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physics.comp-ph

physics.comp-ph: explore 63 source-linked works published from 2025 to 2026, with original documents and citations.

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Includes records with this source-supplied label or an explicit phrase match in their metadata. Matches indicate a mention, not proof that a paper uses a method or tests a material. Source versions are consolidated by DOI.

Sources: arxiv. Collection updated 2026-09-16. Counts describe this index, not the complete source archives.

Propensity Straight-Through Gradients for Discrete Stochastic Systems

Continuous-time Markov chains (CTMCs) provide the backbone for modeling discrete stochastic dynamics across applied, physical, and biological sciences. Their integration with modern gradient-based machine learning, however, is limited by the hard categorical event selection intrinsic to Gillespie-type simulation algorithms. We exploit the affine state update to obtain the exact one-step conditional-mean sensitivity by differentiating normalized reaction propensities. We pair this backward rule with exact forward trajectories to define the propensity straight-through (PST) estimator. At the trajectory level, we show that one-step sensitivities composed across events can depart from the exact multistep sensitivity. We derive the resulting per-step discrepancy in closed form and prove that it vanishes identically for affine downstream dependence. PST matches the accuracy of Gumbel-Softmax straight-through across all benchmarks: reversible dimerization (0.06% error), a genetic oscillator (1.7% error), a 50-task repressilator suite (0.17% median error), and patch-clamp ion-channel recordings ($R^2$ = 0.988). Under matched settings, PST converges 3.0-fold faster on the oscillator and 2.1-fold faster on the ion channel. At deep-learning scale, PST trains a 203,796-parameter stochastic reaction network with hard sampling, reaching 98.22% MNIST digit classification accuracy. By differentiating an exact conditional mean rather than a relaxed sample, PST offers a temperature- and Gumbel-free path to scalable gradient-based learning through exact stochastic trajectories.

q-bio.QM↗

A Framework Integrating the Dynamic Stiffness Matrix with Physics-Informed Neural Networks for Solving Eigenvalue Problems and Analysing Dynamic Response

This paper introduces a framework that integrates the dynamic stiffness matrix (DSM) with physics-informed neural networks (PINN). The DSM-PINN embeds physical constraints within the model and demonstrates robustness, particularly when addressing limited datasets across diverse investigations. In this approach, deep neural network outputs approximate the displacement fields of element nodes. Unlike the finite element method (FEM), the element shape functions are homogeneous solutions to the governing partial differential equation, forming the basis of the exact dynamic stiffness matrix, thereby avoiding high-order derivative terms. This matrix also serves as a frequency-domain spectral element, resulting in a strong-form PINN. The loss function is produced by connecting neural networks with dynamic stiffness matrices. We focus on utilising PINNs to resolve eigenvalue problems by employing the Wittrick-Williams algorithm, which overcomes the challenge of neural networks failing to converge to higher-order eigenvalues. Additionally, the frequency domain-PINN method is used to analyse structural dynamic responses under moving and impulsive loads, addressing the limitation of neural networks in handling complex numbers. Theoretical convergence stability of the suggested approach is also analysed even DSM is an indefinite matrix after implementing the boundary condition. The numerical results validate the practicality and efficacy of the recommended approach.

math.NA↗

Functional Connectivity Networks for Transportation Delay Analysis: from Theory to Software

Within the endeavour of modelling and understanding the propagation of delays in transportation networks, an approach that has attracted increasing interest in the last decade is the creation of functional network representations. These graphs map elements of interest (e.g. airports or stations) as nodes, and derive pairwise propagation patterns from their dynamics through correlation and causality tests. In spite of multiple notable results, this approach still lacks a coherent framework, with decisions related to many fundamental steps being left to the judgement of the researcher. We here provide an introduction to the theory behind functional networks for transportation systems, detailing the main steps and the associated pitfalls. We further introduce a Python package, delaynet, designed to support the researcher in the reconstruction and analysis of such networks. We finally present an analysis of the propagation of delays in the Swiss train system; and discuss future research steps.

physics.soc-ph↗

NORi: An ML-Augmented Ocean Boundary Layer Parameterization

NORi is a machine learning (ML) parameterization of ocean boundary layer turbulence that is physics-based and augmented with neural networks. NORi stands for neural ordinary differential equations (NODEs) Richardson number (Ri) closure. The physical parameterization is controlled by a Richardson number-dependent diffusivity and viscosity. The neural ODEs are trained to capture the entrainment through the base of the boundary layer, which cannot be represented with a local diffusive closure. The parameterization is trained using large-eddy simulations in an a posteriori fashion, where parameters are calibrated with a loss function that explicitly depends on the actual time-integrated variables of interest rather than the instantaneous subgrid fluxes, which are inherently noisy. NORi conserves tracers by design, uses realistic nonlinear thermodynamics, and demonstrates excellent prediction and generalization capabilities in capturing entrainment dynamics under different convective strengths, background stratifications, rotation, and wind forcings. NORi is shown to simulate the seasonal evolution of the boundary layer at Ocean Weather Station Papa with similar performance to the state-of-the-art two-equation k-epsilon closure. When implemented in a double-gyre simulation, it is numerically stable for at least 100 years, despite only being trained on two-day horizons, and can be run with time steps as long as one hour. Combining highly expressive neural networks with a physically grounded base closure proves to be a robust paradigm for designing parameterizations for climate models: data required and training cost are drastically reduced, inference performance can be directly optimized as a primary objective, and numerical stability is implicitly promoted through training.

physics.ao-ph↗

Physics-informed neural networks by Gradient-Guided Gaussian Adaptive Sampling (3GAS-PINNs)

Physics-informed neural networks (PINNs) provide a mesh-free framework for solving partial differential equations, yet their performance in nonlinear problems is often limited by slow convergence, gradient imbalance, and insufficient resolution to capture localized intermittent structures such as shock waves[1]. These issues arise primarily from the use of fixed weights of loss and uniform collocation point distributions, which cannot adapt to the evolving complexity of the solution field during training. To address these challenges, Gradient-Guided Gaussian Adaptive Sampling Physics-Informed Neural Networks (3GAS-PINNs) is proposed in this paper, which combines uniform probability distribution and Gaussian-smoothed probability distribution derived from the spatial gradients of solution, to maintain global constraint satisfaction as well as concentrating collocation points in regions of high gradient. Thus, intermittency structures like shock wave and solitons can be accurately captured. The method is evaluated on three benchmark nonlinear problems, including one-dimensional forced Burgers equation, Korteweg-de Vries (KdV) equation and nonlinear Schrodinger equation, all of which exhibit steep gradients or strong nonlinearity. In comparison with baseline PINNs, 3GAS-PINNs can effectively promote the physical consistency in intermittent regions. The accuracy of the numerical simulation can be improved by a factor of up to 14.

cs.LG↗

LBFAST: A Lightweight Moment-Represented Lattice Boltzmann Solver for Multi-GPU Architectures

We present LBFAST, a GPU-oriented lattice Boltzmann solver based on a lightweight moment-represented formulation, in which post-collision populations are reconstructed on the fly from a reduced set of moments rather than stored explicitly. This approach significantly lowers the memory footprint, enabling large three-dimensional simulations within the constraints of modern accelerator architectures, where VRAM capacity and bandwidth are critical resources. The method is assessed through standard single- and two-component benchmarks demonstrating good accuracy and stability. Extensive scaling experiments on multi-GPU systems show near-ideal weak scaling up to 512 GPUs and sustained performance across different velocity sets. The combination of reduced memory usage, competitive throughput, and stable energy efficiency makes the proposed formulation a practical route for large-scale lattice Boltzmann simulations on current and emerging HPC platforms.

cs.DC↗

Geometric integrators for adiabatically closed simple thermodynamic systems

A variational formulation for non-equilibrium thermodynamics was developed by Gay-Balmaz and Yoshimura. In a recent article, the first two authors of the present paper introduced partially cosymplectic structures as a geometric framework for thermodynamic systems, recovering the evolution equations obtained variationally. In this paper, we develop a discrete variational principle for adiabatically closed simple thermodynamic systems, which can be utilised to construct numerical integrators for the dynamics of such systems. The effectiveness of our method is illustrated with several examples.

math-ph↗

Higher order stray field computation on tensor product domains

We present an extension of the tensor grid method for stray field computation on rectangular domains that incorporates higher-order basis functions. Both the magnetization and the resulting magnetic field are represented using higher-order B-spline bases, which allow for increased accuracy and smoothness. The method employs a super-potential formulation, which circumvents the need to convolve with a singular kernel. The field is represented with high accuracy as a functional Tucker tensor, leveraging separable expansions on the tensor product domain and trained via a multilinear extension of the extreme learning machine methodology. Unlike conventional grid-based methods, the proposed mesh-free approach allows for continuous field evaluation. Numerical experiments confirm the accuracy and efficiency of the proposed method, demonstrating exponential convergence of the energy and linear computational scaling with respect to the multilinear expansion rank.

physics.comp-ph↗

Reinforcement learning framework for the mechanical design of microelectronic components under multiphysics constraints

This study focuses on the development of reinforcement learning based techniques for the design of microelectronic components under multiphysics constraints. While traditional design approaches based on global optimization approaches are effective when dealing with a small number of design parameters, as the complexity of the solution space and of the constraints increases different techniques are needed. This is an important reason that makes the design and optimization of microelectronic components (characterized by large solution space and multiphysics constraints) very challenging for traditional methods. By taking as prototypical elements an application-specific integrated circuit (ASIC) and a heterogeneously integrated (HI) interposer, we develop and numerically test an optimization framework based on reinforcement learning (RL). More specifically, we consider the optimization of the bonded interconnect geometry for an ASIC chip as well as the placement of components on a HI interposer while satisfying thermoelastic and design constraints. This placement problem is particularly interesting because it features a high-dimensional solution space.

physics.comp-ph↗
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