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arXiv2010

A Diffusive Strategic Dynamics for Social Systems

We propose a model for the dynamics of a social system, which includes diffusive effects and a biased rule for spin-flips, reproducing the effect of strategic choices. This model is able to mimic some phenomena taking place during marketing or political campaigns. Using a cost function based on the Ising model defined on the typical quenched interaction environments for social systems (Erdos-Renyi graph, small-world and scale-free networks), we find, by numerical simulations, that a stable stationary state is reached, and we compare the final state to the one obtained with standard dynamics, by means of total magnetization and magnetic susceptibility. Our results show that the diffusive strategic dynamics features a critical interaction parameter strictly lower than the standard one. We discuss the relevance of our findings in social systems.

physics.soc-ph↗

arXiv2009

A simple model for Carnot heat engines

We present a (random) mechanical model consisting of two lottery-like reservoirs at altitude $E_h$ and $E_l<E_h$, respectively, in the earth's gravitational field. Both reservoirs consist of $N$ possible ball locations. The upper reservoir contains initially $n_h\le N$ weight-1 balls and the lower reservoir contains initially $n_l\le N$ weight-1 balls. Empty locations are treated as weight-0 balls. These reservoirs are being shaken up so that all possible ball configurations are equally likely to occur. A cycle consists of exchanging a ball randomly picked from the higher reservoir and a ball randomly picked from the lower reservoir. It is straightforward to show that the efficiency, defined as the ratio of the average work produced to the average energy lost by the higher reservoir is $η=1-E_l/E_h$. We then relate this system to a heat engine. This thermal interpretation is applicable only when the number of balls is large. We define the entropy as the logarithm of the number of ball configurations in a reservoir, namely $S(n)=\ln[N!/n!(N-n)!]$, with subscripts $h,l$ appended to $S$ and to $n$. When $n_l$ does not differ much from $n_h$, the system efficiency quoted above is found to coincide with the maximum efficiency $η=1-T_l/T_h$, where the $T$ are absolute temperatures defined from the above expression of $S$. Fluctuations are evaluated in Appendix A, and the history of the Carnot discovery (1824) is recalled in Appendix B. Only elementary physical and mathematical concepts are employed.

cond-mat.stat-mech↗

arXiv2009

Anomalous non-linear response of glassy liquids: general arguments and a Mode-Coupling approach

We study theoretically the non-linear response properties of glass formers. We establish several general results which, together with the assumption of Time-Temperature Superposition, lead to a relation between the non-linear response and the derivative of the linear response with respect to temperature. Using results from Mode-Coupling Theory (MCT) and scaling arguments valid close to the glass transition, we obtain the frequency and temperature dependence of the non-linear response in the $α$ and $β$-regimes. Our results demonstrate that supercooled liquids are characterized by responses to external perturbations that become increasingly non-linear as the glass transition is approached. These results are extended to the case of inhomogeneous perturbing fields.

cond-mat.stat-mech↗

arXiv2008

Adiabatic dynamics of a quantum critical system coupled to an environment: Scaling and kinetic equation approaches

We study the dynamics of open quantum many-body systems driven across a critical point by quenching an Hamiltonian parameter at a certain velocity. General scaling laws are derived for the density of excitations and energy produced during the quench as a function of quench velocity and bath temperature. The scaling laws and their regimes of validity are verified for the XY spin chain locally coupled to bosonic baths. A detailed derivation and analysis of the kinetic equation of the problem is presented.

cond-mat.stat-mech↗

arXiv2008

Multi-level algorithms for modularity clustering

Modularity is one of the most widely used quality measures for graph clusterings. Maximizing modularity is NP-hard, and the runtime of exact algorithms is prohibitive for large graphs. A simple and effective class of heuristics coarsens the graph by iteratively merging clusters (starting from singletons), and optionally refines the resulting clustering by iteratively moving individual vertices between clusters. Several heuristics of this type have been proposed in the literature, but little is known about their relative performance. This paper experimentally compares existing and new coarsening- and refinement-based heuristics with respect to their effectiveness (achieved modularity) and efficiency (runtime). Concerning coarsening, it turns out that the most widely used criterion for merging clusters (modularity increase) is outperformed by other simple criteria, and that a recent algorithm by Schuetz and Caflisch is no improvement over simple greedy coarsening for these criteria. Concerning refinement, a new multi-level algorithm is shown to produce significantly better clusterings than conventional single-level algorithms. A comparison with published benchmark results and algorithm implementations shows that combinations of coarsening and multi-level refinement are competitive with the best algorithms in the literature.

cs.DS↗

arXiv2009

Gap Estimation by means of Hyperbolic Deformation

We present a way of numerical gap estimation applicable for one-dimensional infinite uniform quantum systems. Using the density matrix renormalization group method for a non-uniform Hamiltonian, which has deformed interaction strength of $j$-th bond proportional to $\cosh λj$, the uniform Hamiltonian is analyzed as a limit of $λ\to 0$. As a consequence of the deformation, an excited quasi-particle is weakly bounded around the center of the system, and kept away from the system boundary. Therefore, insensitivity of an estimated excitation gap of the deformed system to the boundary allows us to have the bulk excitation gap $Δ(λ)$, and shift in $Δ(λ)$ from $Δ(0)$ is nearly linear in $λ$ when $λ\ll 1$. Efficiency of this estimation is demonstrated through application to the S=1 antiferromagnetic Heisenberg chain. Combining the above estimation and another one obtained from the technique of convergence acceleration for finite-size gaps estimated by numerical diagonalizations, we conclude that the Haldane gap is in $[0.41047905,~0.41047931]$.

cond-mat.stat-mech↗

arXiv2009

RNA polymerase motor on DNA track: effects of interactions, external force and torque

RNA polymerase (RNAP) is a mobile molecular workshop that polymerizes a RNA molecule by adding monomeric subunits one by one, while moving step by step on the DNA template itself. Here we develop a theoretical model by incorporating the steric interactions of the RNAPs and their mechanochemical cycles which explicitly captures the cyclical shape changes of each motor. Using this model, we explain not only the dependence of the average velocity of a RNAP on the externally applied load force, but also predict a {\it nonmotonic} variation of the average velocity on external torque. We also show the effect of steric interactions of the motors on the total rate of RNA synthesis. In principle, our predictions can be tested by carrying out {\it in-vitro} experiments which we suggest here.

physics.bio-ph↗

arXiv2008

Novel Mechanisms for repulsive Casimir forces

We present two novel models for repulsive Casimir interaction between positive perturbations. One example relies on non locality of the dielectric response and one relies on interference between (attractive) modes. Such examples are impossible to achieve in 1d massless theories, as they are prohibited by a generalization of the result of Lambrecht, Jaekel and Reynaud [Phys.Lett. A 225 (1997)] to non local dielectrics and to negative perturbations

quant-ph↗

arXiv2009

Phase Transitions in Transportation Networks with Nonlinearities

We investigate a model of transportation networks with nonlinear elements which may represent local shortage of resources. Frustrations arise from competition for resources. When the initial resources are uniform, different regimes with discrete fractions of satisfied nodes are observed, resembling the Devil's staircase. We demonstrate how functional recursions are converted to simple recursions of probabilities. Behavior similar to those in the vertex cover or close packing problems are found. When the initial resources are bimodally distributed, increases in the fraction of rich nodes induce a glassy transition, entering an algorithmically hard regime.

cond-mat.dis-nn↗

arXiv2009

Bidirectional cooperative motion of myosin-II motors on actin tracks with randomly alternating polarities

The cooperative action of many molecular motors is essential for dynamic processes such as cell motility and mitosis. This action can be studied by using motility assays in which the motion of cytoskeletal filaments over a surface coated with motor proteins is tracked. In previous studies of actin-myosin II systems, fast directional motion was observed, reflecting the tendency of myosin II motors to propagate unidirectionally along actin filaments. Here, we present a motility assay with actin bundles consisting of short filamentous segments with randomly alternating polarities. These actin tracks exhibit bidirectional motion with macroscopically large time intervals (of the order of several seconds) between direction reversals. Analysis of this bidirectional motion reveals that the characteristic reversal time, $τ_{rev}$, does not depend on the size of the moving bundle or on the number of motors, $N$. This observation contradicts previous theoretical calculations based on a two-state ratchet model [Badoual et al., Proc. Natl. Acad. Sci. USA, vol. 99, p. 6696 (2002)], predicting an exponential increase of $τ_{rev}$ with $N$. We present a modified version of this model that takes into account the elastic energy due to the stretching of the actin track by the myosin II motors. The new model yields a very good quantitative agreement with the experimental results.

cond-mat.soft↗

arXiv2009

Central limit theorems for correlated variables: some critical remarks

In this talk I first review at an elementary level a selection of central limit theorems, including some lesser known cases, for sums and maxima of uncorrelated and correlated random variables. I recall why several of them appear in physics. Next, I show that there is room for new versions of central limit theorems applicable to specific classes of problems. Finally, I argue that we have insufficient evidence that, as a consequence of such a theorem, q-Gaussians occupy a special place in statistical physics.

cond-mat.stat-mech↗

arXiv2009

Dynamics of a three-dimensional inextensible chain

In the first part of this work the classical and statistical aspects of the dynamics of an inextensible chain in three dimensions are investigated. In the second part the special case of a chain admitting only fixed angles with respect to the $z-$axis is studied using a path integral approach. It is shown that it is possible to reduce this problem to a two-dimensional case, in a way which is similar to the reduction of the statistical mechanics of a directed polymer to the random walk of a two-dimensional particle.

cond-mat.stat-mech↗

arXiv2009

The peculiarities of Bose-condensation of quasiparticles

An attempt is made to consider the difference between the proccesses of the Bose-Einstein condensation of particles and quasiparticles. An equation for particle number of the Bose-condensate as a function of the total number of particles in the system is obtained. This equation is also written for the caseof quasiparticles with taking into account their creation by pumping and the existence ofequilibriumthermal excitations in the system. From the analysis of both these equations the chemical potential of pumped quasiparticles and their number in the condensate as a function of pumping intensity is found. It is shown that for low energy quasiparticles the proccess of Bose-condensation begins and proceeds at arbitrary temperatures high enough included.

cond-mat.stat-mech↗

arXiv2009

Modular Gene Dynamics and Network Theory at Mesoscopic Scale

Complex dynamical systems are often modeled as networks, with nodes representing dynamical units which interact through the network's links. Gene regulatory networks, responsible for the production of proteins inside a cell, are an example of system that can be described as a network of interacting genes. The behavior of a complex dynamical system is characterized by cooperativity of its units at various scales, leading to emergent dynamics which is related to the system's function. Among the key problems concerning complex systems is the issue of stability of their functioning, in relation to different internal and external interaction parameters. In this Thesis we study two-dimensional chaotic maps coupled through non-directed networks with different topologies. We use a non-symplectic coupling which involves a time delay in the interaction among the maps. We test the stability of network topologies through investigation of their collective motion, done by analyzing the departures from chaotic nature of the isolated units. The study is done on two network scales: (a) full-size networks (a computer generated scalefree tree and a tree with addition of cliques); (b) tree's characteristic sub-graph 4-star, as a tree's typical dynamical motif which captures its topology in smallest possible number of nodes and is suitable for time-delayed interaction. We study the dynamical relationship between these two network structures, examining the emergence of cooperativity on a large scale (trees) as a consequence of mesoscale dynamical patterns exhibited by the 4-star. (FULL ABSTRACT INSIDE THE TEXT)

cond-mat.stat-mech↗

arXiv2009

Gibbs Free Energy Analysis of a Quantum Analog of the Classical Binary Symmetric Channel

The Gibbs free energy properties of a quantum {\it send, receive} communications system are studied. The communications model resembles the classical Ising model of spins on a lattice in that the joint state of the quantum system is the product of sender and receiver states. However, the system differs from the classical case in that the sender and receiver spin states are quantum superposition states coupled by a Hamiltonian operator. A basic understanding of these states is directly relevant to communications theory and indirectly relevant to computation since the product states form a basis for entangled states. Highlights of the study include an exact method for decimation for quantum spins. The main result is that the minimum Gibbs free energy of the quantum system in the product state is higher (lower capacity) than a classical system with the same parameter values. The result is both surprising and not. The channel characteristics of the quantum system in the product state are markedly inferior to those of the classical Ising system. Intuitively, it would seem that capacity should suffer as a result. Yet, one would expect entangled states, built from product states, to have better correlation properties.

physics.gen-ph↗

arXiv2015

Nonlinear Closure Relations Theory for Transport Processes in Non-Equilibrium Systems

A decade ago, a macroscopic theory for closure relations has been proposed for systems out of Onsager's region. This theory is referred to as the "Thermodynamic Field Theory" (TFT). The aim of the work was to determine the nonlinear flux-force relations that respect the thermodynamic theorems for systems far from equilibrium. We propose a new formulation of the TFT where one of the basic restrictions, namely the closed-form solution for the skew-symmetric piece of the transport coefficients, has been removed. In addition, the general covariance principle is replaced by the De Donder-Prigogine thermodynamic covariance principle (TCP). The introduction of TCP requires the application of an appropriate mathematical formalism, which is referred to as the "entropy-covariant formalism". By geometrical arguments, we prove the validity of the Glansdorff-Prigogine Universal Criterion of Evolution. A new set of closure equations determining the nonlinear corrections to the linear ("Onsager") transport coefficients is also derived. The geometry of the thermodynamic space is non-Riemannian. However, it tends to be Riemannian for high values of the entropy production. In this limit, we recover the transport equations found by the old theory. Applications of our approach to transport in magnetically confined plasmas, materials submitted to temperature and electric potential gradients or to unimolecular triangular chemical reactions can be found at references cited herein. Transport processes in tokamak plasmas are of particular interest. In this case, even in absence of turbulence, the state of the plasma remains close to (but, it is not in) a state of local equilibrium. This prevents the transport relations from being linear.

cond-mat.stat-mech↗

arXiv2010

Dynamics of quantum phase transitions in Dicke and Lipkin-Meshkov-Glick models

We consider dynamics of Dicke models, with and without counterrotating terms, under slow variations of parameters which drive the system through a quantum phase transition. The model without counterrotating terms and sweeped detuning is seen in the contexts of a many-body generalization of the Landau-Zener model and the dynamical passage through a second-order quantum phase transition (QPT). Adiabaticity is destroyed when the parameter crosses a critical value. Applying semiclassical analysis based on concepts of classical adiabatic invariants and mapping to the second Painleve equation (PII), we derive a formula which accurately describes particle distributions in the Hilbert space at wide range of parameters and initial conditions of the system. We find striking universal features in the particle distributions which can be probed in an experiment on Feshbach resonance passage or a cavity QED experiment. The dynamics is found to be crucially dependent on the direction of the sweep. The model with counterrotating terms has been realized recently in an experiment with ultracold atomic gases in a cavity. Its semiclassical dynamics is described by a Hamiltonian system with two degrees of freedom. Passage through a QPT corresponds to passage through a bifurcation, and can also be described by PII (after averaging over fast variables), leading to similar universal distributions. Under certain conditions, the Dicke model is reduced to the Lipkin-Meshkov-Glick model.

cond-mat.stat-mech↗

arXiv2009

Comment on `Detailed balance has a counterpart in non-equilibrium steady states'

Transition rates in continuously driven steady states were derived in [Evans R M L, 2005 J. Phys. A: Math. Gen. 38, 293] by demanding that no information other than the microscopic laws of motion and the macroscopic observables of the system be used to describe it. In addition to the mean energy at equilibrium, and unlike them, these driven states have a finite throughput of flux. This implies that the (nonequilibrium) reservoir, to which the system is weakly coupled, is fully characterised by its mean energy and mean flux. While we expect the resulting prescription for the rates in continuous and discretised time versions of models of real systems to be equivalent, it is not trivial to see this from the expression for the rates derived previously. We demonstrate this equivalence for a model of activated processes solved previously for continuous time, thus demonstrating consistency of theory.

cond-mat.stat-mech↗