arXiv subjects

Zixiao Dong

Publications and source records attributed to Zixiao Dong.

3 recordsLinked to original sources

arXiv2026

From Weak Task Specifications to Scientific Extraction Agents: Optimizing Task Construction

Most methods that optimize LLM prompts and agent workflows assume that task-specific output schemas, extraction instructions, and evaluation criteria are predefined. For scientific extraction agents, however, a short task goal may not fully determine these components, while specifying them manually is costly. We study the upstream problem of constructing the task-specific configuration from a weak specification containing only a short goal and unannotated reference documents. Rather than treating automatic construction as a fixed preprocessing step, our framework constructs a task-specific schema, extraction instructions, and base training rubrics, then keeps schema construction and extraction instructions editable during optimization. Failure-focused updates concentrate textual-gradient feedback on lower-scoring documents, while training-time evaluation criteria adapt to recurring failures. On a heterogeneous-catalysis literature corpus, automatic construction remains improvable, and optimizing both schema construction and extraction instructions performs best across all four judge-rubric settings, with ablations and blinded human evaluation supporting the proposed formulation.

cs.CL↗

arXiv2026

Adapt Semantics, Not Structure: Few-Instance Schema Calibration for Scientific PDF Extraction

A well-designed extraction schema is not necessarily ready for reliable LLM execution. When only limited verified extractions are available, manually tuning hundreds of field definitions through trial and error is costly. We frame this problem as few-instance schema calibration: adapting the operational semantics of an existing schema from a few annotated documents while preserving its structural contract. We introduce CPSE, a contract-preserving semantic extraction framework that jointly calibrates extraction prompts and field-level semantic descriptions from a few gold annotations. CPSE decomposes the schema into an invariant structural contract and mutable field semantics, and further separates identity discovery from record completion using manifest-conditioned resolution. On expert-annotated polymer-science documents, CPSE improves extraction by 9.93 points over an execution-matched baseline, with consistent gains under an independent judge and in a blinded expert audit. These results show that CPSE enables low-resource schema execution while preserving the output structure required downstream.

cs.CL↗

arXiv2026

Source-preserving alignment for robust evidence localization in scientific PDFS

Scientific information-extraction systems often return a claim with an evidence string, which users must locate in the original PDF. This is challenging because the extracted evidence and PDF text layer are different representations: line wrapping, Unicode variants, superscripts, citation markers, and fragmented items alter text sequences and geometry. We present a source-preserving alignment framework: normalize text for robust matching while preserving provenance for accurate localization. It aligns evidence with normalized page text, maps matches back to source-character spans, and renders only their geometry. When exact alignment fails, line-break-aware token alignment recovers supported spans while excluding unmatched noise. Experiments on 1,020 chemistry papers show that the framework achieves a 92.6\% quote-level automatic localization rate, compared with 43.6\% for text search and 19.1\% for a precomputed bounding-box baseline. Component ablation confirms distinct contributions from normalization and approximate token alignment, while human verification assesses the visual correctness of returned highlights. Overall, these results demonstrate that reliable evidence verification requires robust matching and precise localization within a shared source-preserving alignment representation.

cs.AI↗