arXiv subjects

Zihan Xu

Publications and source records attributed to Zihan Xu.

At least 55 records · Page 3Linked to original sources

arXiv2024

Unleashing the Power of Data Tsunami: A Comprehensive Survey on Data Assessment and Selection for Instruction Tuning of Language Models

Instruction tuning plays a critical role in aligning large language models (LLMs) with human preference. Despite the vast amount of open instruction datasets, naively training a LLM on all existing instructions may not be optimal and practical. To pinpoint the most beneficial datapoints, data assessment and selection methods have been proposed in the fields of natural language processing (NLP) and deep learning. However, under the context of instruction tuning, there still exists a gap in knowledge on what kind of data evaluation metrics can be employed and how they can be integrated into the selection mechanism. To bridge this gap, we present a comprehensive review on existing literature of data assessment and selection especially for instruction tuning of LLMs. We systematically categorize all applicable methods into quality-based, diversity-based, and importance-based ones where a unified, fine-grained taxonomy is structured. For each category, representative methods are elaborated to describe the landscape of relevant research. In addition, comparison between the latest methods is conducted on their officially reported results to provide in-depth discussions on their limitations. Finally, we summarize the open challenges and propose the promosing avenues for future studies. All related contents are available at https://github.com/yuleiqin/fantastic-data-engineering.

cs.CV↗

arXiv2024

A MapReduce Approach to Effectively Utilize Long Context Information in Retrieval Augmented Language Models

While holding great promise for improving and facilitating healthcare, large language models (LLMs) struggle to produce up-to-date responses on evolving topics due to outdated knowledge or hallucination. Retrieval-augmented generation (RAG) is a pivotal innovation that improves the accuracy and relevance of LLM responses by integrating LLMs with a search engine and external sources of knowledge. However, the quality of RAG responses can be largely impacted by the rank and density of key information in the retrieval results, such as the "lost-in-the-middle" problem. In this work, we aim to improve the robustness and reliability of the RAG workflow in the medical domain. Specifically, we propose a map-reduce strategy, BriefContext, to combat the "lost-in-the-middle" issue without modifying the model weights. We demonstrated the advantage of the workflow with various LLM backbones and on multiple QA datasets. This method promises to improve the safety and reliability of LLMs deployed in healthcare domains.

cs.CL↗

arXiv2024

Deciphering genomic codes using advanced NLP techniques: a scoping review

Objectives: The vast and complex nature of human genomic sequencing data presents challenges for effective analysis. This review aims to investigate the application of Natural Language Processing (NLP) techniques, particularly Large Language Models (LLMs) and transformer architectures, in deciphering genomic codes, focusing on tokenization, transformer models, and regulatory annotation prediction. The goal of this review is to assess data and model accessibility in the most recent literature, gaining a better understanding of the existing capabilities and constraints of these tools in processing genomic sequencing data. Methods: Following Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines, our scoping review was conducted across PubMed, Medline, Scopus, Web of Science, Embase, and ACM Digital Library. Studies were included if they focused on NLP methodologies applied to genomic sequencing data analysis, without restrictions on publication date or article type. Results: A total of 26 studies published between 2021 and April 2024 were selected for review. The review highlights that tokenization and transformer models enhance the processing and understanding of genomic data, with applications in predicting regulatory annotations like transcription-factor binding sites and chromatin accessibility. Discussion: The application of NLP and LLMs to genomic sequencing data interpretation is a promising field that can help streamline the processing of large-scale genomic data while also providing a better understanding of its complex structures. It has the potential to drive advancements in personalized medicine by offering more efficient and scalable solutions for genomic analysis. Further research is also needed to discuss and overcome current limitations, enhancing model transparency and applicability.

q-bio.GN↗

arXiv2024

Environment Scan of Generative AI Infrastructure for Clinical and Translational Science

This study reports a comprehensive environmental scan of the generative AI (GenAI) infrastructure in the national network for clinical and translational science across 36 institutions supported by the Clinical and Translational Science Award (CTSA) Program led by the National Center for Advancing Translational Sciences (NCATS) of the National Institutes of Health (NIH) at the United States. With the rapid advancement of GenAI technologies, including large language models (LLMs), healthcare institutions face unprecedented opportunities and challenges. This research explores the current status of GenAI integration, focusing on stakeholder roles, governance structures, and ethical considerations by administering a survey among leaders of health institutions (i.e., representing academic medical centers and health systems) to assess the institutional readiness and approach towards GenAI adoption. Key findings indicate a diverse range of institutional strategies, with most organizations in the experimental phase of GenAI deployment. The study highlights significant variations in governance models, with a strong preference for centralized decision-making but notable gaps in workforce training and ethical oversight. Moreover, the results underscore the need for a more coordinated approach to GenAI governance, emphasizing collaboration among senior leaders, clinicians, information technology staff, and researchers. Our analysis also reveals concerns regarding GenAI bias, data security, and stakeholder trust, which must be addressed to ensure the ethical and effective implementation of GenAI technologies. This study offers valuable insights into the challenges and opportunities of GenAI integration in healthcare, providing a roadmap for institutions aiming to leverage GenAI for improved quality of care and operational efficiency.

cs.CY↗

arXiv2024

An In-Depth Investigation of LEO Satellite Topology Design Parameters

Low Earth Orbit (LEO) satellite networks are rapidly gaining traction today. Although several real-world deployments exist, our preliminary analysis of LEO topology performance with the soon-to-be operational Inter-Satellite Links (ISLs) reveals several interesting characteristics that are difficult to explain based on our current understanding of topologies. For example, a real-world satellite shell with a low density of satellites offers better latency performance than another shell with nearly double the number of satellites. In this work, we conduct an in-depth investigation of LEO satellite topology design parameters and their impact on network performance while using the ISLs. In particular, we focus on three design parameters: the number of orbits in a shell, the inclination of orbits, and the number of satellites per orbit. Through an extensive analysis of real-world and synthetic satellite configurations, we uncover several interesting properties of satellite topologies. Notably, there exist thresholds for the number of satellites per orbit and the number of orbits below which the latency performance degrades significantly. Moreover, network delay between a pair of traffic endpoints depends on the alignment of the satellite's orbit (Inclination) with the geographic locations of endpoints.

cs.NI↗

arXiv2024

Leveraging Open Knowledge for Advancing Task Expertise in Large Language Models

The cultivation of expertise for large language models (LLMs) to solve tasks of specific areas often requires special-purpose tuning with calibrated behaviors on the expected stable outputs. To avoid huge cost brought by manual preparation of instruction datasets and training resources up to hundreds of hours, the exploitation of open knowledge including a wealth of low rank adaptation (LoRA) models and instruction datasets serves as a good starting point. However, existing methods on model and data selection focus on the performance of general-purpose capabilities while neglecting the knowledge gap exposed in domain-specific deployment. In the present study, we propose to bridge such gap by introducing few human-annotated samples (i.e., K-shot) for advancing task expertise of LLMs with open knowledge. Specifically, we develop an efficient and scalable pipeline to cost-efficiently produce task experts where K-shot data intervene in selecting the most promising expert candidates and the task-relevant instructions. A mixture-of-expert (MoE) system is built to make the best use of individual-yet-complementary knowledge between multiple experts. We unveil the two keys to the success of a MoE system, 1) the abidance by K-shot, and 2) the insistence on diversity. For the former, we ensure that models that truly possess problem-solving abilities on K-shot are selected rather than those blind guessers. Besides, during data selection, instructions that share task-relevant contexts with K-shot are prioritized. For the latter, we highlight the diversity of constituting experts and that of the fine-tuning instructions throughout the model and data selection process. Extensive experimental results confirm the superiority of our approach over existing methods on utilization of open knowledge across various tasks. Our codes will be available at https://github.com/Yaphabates/Rocket.

cs.CV↗

arXiv2024

Sinkhorn Distance Minimization for Knowledge Distillation

Knowledge distillation (KD) has been widely adopted to compress large language models (LLMs). Existing KD methods investigate various divergence measures including the Kullback-Leibler (KL), reverse Kullback-Leibler (RKL), and Jensen-Shannon (JS) divergences. However, due to limitations inherent in their assumptions and definitions, these measures fail to deliver effective supervision when few distribution overlap exists between the teacher and the student. In this paper, we show that the aforementioned KL, RKL, and JS divergences respectively suffer from issues of mode-averaging, mode-collapsing, and mode-underestimation, which deteriorates logits-based KD for diverse NLP tasks. We propose the Sinkhorn Knowledge Distillation (SinKD) that exploits the Sinkhorn distance to ensure a nuanced and precise assessment of the disparity between teacher and student distributions. Besides, profit by properties of the Sinkhorn metric, we can get rid of sample-wise KD that restricts the perception of divergence in each teacher-student sample pair. Instead, we propose a batch-wise reformulation to capture geometric intricacies of distributions across samples in the high-dimensional space. Comprehensive evaluation on GLUE and SuperGLUE, in terms of comparability, validity, and generalizability, highlights our superiority over state-of-the-art methods on all kinds of LLMs with encoder-only, encoder-decoder, and decoder-only architectures.

cs.LG↗

arXiv2023

SoftCLIP: Softer Cross-modal Alignment Makes CLIP Stronger

During the preceding biennium, vision-language pre-training has achieved noteworthy success on several downstream tasks. Nevertheless, acquiring high-quality image-text pairs, where the pairs are entirely exclusive of each other, remains a challenging task, and noise exists in the commonly used datasets. To address this issue, we propose SoftCLIP, a novel approach that relaxes the strict one-to-one constraint and achieves a soft cross-modal alignment by introducing a softened target, which is generated from the fine-grained intra-modal self-similarity. The intra-modal guidance is indicative to enable two pairs have some local similarities and model many-to-many relationships between the two modalities. Besides, since the positive still dominates in the softened target distribution, we disentangle the negatives in the distribution to further boost the relation alignment with the negatives in the cross-modal learning. Extensive experiments demonstrate the effectiveness of SoftCLIP. In particular, on ImageNet zero-shot classification task, using CC3M/CC12M as pre-training dataset, SoftCLIP brings a top-1 accuracy improvement of 6.8%/7.2% over the CLIP baseline.

cs.CV↗

arXiv2023

Towards Robust Text Retrieval with Progressive Learning

Retrieval augmentation has become an effective solution to empower large language models (LLMs) with external and verified knowledge sources from the database, which overcomes the limitations and hallucinations of LLMs in handling up-to-date and domain-specific information. However, existing embedding models for text retrieval usually have three non-negligible limitations. First, the number and diversity of samples in a batch are too restricted to supervise the modeling of textual nuances at scale. Second, the high proportional noise are detrimental to the semantic correctness and consistency of embeddings. Third, the equal treatment to easy and difficult samples would cause sub-optimum convergence of embeddings with poorer generalization. In this paper, we propose the PEG, a progressively learned embeddings for robust text retrieval. Specifically, we increase the training in-batch negative samples to 80,000, and for each query, we extracted five hard negatives. Concurrently, we incorporated a progressive learning mechanism, enabling the model to dynamically modulate its attention to the samples throughout the entire training process. Additionally, PEG is trained on more than 100 million data, encompassing a wide range of domains (e.g., finance, medicine, and tourism) and covering various tasks (e.g., question-answering, machine reading comprehension, and similarity matching). Extensive experiments conducted on C-MTEB and DuReader demonstrate that PEG surpasses state-of-the-art embeddings in retrieving true positives, highlighting its significant potential for applications in LLMs. Our model is publicly available at https://huggingface.co/TownsWu/PEG.

cs.IR↗

arXiv2023

Exploring Artistic Visualization of Physiological Signals for Mindfulness and Relaxation: A Pilot Study

Mindfulness and relaxation techniques for mental health are increasingly being explored in the human-computer interaction community. Physiological signals and their visualization have often been exploited together in a form of biofeedback with other intervention methods. Here, we aim to contribute to the body of existing work on biofeedback interfaces for mindfulness, with a particular focus on incorporating artistic effects into physiological signal visualization. With an implemented artistic biofeedback interface, we conduct a pilot study where 10 participants attend stress-induction sessions followed by two biofeedback mindfulness sessions: classic biofeedback and artistic visualization. The result demonstrates that artistic visualization-driven biofeedback significantly improves the effectiveness of biofeedback in helping users feel relaxed in comparison with a classic graphical form of biofeedback. Also, it shows that the artistic effect makes it easy to understand what biofeedback represents. Future work includes exploring how advanced physiological computing methods can improve its efficiency and performance.

cs.HC↗

arXiv2023

Devil in the Number: Towards Robust Multi-modality Data Filter

In order to appropriately filter multi-modality data sets on a web-scale, it becomes crucial to employ suitable filtering methods to boost performance and reduce training costs. For instance, LAION papers employs the CLIP score filter to select data with CLIP scores surpassing a certain threshold. On the other hand, T-MARS achieves high-quality data filtering by detecting and masking text within images and then filtering by CLIP score. Through analyzing the dataset, we observe a significant proportion of redundant information, such as numbers, present in the textual content. Our experiments on a subset of the data unveil the profound impact of these redundant elements on the CLIP scores. A logical approach would involve reevaluating the CLIP scores after eliminating these influences. Experimentally, our text-based CLIP filter outperforms the top-ranked method on the ``small scale" of DataComp (a data filtering benchmark) on ImageNet distribution shifts, achieving a 3.6% performance improvement. The results also demonstrate that our proposed text-masked filter outperforms the original CLIP score filter when selecting the top 40% of the data. The impact of numbers on CLIP and their handling provide valuable insights for improving the effectiveness of CLIP training, including language rewrite techniques.

cs.LG↗

arXiv2022

SiMaN: Sign-to-Magnitude Network Binarization

Binary neural networks (BNNs) have attracted broad research interest due to their efficient storage and computational ability. Nevertheless, a significant challenge of BNNs lies in handling discrete constraints while ensuring bit entropy maximization, which typically makes their weight optimization very difficult. Existing methods relax the learning using the sign function, which simply encodes positive weights into +1s, and -1s otherwise. Alternatively, we formulate an angle alignment objective to constrain the weight binarization to {0,+1} to solve the challenge. In this paper, we show that our weight binarization provides an analytical solution by encoding high-magnitude weights into +1s, and 0s otherwise. Therefore, a high-quality discrete solution is established in a computationally efficient manner without the sign function. We prove that the learned weights of binarized networks roughly follow a Laplacian distribution that does not allow entropy maximization, and further demonstrate that it can be effectively solved by simply removing the $\ell_2$ regularization during network training. Our method, dubbed sign-to-magnitude network binarization (SiMaN), is evaluated on CIFAR-10 and ImageNet, demonstrating its superiority over the sign-based state-of-the-arts. Our source code, experimental settings, training logs and binary models are available at https://github.com/lmbxmu/SiMaN.

cs.CV↗

arXiv2022

PyramidCLIP: Hierarchical Feature Alignment for Vision-language Model Pretraining

Large-scale vision-language pre-training has achieved promising results on downstream tasks. Existing methods highly rely on the assumption that the image-text pairs crawled from the Internet are in perfect one-to-one correspondence. However, in real scenarios, this assumption can be difficult to hold: the text description, obtained by crawling the affiliated metadata of the image, often suffers from the semantic mismatch and the mutual compatibility. To address these issues, we introduce PyramidCLIP, which constructs an input pyramid with different semantic levels for each modality, and aligns visual elements and linguistic elements in the form of hierarchy via peer-level semantics alignment and cross-level relation alignment. Furthermore, we soften the loss of negative samples (unpaired samples) so as to weaken the strict constraint during the pre-training stage, thus mitigating the risk of forcing the model to distinguish compatible negative pairs. Experiments on five downstream tasks demonstrate the effectiveness of the proposed PyramidCLIP. In particular, with the same amount of 15 million pre-training image-text pairs, PyramidCLIP exceeds CLIP on ImageNet zero-shot classification top-1 accuracy by 10.6%/13.2%/10.0% with ResNet50/ViT-B32/ViT-B16 based image encoder respectively. When scaling to larger datasets, PyramidCLIP achieves the state-of-the-art results on several downstream tasks. In particular, the results of PyramidCLIP-ResNet50 trained on 143M image-text pairs surpass that of CLIP using 400M data on ImageNet zero-shot classification task, significantly improving the data efficiency of CLIP.

cs.CV↗

arXiv2022

Spectral and Energy Efficiency of DCO-OFDM in Visible Light Communication Systems with Finite-Alphabet Inputs

The bound of the information transmission rate of direct current biased optical orthogonal frequency division multiplexing (DCO-OFDM) for visible light communication (VLC) with finite-alphabet inputs is yet unknown, where the corresponding spectral efficiency (SE) and energy efficiency (EE) stems out as the open research problems. In this paper, we derive the exact achievable rate of {the} DCO-OFDM system with finite-alphabet inputs for the first time. Furthermore, we investigate SE maximization problems of {the} DCO-OFDM system subject to both electrical and optical power constraints. By exploiting the relationship between the mutual information and the minimum mean-squared error, we propose a multi-level mercury-water-filling power allocation scheme to achieve the maximum SE. Moreover, the EE maximization problems of {the} DCO-OFDM system are studied, and the Dinkelbach-type power allocation scheme is developed for the maximum EE. Numerical results verify the effectiveness of the proposed theories and power allocation schemes.

cs.IT↗

arXiv2021

ReCU: Reviving the Dead Weights in Binary Neural Networks

Binary neural networks (BNNs) have received increasing attention due to their superior reductions of computation and memory. Most existing works focus on either lessening the quantization error by minimizing the gap between the full-precision weights and their binarization or designing a gradient approximation to mitigate the gradient mismatch, while leaving the "dead weights" untouched. This leads to slow convergence when training BNNs. In this paper, for the first time, we explore the influence of "dead weights" which refer to a group of weights that are barely updated during the training of BNNs, and then introduce rectified clamp unit (ReCU) to revive the "dead weights" for updating. We prove that reviving the "dead weights" by ReCU can result in a smaller quantization error. Besides, we also take into account the information entropy of the weights, and then mathematically analyze why the weight standardization can benefit BNNs. We demonstrate the inherent contradiction between minimizing the quantization error and maximizing the information entropy, and then propose an adaptive exponential scheduler to identify the range of the "dead weights". By considering the "dead weights", our method offers not only faster BNN training, but also state-of-the-art performance on CIFAR-10 and ImageNet, compared with recent methods. Code can be available at https://github.com/z-hXu/ReCU.

cs.LG↗

arXiv2021

ShadowGNN: Graph Projection Neural Network for Text-to-SQL Parser

Given a database schema, Text-to-SQL aims to translate a natural language question into the corresponding SQL query. Under the setup of cross-domain, traditional semantic parsing models struggle to adapt to unseen database schemas. To improve the model generalization capability for rare and unseen schemas, we propose a new architecture, ShadowGNN, which processes schemas at abstract and semantic levels. By ignoring names of semantic items in databases, abstract schemas are exploited in a well-designed graph projection neural network to obtain delexicalized representation of question and schema. Based on the domain-independent representations, a relation-aware transformer is utilized to further extract logical linking between question and schema. Finally, a SQL decoder with context-free grammar is applied. On the challenging Text-to-SQL benchmark Spider, empirical results show that ShadowGNN outperforms state-of-the-art models. When the annotated data is extremely limited (only 10\% training set), ShadowGNN gets over absolute 5\% performance gain, which shows its powerful generalization ability. Our implementation will be open-sourced at \url{https://github.com/WowCZ/shadowgnn}.

cs.CL↗

arXiv2020

Rotated Binary Neural Network

Binary Neural Network (BNN) shows its predominance in reducing the complexity of deep neural networks. However, it suffers severe performance degradation. One of the major impediments is the large quantization error between the full-precision weight vector and its binary vector. Previous works focus on compensating for the norm gap while leaving the angular bias hardly touched. In this paper, for the first time, we explore the influence of angular bias on the quantization error and then introduce a Rotated Binary Neural Network (RBNN), which considers the angle alignment between the full-precision weight vector and its binarized version. At the beginning of each training epoch, we propose to rotate the full-precision weight vector to its binary vector to reduce the angular bias. To avoid the high complexity of learning a large rotation matrix, we further introduce a bi-rotation formulation that learns two smaller rotation matrices. In the training stage, we devise an adjustable rotated weight vector for binarization to escape the potential local optimum. Our rotation leads to around 50% weight flips which maximize the information gain. Finally, we propose a training-aware approximation of the sign function for the gradient backward. Experiments on CIFAR-10 and ImageNet demonstrate the superiorities of RBNN over many state-of-the-arts. Our source code, experimental settings, training logs and binary models are available at https://github.com/lmbxmu/RBNN.

cs.CV↗

arXiv2020

CREDIT: Coarse-to-Fine Sequence Generation for Dialogue State Tracking

In dialogue systems, a dialogue state tracker aims to accurately find a compact representation of the current dialogue status, based on the entire dialogue history. While previous approaches often define dialogue states as a combination of separate triples ({\em domain-slot-value}), in this paper, we employ a structured state representation and cast dialogue state tracking as a sequence generation problem. Based on this new formulation, we propose a {\bf C}oa{\bf R}s{\bf E}-to-fine {\bf DI}alogue state {\bf T}racking ({\bf CREDIT}) approach. Taking advantage of the structured state representation, which is a marked language sequence, we can further fine-tune the pre-trained model (by supervised learning) by optimizing natural language metrics with the policy gradient method. Like all generative state tracking methods, CREDIT does not rely on pre-defined dialogue ontology enumerating all possible slot values. Experiments demonstrate our tracker achieves encouraging joint goal accuracy for the five domains in MultiWOZ 2.0 and MultiWOZ 2.1 datasets.

cs.CL↗