arXiv subjects

Zofia Trstanova

Publications and source records attributed to Zofia Trstanova.

8 recordsLinked to original sources

arXiv2022

Multilingual Disinformation Detection for Digital Advertising

In today's world, the presence of online disinformation and propaganda is more widespread than ever. Independent publishers are funded mostly via digital advertising, which is unfortunately also the case for those publishing disinformation content. The question of how to remove such publishers from advertising inventory has long been ignored, despite the negative impact on the open internet. In this work, we make the first step towards quickly detecting and red-flagging websites that potentially manipulate the public with disinformation. We build a machine learning model based on multilingual text embeddings that first determines whether the page mentions a topic of interest, then estimates the likelihood of the content being malicious, creating a shortlist of publishers that will be reviewed by human experts. Our system empowers internal teams to proactively, rather than defensively, blacklist unsafe content, thus protecting the reputation of the advertisement provider.

cs.CL↗

arXiv2020

Machine learning force fields and coarse-grained variables in molecular dynamics: application to materials and biological systems

Machine learning encompasses a set of tools and algorithms which are now becoming popular in almost all scientific and technological fields. This is true for molecular dynamics as well, where machine learning offers promises of extracting valuable information from the enormous amounts of data generated by simulation of complex systems. We provide here a review of our current understanding of goals, benefits, and limitations of machine learning techniques for computational studies on atomistic systems, focusing on the construction of empirical force fields from ab-initio databases and the determination of reaction coordinates for free energy computation and enhanced sampling.

physics.comp-ph↗

arXiv2020

TATi-Thermodynamic Analytics ToolkIt: TensorFlow-based software for posterior sampling in machine learning applications

With the advent of GPU-assisted hardware and maturing high-efficiency software platforms such as TensorFlow and PyTorch, Bayesian posterior sampling for neural networks becomes plausible. In this article we discuss Bayesian parametrization in machine learning based on Markov Chain Monte Carlo methods, specifically discretized stochastic differential equations such as Langevin dynamics and extended system methods in which an ensemble of walkers is employed to enhance sampling. We provide a glimpse of the potential of the sampling-intensive approach by studying (and visualizing) the loss landscape of a neural network applied to the MNIST data set. Moreover, we investigate how the sampling efficiency itself can be significantly enhanced through an ensemble quasi-Newton preconditioning method. This article accompanies the release of a new TensorFlow software package, the Thermodynamic Analytics ToolkIt, which is used in the computational experiments.

math.ST↗

arXiv2019

Local and Global Perspectives on Diffusion Maps in the Analysis of Molecular Systems

Diffusion maps approximate the generator of Langevin dynamics from simulation data. They afford a means of identifying the slowly-evolving principal modes of high-dimensional molecular systems. When combined with a biasing mechanism, diffusion maps can accelerate the sampling of the stationary Boltzmann-Gibbs distribution. In this work, we contrast the local and global perspectives on diffusion maps, based on whether or not the data distribution has been fully explored. In the global setting, we use diffusion maps to identify metastable sets and to approximate the corresponding committor functions of transitions between them. We also discuss the use of diffusion maps within the metastable sets, formalising the locality via the concept of the quasi-stationary distribution and justifying the convergence of diffusion maps within a local equilibrium. This perspective allows us to propose an enhanced sampling algorithm. We demonstrate the practical relevance of these approaches both for simple models and for molecular dynamics problems (alanine dipeptide and deca-alanine).

physics.data-an↗

arXiv2018

Langevin dynamics with general kinetic energies

We study Langevin dynamics with a kinetic energy different from the standard, quadratic one in order to accelerate the sampling of Boltzmann-Gibbs distributions. In particular, this kinetic energy can be non-globally Lipschitz, which raises issues for the stability of discretizations of the associated Langevin dynamics. We first prove the exponential convergence of the law of the continuous process to the Boltzmann-Gibbs measure by a hypocoercive approach, and characterize the asymptotic variance of empirical averages over trajectories. We next develop numerical schemes which are stable and of weak order two, by considering splitting strategies where the discretizations of the fluctuation/dissipation are corrected by a Metropolis procedure. We use the newly developped schemes for two applications: optimizing the shape of the kinetic energy for the so-called adaptively restrained Langevin dynamics (which considers perturbations of standard quadratic kinetic energies vanishing around the origin); and reducing the metastability of some toy models using non-globally Lipschitz kinetic energies.

cond-mat.stat-mech↗

arXiv2017

Diffusion maps tailored to arbitrary non-degenerate Ito processes

We present two generalizations of the popular diffusion maps algorithm. The first generalization replaces the drift term in diffusion maps, which is the gradient of the sampling density, with the gradient of an arbitrary density of interest which is known up to a normalization constant. The second generalization allows for a diffusion map type approximation of the forward and backward generators of general Ito diffusions with given drift and diffusion coefficients. We use the local kernels introduced by Berry and Sauer, but allow for arbitrary sampling densities. We provide numerical illustrations to demonstrate that this opens up many new applications for diffusion maps as a tool to organize point cloud data, including biased or corrupted samples, dimension reduction for dynamical systems, detection of almost invariant regions in flow fields, and importance sampling.

math.DS↗

arXiv2017

Estimating the speed-up of Adaptively Restrained Langevin Dynamics

We consider Adaptively Restrained Langevin dynamics, in which the kinetic energy function vanishes for small velocities. Properly parameterized, this dynamics makes it possible to reduce the computational complexity of updating inter-particle forces, and to accelerate the computation of ergodic averages of molecular simulations. In this paper, we analyze the influence of the method parameters on the total achievable speed-up. In particular, we estimate both the algorithmic speed-up, resulting from incremental force updates, and the influence of the change of the dynamics on the asymptotic variance. This allows us to propose a practical strategy for the parametrization of the method. We validate these theoretical results by representative numerical experiments.

cond-mat.stat-mech↗

arXiv2016

Error Analysis of Modified Langevin Dynamics

We consider Langevin dynamics associated with a modified kinetic energy vanishing for small momenta. This allows us to freeze slow particles, and hence avoid the re-computation of inter-particle forces, which leads to computational gains. On the other hand, the statistical error may increase since there are a priori more correlations in time. The aim of this work is first to prove the ergodicity of the modified Langevin dynamics (which fails to be hypoelliptic), and next to analyze how the asymptotic variance on ergodic averages depends on the parameters of the modified kinetic energy. Numerical results illustrate the approach, both for low-dimensional systems where we resort to a Galerkin approximation of the generator, and for more realistic systems using Monte Carlo simulations.

cond-mat.stat-mech↗