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Comparison of volume-selective z-shim and conventional EPI in fMRI studies using face stimuli

Single-shot gradient recalled echo planar imaging (EPI) is the primary tool for functional magnetic resonance imaging (fMRI). The image often suffers from signal drop near the air-tissue interface, such as the amygdala and regions of the orbitofrontal lobe. An effective way to correct for this type of artifact is by applying multi-shot EPI using different z-shimming. Unfortunately, the scanning efficiency is significantly lowered. More recently, a new technique called volume-selective z-shim was proposed to implement z-shim compensation to only specific slices with large susceptibility effects. The high imaging efficiency of volume selective z-shim makes it possible to substitute conventional EPI for whole brain studies. In this study two fMRI experiments were conducted to compare volume- selective z-shim and conventional EPI while subjects performed tasks on face stimuli. The comparison was focused on three brain regions: amygdala, hippocampus, and fusiform gyrus. Our results indicate that despite fewer volumes collected during the same amount of scan time, volume-selective z-shim showed statistically higher activation in brain regions susceptible to signal loss while minimal differences were observed elsewhere.

physics.med-ph↗

Biomechanical caracterisation of lumbar belt by full-field techniques: Preliminary results

In France, 50% of the population per year is suffering from low back pain. Lumbar belt are frequently proposed as a part of the treatment of this pathology. However mechanical ways of working of this medical device is not clearly understood, but abdominal pressure is often related. So an optical method was developed in this study to measure strain in lumbar belt and trunk interface and to derive a pressure estimation. Optical method consisted of coupling fringe projection and digital image correlation (DIC). Measurement has been carried out on the right side of a manikin wearing a lumbar belt. Average strain is 0.2 and average pressure is 1 kPa. Continuation of this study will be comparison of strain and pressure in different areas of lumbar belt (left side, front and back) and comparison of different lumbar belts. Results will be used in a finite elements model to determine lumbar belt impact in intern body. In long term, this kind of study will be done on human.

physics.med-ph↗

Numerical Methods for Coupled Reconstruction and Registration in Digital Breast Tomosynthesis

Digital Breast Tomosynthesis (DBT) provides an insight into the fine details of normal fibroglandular tissues and abnormal lesions by reconstructing a pseudo-3D image of the breast. In this respect, DBT overcomes a major limitation of conventional X-ray mammography by reducing the confounding effects caused by the superposition of breast tissue. In a breast cancer screening or diagnostic context, a radiologist is interested in detecting change, which might be indicative of malignant disease. To help automate this task image registration is required to establish spatial correspondence between time points. Typically, images, such as MRI or CT, are first reconstructed and then registered. This approach can be effective if reconstructing using a complete set of data. However, for ill-posed, limited-angle problems such as DBT, estimating the deformation is complicated by the significant artefacts associated with the reconstruction, leading to severe inaccuracies in the registration. This paper presents a mathematical framework, which couples the two tasks and jointly estimates both image intensities and the parameters of a transformation. We evaluate our methods using various computational digital phantoms, uncompressed breast MR images, and in-vivo DBT simulations. Firstly, we compare both iterative and simultaneous methods to the conventional, sequential method using an affine transformation model. We show that jointly estimating image intensities and parametric transformations gives superior results with respect to reconstruction fidelity and registration accuracy. Also, we incorporate a non-rigid B-spline transformation model into our simultaneous method. The results demonstrate a visually plausible recovery of the deformation with preservation of the reconstruction fidelity.

cs.CV↗

Simultaneous maximum-likelihood reconstruction for x-ray grating based phase-contrast tomography avoiding intermediate phase retrieval

Phase-wrapping artifacts, statistical image noise and the need for a minimum amount of phase steps per projection limit the practicability of x-ray grating based phase-contrast tomography, when using filtered back projection reconstruction. For conventional x-ray computed tomography, the use of statistical iterative reconstruction algorithms has successfully reduced artifacts and statistical issues. In this work, an iterative reconstruction method for grating based phase-contrast tomography is presented. The method avoids the intermediate retrieval of absorption, differential phase and dark field projections. It directly reconstructs tomographic cross sections from phase stepping projections by the use of a forward projecting imaging model and an appropriate likelihood function. The likelihood function is then maximized with an iterative algorithm. The presented method is tested with tomographic data obtained through a wave field simulation of grating based phase-contrast tomography. The reconstruction results are in agreement with the expectations and proof the validity of the concept.

physics.med-ph↗

In vivo interactions between tungsten microneedles and peripheral nerves

Tungsten microneedles are currently used to insert neural electrodes into living peripheral nerves. However, the biomechanics underlying these procedures is not yet well characterized. For this reason, the aim of this work was to model the interactions between these microneedles and living peripheral nerves. A simple mathematical framework was especially provided to model both compression of the external layer of the nerve (epineurium) and the interactions resulting from penetration of the main shaft of the microneedle inside the living nerves. The instantaneous Young's modulus, compression force, the work needed to pierce the tissue, puncturing pressure, and the dynamic friction coefficient between the tungsten microneedles and living nerves were quantified starting from acute experiments, aiming to reproduce the physical environment of real implantations. Indeed, a better knowledge of the interactions between microneedles and peripheral nerves may be useful to improve the effectiveness of these insertion techniques, and could represent a key factor for designing robot-assisted procedures tailored for peripheral nerve insertion.

cond-mat.soft↗

The role of blood circulatory system in thermal regulation of animals explained by entropy production analysis

A novel model of thermal regulation of homoeothermic animals has been implemented. The model is based on a non-equilibrium thermodynamic approach which introduces entropy balance and the rate of entropy generation as a formulation of The Second Law. The model explains linear correlation between an animals skin and environment temperatures using the first principles and demonstrates the role of blood circulation in the thermoregulation of homoeothermic animals.

q-bio.OT↗

Highly sensitive ammonia sensor using reflection of light at a glass - photonic crystal interface

We have discovered and studied the effect of the asymmetric deformation of a photonic crystal in the form of a change in the slope of the crystal planes as it is filled with a gaseous analyte. We have demonstrated that the use of a new effect leading to the displacement of the stop band against the unchanged spectrum of diffracted white light at the (glass-thin opal film) interface can be used as fast, compact, high sensitive and reproducible optical chemical sensor for ammonia. Low cost and simplicity of sensor fabrication, the response of which can be easily observed without resorting to spectral instruments are therefore likely to be attractive. The basis for high sensitivity (1 ppm), fast response (120 ms) is capillary vapor condensation. On the basis of this effect a cheap high-speed and highly sensitive gas sensors has been built.

physics.optics↗

Intraoral Pressure in Ethnic Wind Instruments

High intraoral pressure generated when playing some wind instruments has been linked to a variety of health issues. Prior research has focused on Western classical instruments, but no work has been published on ethnic wind instruments. This study measured intraoral pressure when playing six classes of ethnic wind instruments (N = 149): Native American flutes (n = 71) and smaller samples of ethnic duct flutes, reed instruments, reedpipes, overtone whistles, and overtone flutes. Results are presented in the context of a survey of prior studies, providing a composite view of the intraoral pressure requirements of a broad range of wind instruments. Mean intraoral pressure was 8.37 mBar across all ethnic wind instruments and 5.21 +/- 2.16 mBar for Native American flutes. The range of pressure in Native American flutes closely matches pressure reported in other studies for normal speech, and the maximum intraoral pressure, 20.55 mBar, is below the highest subglottal pressure reported in other studies during singing. Results show that ethnic wind instruments, with the exception of ethnic reed instruments, have generally lower intraoral pressure requirements than Western classical wind instruments. This implies a lower risk of the health issues related to high intraoral pressure.

physics.med-ph↗

Biological effects and equivalent doses in radiotherapy: a software solution

The limits of TDF (time, dose, and fractionation) and linear quadratic models have been known for a long time. Medical physicists and physicians are required to provide fast and reliable interpretations regarding the delivered doses or any future prescriptions relating to treatment changes. We therefore propose a calculation interface under the GNU license to be used for equivalent doses, biological doses, and normal tumor complication probability (Lyman model). The methodology used draws from several sources: the linear-quadratic-linear model of Astrahan, the repopulation effects of Dale, and the prediction of multi-fractionated treatments of Thames. The results are obtained from an algorithm that minimizes an ad-hoc cost function, and then compared to the equivalent dose computed using standard calculators in seven French radiotherapy centers.

cs.CE↗

Quantum associative memory for the diagnosis of some tropical diseases

In this paper we present a model of Quantum Associative Memory which can be a helpful tool for physicians without experience or laboratory facilities, for the diagnosis of four tropical diseases (malaria, typhoid fever, yellow fever and dengue) which have similar symptoms. The memory can distinguish single infection from multi-infection. The algorithm used for Quantum Associative Memory is an improve model of original algorithm made by Ventura for Quantum Associative Memory. From the simulation results given, it appears that the efficiency of recognition is good when a particular symptom of a disease with a similar symptoms are inserted.

physics.med-ph↗

Monte Carlo Simulation of 6MV Elekta Synergy Platform Linac photon beam using Gate/Geant4

The present work is devoted to develop a computational model using the Gate Monte Carlo software for the simulation of a 6MV photon beam given by Elekta Synergy Platform medical linear accelerator treatment head. The model includes the major components of the multileaf accelerator head and a homogeneous water phantom. Calculations were performed for a photon beam with several treatment fields size ranging from 5*5 cm2 to 30*30 cm2 at 100 cm distance from source. The simulation is successfully validated by comparison with experimental distributions measured at the Regional Hassan II Oncology Center. Good agreement between simulations and measurements was observed, with dose differences of about 1.6% and 1.8% for depth doses and lateral dose profiles, respectively. The gamma index comparisons were also performed where more than 98% of the points for all simulations passed the standard quality assurance criteria of 3mm/3%.

physics.med-ph↗

Measurement of acoustic and anatomic changes in oral and maxillofacial surgery patients

We describe an arrangement for simultaneous recording of speech and geometry of vocal tract in patients undergoing surgery involving this area. Experimental design is considered from an articulatory phonetic point of view. The speech and noise signals are recorded with an acoustic-electrical arrangement. The vocal tract is simultaneously imaged with MRI. A MATLAB-based system controls the timing of speech recording and MR image acquisition. The speech signals are cleaned from acoustic MRI noise by a non-linear signal processing algorithm. Finally, a vowel data set from pilot experiments is compared with validation data from anechoic chamber as well as with Helmholtz resonances of the vocal tract volume.

physics.med-ph↗

Reliability, calibration and metrology in ionizing radiation dosimetry

Radiation dosimetry systems are complex systems, comprised of a milieu of components, designed for determining absorbed dose after exposure to ionizing radiation. Although many materials serve as absorbing media for measurement, thermoluminescent dosimeters represent some of the more desirable materials available; yet, reliability studies have revealed a clear and definite decrement in dosimeter sensitivity after repeated use. Unfortunately, repeated use of any such material for absorbing media in ionizing radiation dosimetry will in time experience performance decrements; thus, in order to achieve the most accuracy and/or precision in dosimetry, it is imperative proper compensation be made in calibration. Yet, analysis proves the majority of the measured decrement in sensitivity experienced by dosimeters is attributable to drift noise and not to any degradation in dosimeter performance, at least, not to any great degree. In addition to investigating dosimeter reliability, implications for metrological traceability and influences for calibration, this monograph addresses certain errors in applied statistics, which are rather alarming habits found in common usage throughout the radiation dosimetry community. This monograph can also be considered a systems analysis of sorts; because, attention to such key topics, so general and essential in nature, produces an effective system analysis, where each principle covered aptly applies to radiation dosimetry systems in general.

physics.med-ph↗

Mechanical Therapy as a Potential Green Way to Attack Cancer Disease

Mechanical force is tightly connected to human health status, and the occurrence of disease can generally be ascribed to certain loss of force balance. However, the role of mechanical approaches in tumor therapy is largely neglected, while the currently available cancer prevention and treatment methods are generally either expensive or just cause too much side effect. In this article, we present a systematic interpretation on a promising strategy which was termed here as Mechanical Therapy for the first time based on the fact that mechanical force closely accompanies the whole life (growth and death) of a cell, and plays a crucial role in biological functions. In order to mold the mechanical force as a practical tool for cancer therapy, we expound the effects of the mechanical force related to the tumors from molecule to tissue level and evaluate its feasibility for treatment purpose. It can be conceived that given enough investigations, the mechanical therapy may generate big potential to open new windows for cancer prevention, relieving or even destroying if well administrated. As an easy going and convenient method, a systematic and thorough study of mechanical therapy may clarify more options for future clinical practices. Besides, when patients encounter various forces in daily life, they can at least identify the good or bad forces for a better and healthy life style based on the mechanisms thus disclosed.

physics.med-ph↗

Asymmetric-detection time-stretch optical microscopy (ATOM) for ultrafast high-contrast cellular imaging in flow

Accelerating imaging speed in optical microscopy is often realized at the expense of image contrast, image resolution, and detection sensitivity- a common predicament for advancing high-speed and high-throughput cellular imaging. We here demonstrate a new imaging approach, called asymmetric-detection time-stretch optical microscopy (ATOM), which can deliver ultrafast label-free high-contrast flow imaging with well delineated cellular morphological resolution and in-line optical image amplification to overcome the compromised imaging sensitivity at high speed. We show that ATOM can separately reveal the enhanced phase-gradient and absorption contrast in microfluidic live-cell imaging at a flow speed as high as ~10 m/s, corresponding to an imaging throughput of ~100,000 cells/sec. ATOM could thus be the enabling platform to meet the pressing need for intercalating optical microscopy in cellular assay, e.g. imaging flow cytometry- permitting high-throughput access to the morphological information of the individual cells simultaneously with a multitude of parameters obtained in the standard assay.

physics.optics↗

Reduced interhemispheric functional connectivity of children with autism: evidence from functional near infrared spectroscopy studies

Autism spectrum disorder is a neuro-developmental disorder characterized by abnormalities of neural synchronization. In this study, functional near infrared spectroscopy (fNIRS) is used to study the difference in functional connectivity in left and right inferior frontal cortices (IFC) and temporal cortices (TC) between autistic and typically developing children between 8-11 years of age. 10 autistic children and 10 typical ones were recruited in our study for 8-min resting state measurement. Results show that the overall interhemispheric correlation of HbO was significantly lower in autistic children than in the controls. In particular, reduced connectivity was found to be most significant in TC area of autism. Autistic children lose the symmetry in the patterns of correlation maps. These results suggest the feasibility of using the fNIRS method to assess abnormal functional connectivity of the autistic brain and its potential application in autism diagnosis.

q-bio.NC↗

Colloquium: Mechanical formalisms for tissue dynamics

The understanding of morphogenesis in living organisms has been renewed by tremendous progressin experimental techniques that provide access to cell-scale, quantitative information both on theshapes of cells within tissues and on the genes being expressed. This information suggests that ourunderstanding of the respective contributions of gene expression and mechanics, and of their crucialentanglement, will soon leap forward. Biomechanics increasingly benefits from models, which assistthe design and interpretation of experiments, point out the main ingredients and assumptions, andultimately lead to predictions. The newly accessible local information thus calls for a reflectionon how to select suitable classes of mechanical models. We review both mechanical ingredientssuggested by the current knowledge of tissue behaviour, and modelling methods that can helpgenerate a rheological diagram or a constitutive equation. We distinguish cell scale ("intra-cell")and tissue scale ("inter-cell") contributions. We recall the mathematical framework developpedfor continuum materials and explain how to transform a constitutive equation into a set of partialdifferential equations amenable to numerical resolution. We show that when plastic behaviour isrelevant, the dissipation function formalism appears appropriate to generate constitutive equations;its variational nature facilitates numerical implementation, and we discuss adaptations needed in thecase of large deformations. The present article gathers theoretical methods that can readily enhancethe significance of the data to be extracted from recent or future high throughput biomechanicalexperiments.

physics.bio-ph↗