnitude is rarely explored. An overarching goal of exploring large-scale models is to train them on large-scale medical segmentation datasets for better transfer capacities. In this work, we design a series of Scalable and Transferable U-Net (STU-Net) models, with parameter sizes ranging from 14 million to 1.4 billion. Notably, the 1.4B STU-Net is the largest medical image segmentation model to date. Our STU-Net is based on nnU-Net framework due to its popularity and impressive performance. We first refine the default convolutional blocks in nnU-Net to make them scalable. Then, we empirically evaluate different scaling combinations of network depth and width, discovering that it is optimal to scale model depth and width together. We train our scalable STU-Net models on a large-scale TotalSegmentator dataset and find that increasing model size brings a stronger performance gain. This observation reveals that a large model is promising in medical image segmentation. Furthermore, we evaluate the transferability of our model on 14 downstream datasets for direct inference and 3 datasets for further fine-tuning, covering various modalities and segmentation targets. We observe good performance of our pre-trained model in both direct inference and fine-tuning. The code and pre-trained models are available at https://github.com/Ziyan-Huang/STU-Net.

cs.CV↗

arXiv2023

Generative Model Based Noise Robust Training for Unsupervised Domain Adaptation

Target domain pseudo-labelling has shown effectiveness in unsupervised domain adaptation (UDA). However, pseudo-labels of unlabeled target domain data are inevitably noisy due to the distribution shift between source and target domains. This paper proposes a Generative model-based Noise-Robust Training method (GeNRT), which eliminates domain shift while mitigating label noise. GeNRT incorporates a Distribution-based Class-wise Feature Augmentation (D-CFA) and a Generative-Discriminative classifier Consistency (GDC), both based on the class-wise target distributions modelled by generative models. D-CFA minimizes the domain gap by augmenting the source data with distribution-sampled target features, and trains a noise-robust discriminative classifier by using target domain knowledge from the generative models. GDC regards all the class-wise generative models as generative classifiers and enforces a consistency regularization between the generative and discriminative classifiers. It exploits an ensemble of target knowledge from all the generative models to train a noise-robust discriminative classifier and eventually gets theoretically linked to the Ben-David domain adaptation theorem for reducing the domain gap. Extensive experiments on Office-Home, PACS, and Digit-Five show that our GeNRT achieves comparable performance to state-of-the-art methods under single-source and multi-source UDA settings.

cs.CV↗

arXiv2022

TrafficCAM: A Versatile Dataset for Traffic Flow Segmentation

Traffic flow analysis is revolutionising traffic management. Qualifying traffic flow data, traffic control bureaus could provide drivers with real-time alerts, advising the fastest routes and therefore optimising transportation logistics and reducing congestion. The existing traffic flow datasets have two major limitations. They feature a limited number of classes, usually limited to one type of vehicle, and the scarcity of unlabelled data. In this paper, we introduce a new benchmark traffic flow image dataset called TrafficCAM. Our dataset distinguishes itself by two major highlights. Firstly, TrafficCAM provides both pixel-level and instance-level semantic labelling along with a large range of types of vehicles and pedestrians. It is composed of a large and diverse set of video sequences recorded in streets from eight Indian cities with stationary cameras. Secondly, TrafficCAM aims to establish a new benchmark for developing fully-supervised tasks, and importantly, semi-supervised learning techniques. It is the first dataset that provides a vast amount of unlabelled data, helping to better capture traffic flow qualification under a low cost annotation requirement. More precisely, our dataset has 4,402 image frames with semantic and instance annotations along with 59,944 unlabelled image frames. We validate our new dataset through a large and comprehensive range of experiments on several state-of-the-art approaches under four different settings: fully-supervised semantic and instance segmentation, and semi-supervised semantic and instance segmentation tasks. Our benchmark dataset will be released.

cs.CV↗

arXiv2022

Exploring Vanilla U-Net for Lesion Segmentation from Whole-body FDG-PET/CT Scans

Tumor lesion segmentation is one of the most important tasks in medical image analysis. In clinical practice, Fluorodeoxyglucose Positron-Emission Tomography~(FDG-PET) is a widely used technique to identify and quantify metabolically active tumors. However, since FDG-PET scans only provide metabolic information, healthy tissue or benign disease with irregular glucose consumption may be mistaken for cancer. To handle this challenge, PET is commonly combined with Computed Tomography~(CT), with the CT used to obtain the anatomic structure of the patient. The combination of PET-based metabolic and CT-based anatomic information can contribute to better tumor segmentation results. %Computed tomography~(CT) is a popular modality to illustrate the anatomic structure of the patient. The combination of PET and CT is promising to handle this challenge by utilizing metabolic and anatomic information. In this paper, we explore the potential of U-Net for lesion segmentation in whole-body FDG-PET/CT scans from three aspects, including network architecture, data preprocessing, and data augmentation. The experimental results demonstrate that the vanilla U-Net with proper input shape can achieve satisfactory performance. Specifically, our method achieves first place in both preliminary and final leaderboards of the autoPET 2022 challenge. Our code is available at https://github.com/Yejin0111/autoPET2022_Blackbean.

eess.IV↗

arXiv2022

Robust Target Training for Multi-Source Domain Adaptation

Given multiple labeled source domains and a single target domain, most existing multi-source domain adaptation (MSDA) models are trained on data from all domains jointly in one step. Such an one-step approach limits their ability to adapt to the target domain. This is because the training set is dominated by the more numerous and labeled source domain data. The source-domain-bias can potentially be alleviated by introducing a second training step, where the model is fine-tuned with the unlabeled target domain data only using pseudo labels as supervision. However, the pseudo labels are inevitably noisy and when used unchecked can negatively impact the model performance. To address this problem, we propose a novel Bi-level Optimization based Robust Target Training (BORT$^2$) method for MSDA. Given any existing fully-trained one-step MSDA model, BORT$^2$ turns it to a labeling function to generate pseudo-labels for the target data and trains a target model using pseudo-labeled target data only. Crucially, the target model is a stochastic CNN which is designed to be intrinsically robust against label noise generated by the labeling function. Such a stochastic CNN models each target instance feature as a Gaussian distribution with an entropy maximization regularizer deployed to measure the label uncertainty, which is further exploited to alleviate the negative impact of noisy pseudo labels. Training the labeling function and the target model poses a nested bi-level optimization problem, for which we formulate an elegant solution based on implicit differentiation. Extensive experiments demonstrate that our proposed method achieves the state of the art performance on three MSDA benchmarks, including the large-scale DomainNet dataset. Our code will be available at \url{https://github.com/Zhongying-Deng/BORT2}

cs.CV↗

arXiv2022

An evaluation of U-Net in Renal Structure Segmentation

Renal structure segmentation from computed tomography angiography~(CTA) is essential for many computer-assisted renal cancer treatment applications. Kidney PArsing~(KiPA 2022) Challenge aims to build a fine-grained multi-structure dataset and improve the segmentation of multiple renal structures. Recently, U-Net has dominated the medical image segmentation. In the KiPA challenge, we evaluated several U-Net variants and selected the best models for the final submission.

eess.IV↗

arXiv2022

Dynamic Instance Domain Adaptation

Most existing studies on unsupervised domain adaptation (UDA) assume that each domain's training samples come with domain labels (e.g., painting, photo). Samples from each domain are assumed to follow the same distribution and the domain labels are exploited to learn domain-invariant features via feature alignment. However, such an assumption often does not hold true -- there often exist numerous finer-grained domains (e.g., dozens of modern painting styles have been developed, each differing dramatically from those of the classic styles). Therefore, forcing feature distribution alignment across each artificially-defined and coarse-grained domain can be ineffective. In this paper, we address both single-source and multi-source UDA from a completely different perspective, which is to view each instance as a fine domain. Feature alignment across domains is thus redundant. Instead, we propose to perform dynamic instance domain adaptation (DIDA). Concretely, a dynamic neural network with adaptive convolutional kernels is developed to generate instance-adaptive residuals to adapt domain-agnostic deep features to each individual instance. This enables a shared classifier to be applied to both source and target domain data without relying on any domain annotation. Further, instead of imposing intricate feature alignment losses, we adopt a simple semi-supervised learning paradigm using only a cross-entropy loss for both labeled source and pseudo labeled target data. Our model, dubbed DIDA-Net, achieves state-of-the-art performance on several commonly used single-source and multi-source UDA datasets including Digits, Office-Home, DomainNet, Digit-Five, and PACS.

cs.CV↗

arXiv2021

Domain Attention Consistency for Multi-Source Domain Adaptation

Most existing multi-source domain adaptation (MSDA) methods minimize the distance between multiple source-target domain pairs via feature distribution alignment, an approach borrowed from the single source setting. However, with diverse source domains, aligning pairwise feature distributions is challenging and could even be counter-productive for MSDA. In this paper, we introduce a novel approach: transferable attribute learning. The motivation is simple: although different domains can have drastically different visual appearances, they contain the same set of classes characterized by the same set of attributes; an MSDA model thus should focus on learning the most transferable attributes for the target domain. Adopting this approach, we propose a domain attention consistency network, dubbed DAC-Net. The key design is a feature channel attention module, which aims to identify transferable features (attributes). Importantly, the attention module is supervised by a consistency loss, which is imposed on the distributions of channel attention weights between source and target domains. Moreover, to facilitate discriminative feature learning on the target data, we combine pseudo-labeling with a class compactness loss to minimize the distance between the target features and the classifier's weight vectors. Extensive experiments on three MSDA benchmarks show that our DAC-Net achieves new state of the art performance on all of them.

cs.CV↗