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Data Analysis Techniques for Resolving Nonlinear Processes in Plasmas : a Review

The growing need for a better understanding of nonlinear processes in plasma physics has in the last decades stimulated the development of new and more advanced data analysis techniques. This review lists some of the basic properties one may wish to infer from a data set and then presents appropriate analysis techniques with some recent applications. The emphasis is put on the investigation of nonlinear wave phenomena and turbulence in space plasmas.

comp-gas↗

A New Fast Method for Determining Local Properties of Striped Patterns

From the striped coats of zebras to the ripples in windblown sand, the natural world abounds with locally banded patterns. Such patterns have been of great interest throughout history, and, in the last twenty years, scientists in a wide variety of fields have been studying the patterns formed in well-controlled experiments that yield enormous quantities of high-precision data. These experiments involving phenomena as diverse as chemical reactions in shallow layers, thermal convection in horizontal fluid layers, periodically shaken layers of sand, and the growth of slime mold colonies often display patterns that appear qualitatively similar. Methods are needed to characterize in a reasonable amount of time the differences and similarities in patterns that develop in different systems, as well as in patterns formed in one system for different experimental conditions. In this Letter, we introduce a novel, fast method for determining local pattern properties such as wavenumber, orientation, and curvature as a function of position for locally striped patterns.

comp-gas↗

Lattice Gas Prediction is P-complete

We show that predicting the HPP or FHP III lattice gas for finite time is equivalent to calculating the output of an arbitrary Boolean circuit, and is therefore P-complete: that is, it is just as hard as any other problem solvable by a serial computer in polynomial time. It is widely believed in computer science that there are inherently sequential problems, for which parallel processing gives no significant speedup. Unless this is false, it is impossible even with highly parallel processing to predict lattice gases much faster than by explicit simulation. More precisely, we cannot predict t time-steps of a lattice gas in parallel computation time O(log^k t) for any k, or O(t^α) for α< 1/2, unless the class P is equal to the class NC or SP respectively.

comp-gas↗

Dynamic Predictions from Time Series Data- An Artificial Neural Network Approach

A hybrid approach, incorporating concepts of nonlinear dynamics in artificial neural networks (ANN), is proposed to model time series generated by complex dynamic systems. We introduce well known features used in the study of dynamic systems - time delay $τ$ and embedding dimension $d$ - for ANN modelling of time series. These features provide a theoretical basis for selecting the optimal size for the number of neurons in the input layer. The main outcome for the number of neurons in the input layer. The main outcome of the new approach for such problems is that to a large extent it defines the ANN architecture and leads to better predictions. We illustrate our method by considering computer generated periodic and chaotic time series. The ANN model developed gave excellent quality of fit for the training and test sets as well as for iterative dynamic predictions for future values of the two time series. Further, computer experiments were conducted by introducing Gaussian noise of various degrees in the two time series, to simulate real world effects. We find rather surprising results that upto a limit introduction of noise leads to a smaller network with good generalizing capability.

comp-gas↗

Computations on Nondeterministic Cellular Automata

The work is concerned with the trade-offs between the dimension and the time and space complexity of computations on nondeterministic cellular automata. It is proved, that 1). Every NCA $\Cal A$ of dimension $r$, computing a predicate $P$ with time complexity T(n) and space complexity S(n) can be simulated by $r$-dimensional NCA with time and space complexity $O(T^{\frac{1}{r+1}} S^{\frac{r}{r+1}})$ and by $r+1$-dimensional NCA with time and space complexity $O(T^{1/2} +S)$. 2) For any predicate $P$ and integer $r>1$ if $\Cal A$ is a fastest $r$-dimensional NCA computing $P$ with time complexity T(n) and space complexity S(n), then $T= O(S)$. 3). If $T_{r,P}$ is time complexity of a fastest $r$-dimensional NCA computing predicate $P$ then $T_{r+1,P} &=O((T_{r,P})^{1-r/(r+1)^2})$, $T_{r-1,P} &=O((T_{r,P})^{1+2/r})$. Similar problems for deterministic CA are discussed.

comp-gas↗

Lindenmayer systems as a model of computations

LS is a particular type of computational processes simulating living tissue. They use an unlimited branching process arising from the simultaneous substitutions of some words instead of letters in some initial word. This combines the properties of cellular automata and grammars. It is proved that 1) The set of languages, computed in a polynomial time on such LS that all replacing words are not empty, is exactly NP- languages. 2) The set of languages, computed in a polynomial time on arbitrary LS, contains the polynomial hierarchy. 3) The set of languages, computed in a polynomial time on a nondeterministic version of LS, strictly contains the set of languages, computed in a polynomial time on Turing Machines with a space complexity $n^a$, where $a$ is positive integer. In particular, the last two results mean that Lindenmayer systems may be even more powerful tool of computations than nondeterministic Turing Machine.

comp-gas↗

Effect of Boundary Conditions on Cellular Automata that Classify Density

The properties of two-state nearest-neighbour cellular automata (CA) that are capable of density classification are discussed. It is shown that these CA actually conserve the total density, rather than merely classifying it. This is also the criterion for any CA simulation of DFT. The effect of boundary and periodicity conditions upon the evolution of such CA are elaborated by considering linear and cyclic lattices and boundary conditions consistent with the conservation criterion. In a bounded linear lattice, it is possible to achieve a configuration with a single 01 and no 10 domain wall, or vice versa, but this is not possible in a cyclic lattice, where these two domain walls have to appear in pairs. This determines the final stable state of the automaton.

comp-gas↗

Generalized Thermal Lattice Gases

We show how to employ thermal lattice gas models to describe non-equilibrium phenomena. This is achieved by relaxing the restrictions of the usual micro-canonical ensemble for these models via the introduction of thermal ``demons'' in the style of Creutz. Within the Lattice Boltzmann approximation, we then derive general expressions for the usual transport coefficients of such models, in terms of the derivatives of their equilibrium distribution functions. To illustrate potential applications, we choose a model obeying Maxwell-Boltzmann statistics, and simulate Rayleigh-Bénard convection with a forcing term and a temperature gradient, both of which are continuously variable.

comp-gas↗

Lattice-Boltzmann Simulations of Fluid Flows in MEMS

The lattice Boltzmann model is a simplified kinetic method based on the particle distribution function. We use this method to simulate problems in MEMS, in which the velocity slip near the wall plays an important role. It is demonstrated that the lattice Boltzmann method can capture the fundamental behavior in micro-channel flow, including velocity slip and nonlinear pressure drop along the channel. The Knudsen number dependence of the position of the vortex center and the pressure contour in micro-cavity flows is also demonstrated.

comp-gas↗

Cellular Automaton Model for Immunology of Tumor Growth

The stochastic discrete space-time model of an immune response on tumor spreading in a two-dimensional square lattice has been developed. The immunity-tumor interactions are described at the cellular level and then transferred into the setting of cellular automata (CA). The multistate CA model for system, in which all statesoflattice sites, composing of both immune and tumor cells populations, are the functions of the states of the 12 nearest neighbors. The CA model incorporates the essential featuresof the immunity-tumor system. Three regimes of neoplastic evolution including metastatic tumor growth and screen effect by inactive immune cells surrounding a tumor have been predicted.

comp-gas↗

Crystalline Computation

A cellular automaton is a deterministic and exactly computable dynamical system which mimics certain fundamental aspects of physical dynamics such as spatial locality and finite entropy. CA systems can be constructed which have additional attributes that are basic to physics: systems which are exactly invertible at their finest scale, which obey exact conservation laws, which support the evolution of arbitrary complexity, etc. In this paper, we discuss techniques for bringing CA models closer to physics, and some of the interesting consequences of doing so.

comp-gas↗

Lattice Gases and Cellular Automata

We review the class of cellular automata known as lattice gases, and their applications to problems in physics and materials science. The presentation is self-contained, and assumes very little prior knowledge of the subject. Hydrodynamic lattice gases are emphasized, and non-lattice-gas cellular automata -- even those with physical applications -- are not treated at all. We begin with a review of lattice gases as the term is understood in equilibrium statistical physics. We then discuss the various methods that have been proposed to simulate hydrodynamics with a lattice gas, leading up to the 1986 discovery of a lattice gas for the isotropic Navier-Stokes equations. Finally, we discuss variants of lattice-gas models that have been used for the simulation of complex fluids.

comp-gas↗

Construction of Molecular Dynamics Like Cellular Automata Models for Simulation of Compressible Fluid Dynamic Systems

This study aims at finding a method for constructing molecular dynamics like models using the formalism of cellular automata for fast simulation of fluid dynamic systems (including compressible phenomena). In as much as the results indicate, the attempt is successful. A systematic method for constructing cellular automata models of fluid dynamic systems is discovered and proposed following a review of the existing developments. The considerations required for constructing such models for fluid dynamic systems consisting of particles with arbitrary interaction potentials and existing over arbitrary spatial lattices are outlined. The method is illustrated by constructing a model for simulation of systems of particles moving with unit speed along the links of an underlying square spatial lattice. Using this model, two two-dimensional systems are simulated and studied for a number of model and system parameters. For almost all the model and system parameters, the results are found to be in complete agreement with the available theoretical predictions. For some model parameters, results show (expected) departure from theoretical predictions which is explained.

comp-gas↗

Driven Morse Oscillator: Model for Multi-photon Dissociation of Nitrogen Oxide

Within a one-dimensional semi-classical model with a Morse potential the possibility of microwave multi-photon dissociation of vibrationally excited nitrogen oxide was studied. The dissociation thresholds of typical driving forces and couplings were found to be similar, which indicates that the results were robust to variations of the potential and the definition of dissociation rate.

cond-mat↗

New tests of random numbers for simulations in physical systems

The aim of this Thesis is to present five new tests for random numbers, which are widely used {\em e.g.} in computer simulations in physics applications. The first two tests, the cluster test and the autocorrelation test, are based on analogies to the two-dimensional Ising model. The next two, the random walk test and the $n$-block test, are based on studies of random walks, and the condition number test presented last uses some results of Gaussian distributed random matrices. Studies with several commonly used pseudorandom number generators reveal that the cluster test is particularly powerful in finding periodic correlations on bit level, and that the autocorrelation test, the random walk test, and the $n$-block test are very effective in detecting short-ranged correlations. The results of the condition number test are mostly inconclusive, however. By means of the tests presented in this work, two important results are found. First, we show quantitatively that the reason for erroneous results in some recent high precision Monte Carlo simulations for some commonly used pseudorandom number generators are the so called triple correlations in the sequences. Then, we show that the properties of such a sequence may be considerably improved, if only a certain portion of it is used.

cond-mat↗

Macros and Multiscale Dynamics in Spin Glasses

We study the spacial and temporal multiscale properties of complex systems. We present accelerated algorithms for dilute spin glasses and display explicitly their relation to the effective dynamics of specific collective degrees of freedom (macros). We discuss the difficulties in applying multiscale-cluster algorithms(MCA) to general frustrated systems: MCA does not succeed to break the system into clusters. We relate these difficulties to rigorous negative results in systems with an ultrametric space of ground states: the tunneling between vacua cannot be expressed into an algorithm acting upon independent macros.

cond-mat↗

Phase Transitions in a Probabilistic Cellular Automaton with Two Absorbing States

We study the phase diagram and the critical behavior of a one-dimensional radius-1 two-state totalistic probabilistic cellular automaton having two absorbing states. This system exhibits a first-order phase transition between the fully occupied state and the empty state, two second-order phase transitions between a partially occupied state and either the fully occupied state or the empty state, and a second-order damage-spreading phase transition. It is found that all the second-order phase transitions have the same critical behavior as the directed percolation model. The mean-field approximation gives a rather good qualitative description of all these phase transitions.

cond-mat.stat-mech↗

Simulation of Self-Reproducing Micelles using a Lattice-Gas Automaton

We simulate self-reproducing micellar systems using a recently introduced lattice-gas automaton. This dynamical model correctly describes the equilibrium and non-equilibrium properties of mixtures of oil, water and surfactants. The simulations reported here mimic the experiments of Luisi et al. in which caprylate micelles are formed by alkaline hydrolysis of immiscible ethyl caprylate ester. As in the laboratory experiments, we find an extended induction period during which the concentration of micelles remains small; thereafter the ester is consumed very rapidly with concomitant production of micelles.

cond-mat.soft↗