arXiv subjects

Zichao Deng

Publications and source records attributed to Zichao Deng.

4 recordsLinked to original sources

arXiv2026

A Unified Heterogeneous Implementation of Numerical Atomic Orbitals-Based Real-Time TDDFT within the ABACUS Package

We present a unified heterogeneous computing framework for real-time time-dependent density functional theory (RT-TDDFT) based on numerical atomic orbitals (NAOs), implemented in the ABACUS package. We introduce three co-designed abstraction layers, including unified data containers, unified linear algebra operators, and unified grid integration interfaces. These layers collectively accelerate the two most demanding parts of NAO-based RT-TDDFT: explicit real-time wavefunction propagation and real-space grid operations such as Hamiltonian construction and force evaluation under external fields. We validate the method by computing optical properties for systems ranging from finite molecules to periodic solids, showing excellent agreement with standard benchmarks. Performance evaluations on bulk silicon demonstrate that a single GPU can achieve substantial wall-clock speedup over a fully utilized dual-socket CPU node. Furthermore, distributed multi-GPU strong-scaling tests confirm high parallel efficiency over tens of GPUs. This work establishes a high-performance, portable platform for large-scale first-principles simulations of ultrafast electron dynamics.

cond-mat.mtrl-sci↗

arXiv2025

ABACUS: An Electronic Structure Analysis Package for the AI Era

ABACUS (Atomic-orbital Based Ab-initio Computation at USTC) is an open-source software for first-principles electronic structure calculations and molecular dynamics simulations. It mainly features density functional theory (DFT) and molecular dynamics functions and is compatible with both plane-wave basis sets and numerical atomic orbital basis sets. ABACUS serves as a platform that facilitates the integration of various electronic structure methods, such as Kohn-Sham DFT, stochastic DFT, orbital-free DFT, and real-time time-dependent DFT, etc. In addition, with the aid of high-performance computing, ABACUS is designed to perform efficiently and provide massive amounts of first-principles data for generating general-purpose machine learning potentials, such as DPA models. Furthermore, ABACUS serves as an electronic structure platform that interfaces with several AI-assisted algorithms and packages, such as DeePKS-kit, DeePMD, DP-GEN, DeepH, DeePTB, HamGNN, etc.

cond-mat.mtrl-sci↗

arXiv2024

GPU Acceleration of Numerical Atomic Orbitals-Based Density Functional Theory Algorithms within the ABACUS package

With the fast developments of high-performance computing, first-principles methods based on quantum mechanics play a significant role in materials research, serving as fundamental tools for predicting and analyzing various properties of materials. However, the inherent complexity and substantial computational demands of first-principles algorithms, such as density functional theory, limit their use in larger systems. The rapid development of heterogeneous computing, particularly General-Purpose Graphics Processing Units (GPGPUs), has heralded new prospects for enhancing the performance and cost-effectiveness of first-principles algorithms. We utilize GPGPUs to accelerate the electronic structure algorithms in Atomic-orbital Based Ab-initio Computation at USTC (ABACUS), a first-principles computational package based on the linear combination of atomic orbitals (LCAO) basis set. We design algorithms on GPGPU to efficiently construct and diagonalize the Hamiltonian of a given system, including the related force and stress calculations. The effectiveness of this computational acceleration has been demonstrated through calculations on twisted bilayer graphene with the system size up to 10,444 atoms.

cond-mat.mtrl-sci↗

arXiv2022

Federated Graph Neural Networks: Overview, Techniques and Challenges

With its capability to deal with graph data, which is widely found in practical applications, graph neural networks (GNNs) have attracted significant research attention in recent years. As societies become increasingly concerned with the need for data privacy protection, GNNs face the need to adapt to this new normal. Besides, as clients in Federated Learning (FL) may have relationships, more powerful tools are required to utilize such implicit information to boost performance. This has led to the rapid development of the emerging research field of federated graph neural networks (FedGNNs). This promising interdisciplinary field is highly challenging for interested researchers to grasp. The lack of an insightful survey on this topic further exacerbates the entry difficulty. In this paper, we bridge this gap by offering a comprehensive survey of this emerging field. We propose a 2-dimensional taxonomy of the FedGNNs literature: 1) the main taxonomy provides a clear perspective on the integration of GNNs and FL by analyzing how GNNs enhance FL training as well as how FL assists GNNs training, and 2) the auxiliary taxonomy provides a view on how FedGNNs deal with heterogeneity across FL clients. Through discussions of key ideas, challenges, and limitations of existing works, we envision future research directions that can help build more robust, explainable, efficient, fair, inductive, and comprehensive FedGNNs.

cs.DC↗