arXiv subjects

Zongyuan Ge

Publications and source records attributed to Zongyuan Ge.

156 records · Page 9Linked to original sources

arXiv2020

Melanoma Diagnosis with Spatio-Temporal Feature Learning on Sequential Dermoscopic Images

Existing studies for automated melanoma diagnosis are based on single-time point images of lesions. However, melanocytic lesions de facto are progressively evolving and, moreover, benign lesions can progress into malignant melanoma. Ignoring cross-time morphological changes of lesions thus may lead to misdiagnosis in borderline cases. Based on the fact that dermatologists diagnose ambiguous skin lesions by evaluating the dermoscopic changes over time via follow-up examination, in this study, we propose an automated framework for melanoma diagnosis using sequential dermoscopic images. To capture the spatio-temporal characterization of dermoscopic evolution, we construct our model in a two-stream network architecture which capable of simultaneously learning appearance representations of individual lesions while performing temporal reasoning on both raw pixels difference and abstract features difference. We collect 184 cases of serial dermoscopic image data, which consists of histologically confirmed 92 benign lesions and 92 melanoma lesions, to evaluate the effectiveness of the proposed method. Our model achieved AUC of 74.34%, which is ~8% higher than that of only using single images and ~6% higher than the widely used sequence learning model based on LSTM.

cs.CV↗

arXiv2020

Bridge the Domain Gap Between Ultra-wide-field and Traditional Fundus Images via Adversarial Domain Adaptation

For decades, advances in retinal imaging technology have enabled effective diagnosis and management of retinal disease using fundus cameras. Recently, ultra-wide-field (UWF) fundus imaging by Optos camera is gradually put into use because of its broader insights on fundus for some lesions that are not typically seen in traditional fundus images. Research on traditional fundus images is an active topic but studies on UWF fundus images are few. One of the most important reasons is that UWF fundus images are hard to obtain. In this paper, for the first time, we explore domain adaptation from the traditional fundus to UWF fundus images. We propose a flexible framework to bridge the domain gap between two domains and co-train a UWF fundus diagnosis model by pseudo-labelling and adversarial learning. We design a regularisation technique to regulate the domain adaptation. Also, we apply MixUp to overcome the over-fitting issue from incorrect generated pseudo-labels. Our experimental results on either single or both domains demonstrate that the proposed method can well adapt and transfer the knowledge from traditional fundus images to UWF fundus images and improve the performance of retinal disease recognition.

eess.IV↗

arXiv2020

ZSTAD: Zero-Shot Temporal Activity Detection

An integral part of video analysis and surveillance is temporal activity detection, which means to simultaneously recognize and localize activities in long untrimmed videos. Currently, the most effective methods of temporal activity detection are based on deep learning, and they typically perform very well with large scale annotated videos for training. However, these methods are limited in real applications due to the unavailable videos about certain activity classes and the time-consuming data annotation. To solve this challenging problem, we propose a novel task setting called zero-shot temporal activity detection (ZSTAD), where activities that have never been seen in training can still be detected. We design an end-to-end deep network based on R-C3D as the architecture for this solution. The proposed network is optimized with an innovative loss function that considers the embeddings of activity labels and their super-classes while learning the common semantics of seen and unseen activities. Experiments on both the THUMOS14 and the Charades datasets show promising performance in terms of detecting unseen activities.

cs.CV↗

arXiv2020

Adversarial Pulmonary Pathology Translation for Pairwise Chest X-ray Data Augmentation

Recent works show that Generative Adversarial Networks (GANs) can be successfully applied to chest X-ray data augmentation for lung disease recognition. However, the implausible and distorted pathology features generated from the less than perfect generator may lead to wrong clinical decisions. Why not keep the original pathology region? We proposed a novel approach that allows our generative model to generate high quality plausible images that contain undistorted pathology areas. The main idea is to design a training scheme based on an image-to-image translation network to introduce variations of new lung features around the pathology ground-truth area. Moreover, our model is able to leverage both annotated disease images and unannotated healthy lung images for the purpose of generation. We demonstrate the effectiveness of our model on two tasks: (i) we invite certified radiologists to assess the quality of the generated synthetic images against real and other state-of-the-art generative models, and (ii) data augmentation to improve the performance of disease localisation.

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arXiv2019

Geometry-constrained Car Recognition Using a 3D Perspective Network

We present a novel learning framework for vehicle recognition from a single RGB image. Unlike existing methods which only use attention mechanisms to locate 2D discriminative information, our work learns a novel 3D perspective feature representation of a vehicle, which is then fused with 2D appearance feature to predict the category. The framework is composed of a global network (GN), a 3D perspective network (3DPN), and a fusion network. The GN is used to locate the region of interest (RoI) and generate the 2D global feature. With the assistance of the RoI, the 3DPN estimates the 3D bounding box under the guidance of the proposed vanishing point loss, which provides a perspective geometry constraint. Then the proposed 3D representation is generated by eliminating the viewpoint variance of the 3D bounding box using perspective transformation. Finally, the 3D and 2D feature are fused to predict the category of the vehicle. We present qualitative and quantitative results on the vehicle classification and verification tasks in the BoxCars dataset. The results demonstrate that, by learning such a concise 3D representation, we can achieve superior performance to methods that only use 2D information while retain 3D meaningful information without the challenge of requiring a 3D CAD model.

cs.CV↗

arXiv2019

Improving Deep Lesion Detection Using 3D Contextual and Spatial Attention

Lesion detection from computed tomography (CT) scans is challenging compared to natural object detection because of two major reasons: small lesion size and small inter-class variation. Firstly, the lesions usually only occupy a small region in the CT image. The feature of such small region may not be able to provide sufficient information due to its limited spatial feature resolution. Secondly, in CT scans, the lesions are often indistinguishable from the background since the lesion and non-lesion areas may have very similar appearances. To tackle both problems, we need to enrich the feature representation and improve the feature discriminativeness. Therefore, we introduce a dual-attention mechanism to the 3D contextual lesion detection framework, including the cross-slice contextual attention to selectively aggregate the information from different slices through a soft re-sampling process. Moreover, we propose intra-slice spatial attention to focus the feature learning in the most prominent regions. Our method can be easily trained end-to-end without adding heavy overhead on the base detection network. We use DeepLesion dataset and train a universal lesion detector to detect all kinds of lesions such as liver tumors, lung nodules, and so on. The results show that our model can significantly boost the results of the baseline lesion detector (with 3D contextual information) but using much fewer slices.

cs.CV↗

arXiv2019

Training Data Independent Image Registration With GANs Using Transfer Learning And Segmentation Information

Registration is an important task in automated medical image analysis. Although deep learning (DL) based image registration methods out perform time consuming conventional approaches, they are heavily dependent on training data and do not generalize well for new images types. We present a DL based approach that can register an image pair which is different from the training images. This is achieved by training generative adversarial networks (GANs) in combination with segmentation information and transfer learning. Experiments on chest Xray and brain MR images show that our method gives better registration performance over conventional methods.

cs.CV↗

arXiv2018

Deep multiscale convolutional feature learning for weakly supervised localization of chest pathologies in X-ray images

Localization of chest pathologies in chest X-ray images is a challenging task because of their varying sizes and appearances. We propose a novel weakly supervised method to localize chest pathologies using class aware deep multiscale feature learning. Our method leverages intermediate feature maps from CNN layers at different stages of a deep network during the training of a classification model using image level annotations of pathologies. During the training phase, a set of \emph{layer relevance weights} are learned for each pathology class and the CNN is optimized to perform pathology classification by convex combination of feature maps from both shallow and deep layers using the learned weights. During the test phase, to localize the predicted pathology, the multiscale attention map is obtained by convex combination of class activation maps from each stage using the \emph{layer relevance weights} learned during the training phase. We have validated our method using 112000 X-ray images and compared with the state-of-the-art localization methods. We experimentally demonstrate that the proposed weakly supervised method can improve the localization performance of small pathologies such as nodule and mass while giving comparable performance for bigger pathologies e.g., Cardiomegaly

cs.CV↗

arXiv2018

Chest X-rays Classification: A Multi-Label and Fine-Grained Problem

The widely used ChestX-ray14 dataset addresses an important medical image classification problem and has the following caveats: 1) many lung pathologies are visually similar, 2) a variant of diseases including lung cancer, tuberculosis, and pneumonia are present in a single scan, i.e. multiple labels and 3) The incidence of healthy images is much larger than diseased samples, creating imbalanced data. These properties are common in medical domain. Existing literature uses stateof- the-art DensetNet/Resnet models being transfer learned where output neurons of the networks are trained for individual diseases to cater for multiple diseases labels in each image. However, most of them don't consider relationship between multiple classes. In this work we have proposed a novel error function, Multi-label Softmax Loss (MSML), to specifically address the properties of multiple labels and imbalanced data. Moreover, we have designed deep network architecture based on fine-grained classification concept that incorporates MSML. We have evaluated our proposed method on various network backbones and showed consistent performance improvements of AUC-ROC scores on the ChestX-ray14 dataset. The proposed error function provides a new method to gain improved performance across wider medical datasets.

cs.CV↗

arXiv2018

Adversarial Discriminative Sim-to-real Transfer of Visuo-motor Policies

Various approaches have been proposed to learn visuo-motor policies for real-world robotic applications. One solution is first learning in simulation then transferring to the real world. In the transfer, most existing approaches need real-world images with labels. However, the labelling process is often expensive or even impractical in many robotic applications. In this paper, we propose an adversarial discriminative sim-to-real transfer approach to reduce the cost of labelling real data. The effectiveness of the approach is demonstrated with modular networks in a table-top object reaching task where a 7 DoF arm is controlled in velocity mode to reach a blue cuboid in clutter through visual observations. The adversarial transfer approach reduced the labelled real data requirement by 50%. Policies can be transferred to real environments with only 93 labelled and 186 unlabelled real images. The transferred visuo-motor policies are robust to novel (not seen in training) objects in clutter and even a moving target, achieving a 97.8% success rate and 1.8 cm control accuracy.

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arXiv2017

Simple Online and Realtime Tracking

This paper explores a pragmatic approach to multiple object tracking where the main focus is to associate objects efficiently for online and realtime applications. To this end, detection quality is identified as a key factor influencing tracking performance, where changing the detector can improve tracking by up to 18.9%. Despite only using a rudimentary combination of familiar techniques such as the Kalman Filter and Hungarian algorithm for the tracking components, this approach achieves an accuracy comparable to state-of-the-art online trackers. Furthermore, due to the simplicity of our tracking method, the tracker updates at a rate of 260 Hz which is over 20x faster than other state-of-the-art trackers.

cs.CV↗

arXiv2015

Subset Feature Learning for Fine-Grained Category Classification

Fine-grained categorisation has been a challenging problem due to small inter-class variation, large intra-class variation and low number of training images. We propose a learning system which first clusters visually similar classes and then learns deep convolutional neural network features specific to each subset. Experiments on the popular fine-grained Caltech-UCSD bird dataset show that the proposed method outperforms recent fine-grained categorisation methods under the most difficult setting: no bounding boxes are presented at test time. It achieves a mean accuracy of 77.5%, compared to the previous best performance of 73.2%. We also show that progressive transfer learning allows us to first learn domain-generic features (for bird classification) which can then be adapted to specific set of bird classes, yielding improvements in accuracy.

cs.CV↗