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Zijie Liu

Publications and source records attributed to Zijie Liu.

At least 19 recordsLinked to original sources

DrugReason: Dynamic Multi-View Reasoning over Knowledge Graph and Language Evidence for Drug Repurposing

Drug repurposing aims to identify new therapeutic uses for existing compounds and, compared with de novo drug discovery, offers a faster and more cost-effective path to clinical translation. However, the space of candidate drug-disease pairs is enormous and their underlying relationships often depend on complex multi-hop biological mechanisms, making it difficult to reliably predict which pairs represent true therapeutic relationships. Existing approaches tackle this from two directions: knowledge graph-based methods organize curated biomedical evidence into structured relational networks for grounded multi-hop reasoning, while LLM-based methods leverage pretrained knowledge to generate flexible mechanistic rationales. Yet neither is sufficient alone - KGs are confined to observed graph structure while LLMs lack factual grounding and risk hallucination. To address this gap, we propose DrugReason, a multi-view reasoning framework that integrates grounded KG reasoning with LLM-generated mechanistic inference for drug repurposing. DrugReason adaptively routes diverse reasoning paths to specialized experts conditioned on the query context, while a cross-expert distillation objective enables knowledge sharing without sacrificing expert specialization. Experiments on PharmaDB, DDInter, and DrugBank show that DrugReason improves average performance over strong single-view reasoning baselines and achieves competitive or superior results compared with graph-based alternatives, while providing interpretable routing-based predictions.

cs.LG

When Retain Constraints Conflict: Mitigating Forget-Retain Interference in Tabular Data

Machine unlearning aims to remove the influence of designated training data while preserving model utility, but its behavior on tabular data remains underexplored. This gap is important because tabular prediction is widely used in high-stakes domains and is increasingly adapted to language models through record serialization and schema-aware prompting. We identify a key challenge that distinguishes tabular unlearning from unlearning in free-form text or other modalities: schema-induced forget-retain overlap. In serialized tabular data, records share fixed column-name/value slots, similar attribute ranges, and common output spaces. Consequently, a forget row may have nearby retain rows that rely on the same high-signal attributes, causing retain preservation to oppose the update required for forgetting. Motivated by this failure mode, we propose Conflict-Aware Unlearning (CAU), a schema-aware approach that reduces forget-retain interference by relaxing preservation constraints on retained rows that most conflict with the forget set. Across sample-level and feature-level unlearning on clinical and non-medical tabular tasks, CAU more closely matches a retraining oracle while maintaining predictive utility and retain-region behavior. Our results show that reliable tabular LLM unlearning depends not only on the forgetting objective, but also on how retain constraints are constructed.

cs.LG

Dual-Faraday-laser-pumped cesium beam clock with $7.7\times 10^{-13}/\sqrt\tau$ frequency stability

Compact cesium beam clocks are major frequency references for deployable timing systems. However, further improvement of their short-term frequency stability is limited by the clock signal-to-noise ratio (SNR). Although two-laser optical pumping can increase the effective atomic utilization, the achievable clock SNR has long been limited by laser-induced frequency-to-amplitude noise conversion. Here, we demonstrate a compact dual-Faraday-laser-pumped (DFP) Cs beam clock enabled by a low-frequency-noise atom-referenced laser architecture. The intracavity Faraday anomalous dispersion optical filter provides inherent alignment to the Cs D$_2$ resonances, while modulation transfer spectroscopy offers suppressed frequency noise and drift. The resulting laser system supports robust turnkey operation with a Lorentzian linewidth of 2.12 kHz. The DFP Cs clock achieves a clock SNR of 46,365 in a 1-Hz bandwidth and a fractional Allan deviation of $7.7\times 10^{-13}/\sqrt\tau$ , with Hadamard deviation reaching $7.7\times 10^{-15}$ at 10,000 s. This work pushes the fractional frequency stability of a compact Cs beam clock into the $10^{-13}/\sqrt\tau$ regime, providing a pathway toward high-performance Cs frequency references for field-deployable precision timing, navigation, and synchronization.

physics.atom-ph

Stochastic Meta-Unlearning: Bridging Language Backbone and Multimodal Unlearning

Machine unlearning for vision-language models (VLMs) remains underexplored. Unlike language models, VLMs combine a language backbone with visual components, which makes unlearning more complex. There is a surprising phenomenon when moving from single-modality unlearning to VLM unlearning: a target forgotten by the standalone language backbone can still be recovered when image information is given to the full VLM. This shows that text-only feedback is not enough for reliable VLM unlearning. Motivated by this observation, we propose Stochastic Meta-Unlearning (SMU), a bilevel framework that uses VLM-level feedback to learn an unlearning-ready initialization. In the inner loop, SMU applies a few unlearning steps to the language backbone using text data. In the outer loop, SMU recomposes the updated backbone with the frozen VLM and evaluates forgetting and utility at the VLM level. This design makes the unlearning update aware of the final multimodal behavior, while still keeping the update local to the language backbone. Experiments on two VLMs, two multimodal meme datasets, and three baselines show that SMU achieves the best overall forget-retain trade-off. Compared with the strongest baseline for each metric, SMU reduces average Forget accuracy by 10.52 points and improves average Retain and Test accuracy by 20.10 and 17.01 points, respectively. More importantly, SMU also transfers to new forgetting targets and to different meta-test unlearning methods. These results suggest that VLM-level feedback can make language-backbone unlearning more reliable and more transferable for VLMs.

cs.CL

RAVEN: Agentic RAG for Automated Vulnerability Repair

Automated vulnerability repair has emerged as a promising direction to mitigate the growing number of software vulnerabilities. Recent advances in Large Language Models (LLMs) have further accelerated research in automated repair. However, existing frameworks remain largely restricted to memory-related vulnerabilities and locally repairable vulnerability settings, leaving generalization to unseen vulnerability types underexplored. Their evaluations are often limited to a single programming language, and largely rely on proprietary models. In this paper, we propose RAVEN, a scalable, efficient and autonomous framework that integrates an agentic retrieval-augmented generation (RAG) pipeline with controlled iterative repair in a unified framework. The framework utilizes open-source LLMs in a fully locally deployable setting with limited GPU requirements, while building a multi-faceted retrieval pipeline to retrieve historically relevant vulnerability fixes and guide the patch generation. In addition, RAVEN introduces a dedicated Curator Agent that retrieves cross-file dependencies from the target repository, to fix complex vulnerabilities that cannot be addressed using local vulnerable code alone. We evaluate RAVEN on 160 real-world CVE vulnerabilities across diverse vulnerability types, two programming languages, unseen CWE categories, and out-of-distribution settings. RAVEN achieves an overall repair success rate of 83.13%, outperforming all existing state-of-the-art repair frameworks, while also demonstrating strong generalization capabilities and maintaining the repair cost negligible.

cs.CR

Holo-World: Unified Camera, Object and Weather Control for Video World Model

Video world models are moving toward preserving an observed world under controllable camera and object motion while allowing its environmental state to change. Yet these controls remain isolated, and weather generation typically relies on a source video or reconstructed scene that already specifies future structure. We study a first-frame-anchored source-to-state setting, where the model starts from a single image and follows explicit camera and object controls and an optional weather instruction, then generates a video that either preserves the source world or transfers it to a target weather state. To address these challenges, we first build HoloStateData, a state video dataset that turns diverse videos into unified control samples for camera, object, and weather supervision. Second, we introduce Holo-World, a unified controllable video world model that jointly controls the scene from a single image. Its Unified Scene Adapter factorizes world preservation and weather transfer into distinct parameter subspaces, using rendered background, geometry buffers, and object controls to maintain controlled scene structure while modeling weather-dependent appearance and particle effects. Additionally, Scene-Weather Decomposed CFG guides scene and weather residuals separately, strengthening target weather effects without over-amplifying the full condition. Quantitative and qualitative experiments demonstrate that Holo-World maintains precise camera and object controls with consistent scene structure while transferring scenes into diverse target weather states, outperforming video-to-video weather editing baselines on weather-state generation. Our project page is available at https://xiangchenyin.github.io/Holo-World/

cs.CV

GEMQ: Global Expert-Level Mixed-Precision Quantization for MoE LLMs

Mixture-of-Experts Large Language Models (MoE-LLMs) achieve strong performance but incur substantial memory overhead due to massive expert parameters. Mixed-precision quantization mitigates this cost by allocating expert-wise bit-widths based on their importance, approaching the accuracy-memory Pareto frontier and enabling extreme low-bit quantization. However, existing methods rely on layer-wise importance estimation and overlook router shifts induced by quantization, resulting in suboptimal allocation and routing. In this work, we propose Global Expert-level Mixed-precision Quantization (GEMQ) to overcome these limitations via (1) a global linear-programming formulation that captures model-wide expert importance based on quantization error analysis, and (2) efficient router fine-tuning to adapt routing to quantized experts. These components are integrated into a progressive quantization framework that iteratively refines importance estimation and allocation. Experiments demonstrate that GEMQ significantly reduces memory and accelerates inference with minimal accuracy degradation. Source code is available at https://github.com/jndeng/GEMQ .

cs.LG

Fairness for distribution network operations and planning

The incorporation of fairness into the distribution network (DN) planning and operation has become a key goal of recent studies. The cost of implementing fairness, denominated the price of fairness (PoF), covers the efficiency that is renounced for attaining social cohesion through fair outcomes. Locational disparity makes fairness schemes emerge to level the consumers playing field. However, fairness encompasses a range of notions. From egalitarian to merit-based criteria, various metrics are implemented as a tool for measuring equitable utility distribution. These have different mathematical complexities, from linear to non-linear programming cases, which affect their overall applicability. Hence, this study compiles the overarching fairness notions and metrics, reviewing how these affect stakeholders and the inherent mathematical optimisation in resource allocation problems. The aim is to support consistent and transparent planning and decision-making within DN operations.

cs.AI

SWE-Next: Scalable Real-World Software Engineering Tasks for Agents

Executable software engineering data is valuable for training SWE agents, but scaling it remains difficult for two reasons: only a small fraction of real repository changes yield verifiable, high-signal task instances, and naively building repository-specific environments quickly becomes the dominant systems cost. We present SWE-Next, an execution-grounded framework for scalable SWE task and trajectory collection. On the data side, SWE-Next mines real merged pull requests, executes candidate base/merged commit pairs, and retains only those that produce strict test improvements without regressions, yielding self-verifying instances. It also applies strict submission gating so that collected trajectories remain evidence-driven rather than speculative. On the systems side, SWE-Next introduces reusable repo-quarter profiles, which reuse the same environment across nearby commits in time while keeping each task run separate and reproducible. Using only 30 hours and 639GB of environment storage, SWE-Next processes 3,971 seed repositories and 102,582 candidate commit pairs mined from real merged PRs to construct a dataset of 2,308 self-verifying instances. Experiments show that SWE-Next improves downstream pass@1 with fewer or comparable training trajectories, indicating that its gains come not from a stronger trajectory generator, but from higher-signal execution-grounded supervision and more efficient data collection.

cs.SE

A Replicate-and-Quantize Strategy for Plug-and-Play Load Balancing of Sparse Mixture-of-Experts LLMs

Sparse Mixture-of-Experts (SMoE) architectures are increasingly used to scale large language models efficiently, delivering strong accuracy under fixed compute budgets. However, SMoE models often suffer from severe load imbalance across experts, where a small subset of experts receives most tokens while others are underutilized. Prior work has focused mainly on training-time solutions such as routing regularization or auxiliary losses, leaving inference-time behavior, which is critical for deployment, less explored. We present a systematic analysis of expert routing during inference and identify three findings: (i) load imbalance persists and worsens with larger batch sizes, (ii) selection frequency does not reliably reflect expert importance, and (iii) overall expert workload and importance can be estimated using a small calibration set. These insights motivate inference-time mechanisms that rebalance workloads without retraining or router modification. We propose Replicate-and-Quantize (R&Q), a training-free and near-lossless framework for dynamic workload rebalancing. In each layer, heavy-hitter experts are replicated to increase parallel capacity, while less critical experts and replicas are quantized to remain within the original memory budget. We also introduce a Load-Imbalance Score (LIS) to measure routing skew by comparing heavy-hitter load to an equal allocation baseline. Experiments across representative SMoE models and benchmarks show up to 1.4x reduction in imbalance with accuracy maintained within +/-0.6%, enabling more predictable and efficient inference.

cs.LG

Dialogue is Better Than Monologue: Instructing Medical LLMs via Strategical Conversations

Current medical AI systems often fail to replicate real-world clinical reasoning, as they are predominantly trained and evaluated on static text and question-answer tasks. These tuning methods and benchmarks overlook critical aspects like evidence-based reasoning and handling distracting information. To bridge this gap, we introduce a novel benchmark that simulates real-world diagnostic scenarios, integrating noise and difficulty levels aligned with USMLE standards. Moreover, we explore dialogue-based fine-tuning, which transforms static datasets into conversational formats to better capture iterative reasoning processes. Experiments show that dialogue-tuned models outperform traditional methods, with improvements of $9.64\%$ in multi-round reasoning scenarios and $6.18\%$ in accuracy in a noisy environment. Our findings highlight dialogue tuning as a promising approach for advancing clinically aligned and robust medical AI systems.

cs.CL

TMS: Trajectory-Mixed Supervision for Reward-Free, On-Policy SFT

Reinforcement Learning (RL) and Supervised Fine-Tuning (SFT) are the two dominant paradigms for enhancing Large Language Model (LLM) performance on downstream tasks. While RL generally preserves broader model capabilities (retention) better than SFT, it comes with significant costs: complex reward engineering, instability, and expensive on-policy sampling. In contrast, SFT is efficient but brittle, often suffering from catastrophic forgetting due to $\textbf{Supervision Mismatch}$: the divergence between the model's evolving policy and static training labels. We address this trade-off with $\textbf{Trajectory-Mixed Supervision (TMS)}$, a reward-free framework that approximates the on-policy benefits of RL by creating a dynamic curriculum from the model's own historical checkpoints. TMS minimizes $\textit{Policy-Label Divergence (PLD)}$, preventing the mode collapse that drives forgetting in standard SFT. Experiments across reasoning (MATH, GSM8K) and instruction-following benchmarks demonstrate that TMS effectively shifts the accuracy--retention Pareto frontier. While RL remains the gold standard for retention, TMS significantly outperforms standard and iterative SFT, bridging the gap to RL without requiring reward models or verifiers. Mechanistic analysis confirms that PLD drift accurately predicts forgetting and that TMS successfully mitigates this drift.

cs.LG

Model Editing as a Double-Edged Sword: Steering Agent Ethical Behavior Toward Beneficence or Harm

Agents based on Large Language Models (LLMs) have demonstrated strong capabilities across a wide range of tasks. However, deploying LLM-based agents in high-stakes domains comes with significant safety and ethical risks. Unethical behavior by these agents can directly result in serious real-world consequences, including physical harm and financial loss. To efficiently steer the ethical behavior of agents, we frame agent behavior steering as a model editing task, which we term Behavior Editing. Model editing is an emerging area of research that enables precise and efficient modifications to LLMs while preserving their overall capabilities. To systematically study and evaluate this approach, we introduce BehaviorBench, a multi-tier benchmark grounded in psychological moral theories. This benchmark supports both the evaluation and editing of agent behaviors across a variety of scenarios, with each tier introducing more complex and ambiguous scenarios. We first demonstrate that Behavior Editing can dynamically steer agents toward the target behavior within specific scenarios. Moreover, Behavior Editing enables not only scenario-specific local adjustments but also more extensive shifts in an agent's global moral alignment. We demonstrate that Behavior Editing can be used to promote ethical and benevolent behavior or, conversely, to induce harmful or malicious behavior. Through extensive evaluations of agents built on frontier LLMs, BehaviorBench validates the effectiveness of behavior editing across a wide range of models and scenarios. Our findings offer key insights into a new paradigm for steering agent behavior, highlighting both the promise and perils of Behavior Editing.

cs.CL

Can GRPO Help LLMs Transcend Their Pretraining Origin?

Reinforcement Learning with Verifiable Rewards (RLVR), primarily driven by the Group Relative Policy Optimization (GRPO) algorithm, is a leading approach for enhancing the reasoning abilities of Large Language Models (LLMs). Despite its wide adoption, GRPO's gains are often inconsistent; for instance, a model may show significant improvement in one reasoning domain, like mathematics, yet remain stagnant in another, such as medicine. This inconsistency raises a critical question: under what conditions does GRPO improve reasoning and generalize out-of-distribution (OOD)? We investigate this from a data distribution perspective. We first prove theoretically that GRPO is a conservative reweighting scheme, bounded by the base model's distribution and thus unable to discover completely novel solutions. We further validate this in carefully designed controlled studies by training transformers from scratch, evaluating generalization across reasoning depth, input length, token representation, and compositionality. Our results provide a principled explanation for GRPO's boundaries: OOD improvement emerges only when the target task aligns with the model's pretrained biases, while gains on in-distribution (ID) tasks diminish as performance saturates. This reframes GRPO not as a universal reasoning enhancer but as a tool that sharpens pretraining biases. Our findings motivate future development of algorithms that can expand a model's capabilities beyond its pretraining origin.

cs.LG

FIER: Fine-Grained and Efficient KV Cache Retrieval for Long-context LLM Inference

The Key-Value (KV) cache reading latency increases significantly with context lengths, hindering the efficiency of long-context LLM inference. To address this, previous works propose retaining a small fraction of KV cache based on token importance. For example, KV eviction uses static heuristics to retain tokens, while KV retrieval dynamically selects query-relevant tokens for more adaptive cache management. However, we observe that important tokens are often sparsely distributed across the long context. This sparsity makes existing page-level KV retrieval inaccurate, as each page may include irrelevant tokens and miss critical ones. In this work, we propose Fier, a \underline{Fi}ne-Grained and \underline{E}fficient KV cache \underline{R}etrieval method. Fier uses 1-bit quantized keys to estimate the importance of each token, resulting in efficient and precise retrieval. Experiments show that Fier matches full KV performance using only 11\% of the cache budget across various long-context tasks, reducing decoding latency by 1.2$\times$ to 1.5$\times$.Code is available at https://github.com/SimWangArizona/FIER

cs.DB

DT-UFC: Universal Large Model Feature Coding via Peaky-to-Balanced Distribution Transformation

Like image coding in visual data transmission, feature coding is essential for the distributed deployment of large models by significantly reducing transmission and storage burden. However, prior studies have mostly targeted task- or model-specific scenarios, leaving the challenge of universal feature coding across diverse large models largely unexplored. In this paper, we present the first systematic study on universal feature coding for large models. The key challenge lies in the inherently diverse and distributionally incompatible nature of features extracted from different models. For example, features from DINOv2 exhibit highly peaky, concentrated distributions, while those from Stable Diffusion 3 (SD3) are more dispersed and uniform. This distributional heterogeneity severely hampers both compression efficiency and cross-model generalization. To address this, we propose a learned peaky-to-balanced distribution transformation, which reshapes highly skewed feature distributions into a common, balanced target space. This transformation is non-uniform, data-driven, and plug-and-play, enabling effective alignment of heterogeneous distributions without modifying downstream codecs. With this alignment, a universal codec trained on the balanced target distribution can effectively generalize to features from different models and tasks. We validate our approach on three representative large models (LLaMA3, DINOv2, and SD3) across multiple tasks and modalities. Extensive experiments show that our method achieves notable improvements in both compression efficiency and cross-model generalization over task-specific baselines. All source code has been made available at https://github.com/chansongoal/DT-UFC.

cs.MM

Velocity-comb modulation transfer spectroscopy

Sub-Doppler laser spectroscopy is a crucial technique for laser frequency stabilization, playing a significant role in atomic physics, precision measurement, and quantum communication. However, recent efforts to improve frequency stability appear to have reached a bottleneck, as they primarily focus on external technical approaches while neglecting the fundamental issue of low atomic utilization (< 1%), caused by only near-zero transverse velocity atoms involved in the transition. Here, we propose a velocity-comb modulation transfer spectroscopy (MTS) solution that takes advantage of the velocity-selective resonance effect of multi-frequency comb lasers to enhance the utilization of non-zero-velocity atoms. In the probe-pump configuration, each pair of counter-propagating lasers interacts with atoms from different transverse velocity-comb groups, independently contributing to the spectral amplitude and signal-to-noise ratio. Preliminary proof-of-principle results show that the frequency stability of the triple-frequency laser is optimized by nearly a factor of \sqrt{3} compared to the single-frequency laser, consistent with theoretical expectations. With more frequency comb components, MTS-stabilized lasers are expected to achieve order-of-magnitude breakthroughs in frequency stability, taking an important step toward next-generation compact optical clocks. This unique method can also be widely applied to any quantum system with a wide velocity distribution, inspiring innovative advances in numerous fields with a fresh perspective.

physics.atom-ph

PaMMA-Net: Plasmas magnetic measurement evolution based on data-driven incremental accumulative prediction

An accurate evolution model is crucial for effective control and in-depth study of fusion plasmas. Evolution methods based on physical models often encounter challenges such as insufficient robustness or excessive computational costs. Given the proven strong fitting capabilities of deep learning methods across various fields, including plasma research, this paper introduces a deep learning-based magnetic measurement evolution method named PaMMA-Net (Plasma Magnetic Measurements Incremental Accumulative Prediction Network). This network is capable of evolving magnetic measurements in tokamak discharge experiments over extended periods or, in conjunction with equilibrium reconstruction algorithms, evolving macroscopic parameters such as plasma shape. Leveraging a incremental prediction approach and data augmentation techniques tailored for magnetic measurements, PaMMA-Net achieves superior evolution results compared to existing studies. The tests conducted on real experimental data from EAST validate the high generalization capability of the proposed method.

physics.plasm-ph