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Zhuoyi Song

Publications and source records attributed to Zhuoyi Song.

3 recordsLinked to original sources

SpaceMind++: Toward Allocentric Cognitive Maps for Spatially Grounded Video MLLMs

Recent multimodal large language models (MLLMs) have made remarkable progress in visual understanding and language-based reasoning, yet they lack a persistent world-centered representation for spatially consistent reasoning in 3D environments. Inspired by the mammalian dual-stream system, where semantic and spatial cues are processed separately and integrated into an allocentric cognitive map, we propose SpaceMind++, a video MLLM architecture that explicitly builds a voxelized cognitive map from RGB videos. This map reorganizes fragmented egocentric observations into a shared 3D metric representation, enabling the model to preserve object permanence and spatial topology across changing viewpoints. To make this allocentric representation usable by a pretrained video MLLM without disrupting its native visual-token interface, we introduce Coordinate-Guided Deep Iterative Fusion, a new mechanism that relays map-level spatial knowledge back into the original 2D visual features. This fusion is explicitly guided by coordinate embeddings and 3D Rotary Positional Encoding, which ground semantic interactions in metric 3D space, resembling the entorhinal binding of sensory features to metric space. Extensive experiments show that SpaceMind++ achieves new state-of-the-art performance on VSI-Bench. Furthermore, it demonstrates superior out-of-distribution generalization on SPBench, SITE-Bench, and SPAR-Bench, underscoring its robustness in unseen 3D environments.

cs.CV

Exact first passage time distribution for nonlinear chemical reaction networks II: monomolecular reactions and a A + B - C type of second-order reaction with arbitrary initial conditions

In biochemical reaction networks, the first passage time (FPT) of a reaction quantifies the time it takes for the reaction to first occur, from the initial state. While the mean FPT historically served as a summary metric, a far more comprehensive characterization of the dynamics of the network is contained within the complete FPT distribution. The relatively uncommon theoretical treatments of the FPT distribution that have been given in the past have been confined to linear systems, with zero and first-order processes. Recently, we presented theoretically exact solutions for the FPT distribution, within nonlinear systems involving two-particle collisions, such as A+B - C. Although this research yielded invaluable results, it was based upon the assumption of initial conditions in the form of a Poisson distribution. This somewhat restricts its relevance to real-world biochemical systems, which frequently display intricate behaviour and initial conditions that are non-Poisson in nature. Our current study extends prior analyses to accommodate arbitrary initial conditions, thereby expanding the applicability of our theoretical framework and providing a more adaptable tool for capturing the dynamics of biochemical reaction networks.

q-bio.MN

Exact first passage time distribution for second-order reactions in chemical networks

The first passage time (FPT) is a generic measure that quantifies when a random quantity reaches a specific state. We consider the FTP distribution in nonlinear stochastic biochemical networks, where obtaining exact solutions of the distribution is a challenging problem. Even simple two-particle collisions cause strong nonlinearities that hinder the theoretical determination of the full FPT distribution. Previous research has either focused on analyzing the mean FPT, which provides limited information about a system, or has considered time-consuming stochastic simulations that do not clearly expose causal relationships between parameters and the system's dynamics. This paper presents the first exact theoretical solution of the full FPT distribution in a broad class of chemical reaction networks involving $A + B \rightarrow C$ type of second-order reactions. Our exact theoretical method outperforms stochastic simulations, in terms of computational efficiency, and deviates from approximate analytical solutions. Given the prevalence of bimolecular reactions in biochemical systems, our approach has the potential to enhance the understanding of real-world biochemical processes.

q-bio.MN