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arXiv2014

Vacuum-UV spectroscopy of interstellar ice analogs. II. Absorption cross-sections of nonpolar ice molecules

Dust grains in cold circumstellar regions and dark-cloud interiors at 10-20 K are covered by ice mantles. A nonthermal desorption mechanism is invoked to explain the presence of gas-phase molecules in these environments, such as the photodesorption induced by irradiation of ice due to secondary ultraviolet photons. To quantify the effects of ice photoprocessing, an estimate of the photon absorption in ice mantles is required. In a recent work, we reported the vacuum-ultraviolet (VUV) absorption cross sections of nonpolar molecules in the solid phase. The aim was to estimate the VUV-absorption cross sections of nonpolar molecular ice components, including CH4, CO2, N2, and O2. The column densities of the ice samples deposited at 8 K were measured in situ by infrared spectroscopy in transmittance. VUV spectra of the ice samples were collected in the 120-160 nm (10.33-7.74 eV) range using a commercial microwave-discharged hydrogen flow lamp. We found that, as expected, solid N2 has the lowest VUV-absorption cross section, which about three orders of magnitude lower than that of other species such as O2, which is also homonuclear. Methane (CH4) ice presents a high absorption near Ly-alpha (121.6 nm) and does not absorb below 148 nm. Estimating the ice absorption cross sections is essential for models of ice photoprocessing and allows estimating the ice photodesorption rates as the number of photodesorbed molecules per absorbed photon in the ice.

astro-ph.SR↗

arXiv2014

On the relevance of the H2 + O reaction pathway for the surface formation of interstellar water - A combined experimental and modeling study

The formation of interstellar water has been commonly accepted to occur on the surfaces of icy dust grains in dark molecular clouds at low temperatures (10-20 K), involving hydrogenation reactions of oxygen allotropes. As a result of the large abundances of molecular hydrogen and atomic oxygen in these regions, the reaction H2 + O has been proposed to contribute significantly to the formation of water as well. However, gas phase experiments and calculations, as well as solid-phase experimental work contradict this hypothesis. Here, we use precisely executed temperature programmed desorption (TPD) experiments in an ultra-high vacuum setup combined with kinetic Monte Carlo simulations to establish an upper limit of the water production starting from H2 and O. These reactants are brought together in a matrix of CO2 in a series of (control) experiments at different temperatures and with different isotopological compositions. The amount of water detected with the quadrupole mass spectrometer upon TPD is found to originate mainly from contamination in the chamber itself. However, if water is produced in small quantities on the surface through H2 + O, this can only be explained by a combined classical and tunneled reaction mechanism. An absolutely conservative upper limit for the reaction rate is derived with a microscopic kinetic Monte Carlo model that converts the upper limit into a maximal possible reaction rate. Incorporating this rate into simulations run for astrochemically relevant parameters, shows that the upper limit to the contribution of the reaction H2 + O in OH, and hence water formation, is 11% in dense interstellar clouds. Our combined experimental and theoretical results indicate however, that this contribution is likely to be much lower.

astro-ph.GA↗

arXiv2014

Laboratory spectroscopy of 1,2-propanediol at millimeter and submillimeter wavelengths

Ethanediol is one of the largest complex organic molecules detected in space thus far. It has been found in different types of molecular clouds. The two propanediol isomers are the next larger diols. Hence, they are viable candidates to be searched for in space. We wish to provide sufficiently large and accurate sets of spectroscopic parameters of 1,2-propanediol to facilitate searches for this molecule at millimeter and longer submillimeter wavelengths. We recorded rotational spectra of 1,2-propanediol in three wide frequency windows between 38 and 400~GHz. We made extensive assignments for the three lowest energy conformers to yield spectroscopic parameters up to eighth order of angular momentum. Our present data will be helpful for identifying 1,2-propanediol at moderate submillimeter or longer wavelengths with radio telescope arrays such as ALMA, NOEMA, or EVLA. In particular, its detection with ALMA in sources, in which ethanediol was detected, appears to be promising.

physics.atm-clus↗

arXiv2014

Coronene and pyrene (5, 7)-member ring defects: Infrared spectra, energetics and alternative formation pathways

PAHs are known to be one of the carriers of the ubiquitous aromatic IR bands. The IR spectra of many objects show IR emission features derived from PAH molecules of different size. Still some of the characteristics of the emitting population remain unclear. The emission bands show details which cannot be explained so far. These unidentified IR features require further laboratory and observational investigations. We present a theoretical study of the IR spectra of PAHs containing (5,7)-member ring defects, focusing on pyrene and coronene. Using density functional theory, we investigate the effects of such defects on the IR spectra of pyrene and coronene and their cations and anions. In addition, we explore parts of the potential energy surface of the neutral species and discuss alternative formation pathways. The addition of (5,7)-membered ring defects in pyrene and coronene results in a change of the IR spectra, both molecules lose their typical spectroscopic signature. We find shifts in the positions of the band as well as different intensities and a rise in the number of features. The boundaries in terms of the size of the PAHs exhibiting a (5,7)-membered ring defect are studied and shown. Investigation of the minimal energy pathway leads to a result of 8.21 eV for pyrene and 8.41 eV for coronene as minimum activation barriers for the transformation from ground state to defected state. Whereas pyrene retains some of its symmetry due to the symmetry exhibited by the Stone-Wales defect itself, coronene loses much more of its symmetry. The formation of these (5,7)-ring defects in PAHs may be well supported in AGB stars or PNe. Those environments strongly enable the transition from the ground state to the defect state. Therefore the knowledge of the IR spectra of these molecules will support future investigations aiming for a thorough understanding of the unidentified IR emission bands.

astro-ph.SR↗

arXiv2014

Diffusion-desorption ratio of adsorbed CO and CO$_2$ on water ice

Diffusion of atoms and molecules is a key process for the chemical evolution in the star forming regions of the interstellar medium. Accurate data on the mobility of many important interstellar species is however often not available and this provides a serious limitation for the reliability of models describing the physical and chemical processes in molecular clouds. Here we aim to provide the astrochemical modeling community with reliable data on the ratio between the energy barriers for diffusion and desorption for adsorbed CO and CO$_2$ on water ices. To this end, we use a fully atomistic, off-lattice kinetic Monte Carlo technique to generate dynamical trajectories of CO and CO$_2$ molecules on the surface of crystalline ice at temperatures relevant for the interstellar medium. The diffusion to desorption barrier ratios are determined to be 0.31 for CO and 0.39 for CO$_2$ . These ratios can be directly used to improve the accuracy of current gas-grain chemical models.

astro-ph.GA↗

arXiv2018

Anharmonicity and the infrared emission spectrum of highly excited PAHs

Aims. Infrared (IR) spectroscopy is a powerful tool to study molecules in space. A key issue in such analyses is understanding the effect that temperature and anharmonicity have on different vibrational bands, and thus interpreting the IR spectra for molecules under various conditions. Methods. We combined second order vibrational perturbation theory and the Wang-Landau random walk technique to produce accurate IR spectra of highly excited PAHs. We fully incorporated anharmonic effects, such as resonances, overtones, combination bands, and temperature effects. Results. The results are validated against experimental results for the pyrene molecule (C16H10). In terms of positions, widths, and relative intensities of the vibrational bands, our calculated spectra are in excellent agreement with gas-phase experimental data.

astro-ph.IM↗

arXiv2018

HSCO$^+$ and DSCO$^+$: a multi-technique approach in the laboratory for the spectroscopy of interstellar ions

Protonated molecular species have been proven to be abundant in the interstellar gas. This class of molecules is also pivotal for the determination of important physical parameters for the ISM evolution (e.g. gas ionisation fraction) or as tracers of non-polar, hence not directly observable, species. The identification of these molecular species through radioastronomical observations is directly linked to a precise laboratory spectral characterisation. The goal of the present work is to extend the laboratory measurements of the pure rotational spectrum of the ground electronic state of protonated carbonyl sulfide (HSCO$^+$) and its deuterium substituted isotopomer (DSCO$^+$). At the same time, we show how implementing different laboratory techniques allows the determination of different spectroscopical properties of asymmetric-top protonated species. Three different high-resolution experiments were involved to detected for the first time the $b-$type rotational spectrum of HSCO$^+$, and to extend, well into the sub-millimeter region, the $a-$type spectrum of the same molecular species and DSCO$^+$. The electronic ground-state of both ions have been investigated in the 273-405 GHz frequency range, allowing the detection of 60 and 50 new rotational transitions for HSCO$^+$ and DSCO$^+$, respectively. The combination of our new measurements with the three rotational transitions previously observed in the microwave region permits the rest frequencies of the astronomically most relevant transitions to be predicted to better than 100 kHz for both HSCO$^+$ and DSCO$^+$ up to 500 GHz, equivalent to better than 60 m/s in terms of equivalent radial velocity. The present work illustrates the importance of using different laboratory techniques to spectroscopically characterise a protonated species at high frequency, and how a similar approach can be adopted when dealing with reactive species.

astro-ph.GA↗

arXiv2019

Deuterated methyl mercaptan (CH$_3$SD): Laboratory rotational spectroscopy and search toward IRAS 16293-2422 B

Methyl mercaptan (also known as methanethiol), CH3SH, has been found in the warm and dense parts of high -- as well as low -- mass star-forming regions. The aim of the present study is to obtain accurate spectroscopic parameters of the S-deuterated methyl mercaptan CH$_3$SD to facilitate astronomical observations by radio telescope arrays at (sub)millimeter wavelengths. We have measured the rotational spectrum associated with the large-amplitude internal rotation of the methyl group of methyl mercaptan using an isotopically enriched sample in the 150-510 GHz frequency range using the Köln millimeter wave spectrometer. The analysis of the spectra has been performed up to the second excited torsional state. We present modeling results of these data with the RAM36 program. CH$_3$SD was searched for, but not detected, in data from the Atacama Large Millimeter/submillimeter Array (ALMA) Protostellar Interferometric Line Survey (PILS) of the deeply embedded protostar IRAS 16293-2422. The derived upper limit corresponds to a degree of deuteration of at most ~18%.

astro-ph.SR↗

arXiv2019

Laboratory spectroscopic study of the $^{15}$N isotopomers of cyanamide, H$_2$NCN, and a search for them toward IRAS 16293$-$2422 B

Cyanamide is one of the few interstellar molecules containing two chemically different N atoms. It was detected recently toward the solar-type protostar IRAS 16293-2422 B together with H$_2$N$^{13}$CN and HDNCN in the course of the Atacama Large Millemeter/submillimeter Array (ALMA) Protostellar Interferometric Line Survey (PILS). The detection of the 15N isotopomers or the determination of upper limits to their column densities was hampered by the lack of accurate laboratory data at the frequencies of the survey. We wanted to determine spectroscopic parameters of the $^{15}$N isotopomers of cyanamide that are accurate enough for predictions well into the submillimeter region and to search for them in the PILS data. We investigated the laboratory rotational spectra of H$_2^{15}$NCN and H$_2$NC$^{15}$N in the selected region between 192 and 507~GHz employing a cyanamide sample in natural isotopic composition. Additionally, we recorded transitions of H$_2$N$^{13}$CN. We obtained new or improved spectroscopic parameters for the three isotopic species. Neither of the $^{15}$N isotopomers of cyanamide were detected unambiguously in the PILS data. Two relatively clean lines can be tentatively assigned to H$_2^{15}$NCN. If confirmed, their column densities would imply a low $^{14}$N/$^{15}$N ratio for cyanamide toward this source. The resulting line lists should be accurate enough for observations up to about 1 THz. More sensitive observations, potentially at different frequencies, may eventually lead to the astronomical detection of these isotopic species.

astro-ph.SR↗

arXiv2018

A phase field approach to no slip boundary conditions in dissipative particle dynamics and other particle models for fluid flow in geometrically complex confined systems

Dissipative particle dynamics (DPD) is an effective mesoscopic particle model with a lower computational cost than molecular dynamics because of the soft potentials that it employs. However, the soft potential is not strong enough to prevent the DPD particles that are used to represent the fluid from penetrating solid boundaries represented by stationary DPD particles. A phase field variable, , is used to indicate the phase at point and time t, with a smooth transition from -1 (phase 1) to +1 (phase 2) across the interface. We describe an efficient implementation of no-slip boundary conditions in DPD models that combines solid-liquid particle-particle interactions with reflection at a sharp boundary located with subgrid scale accuracy using the phase field. This approach can be used for arbitrarily complex flow geometries and other similar particle models (such as smoothed particle hydrodynamics), and the validity of the model is demonstrated by DPD simulations of flow in confined systems with various geometries.

physics.comp-ph↗

arXiv2014

Range-separated density-functional theory with random phase approximation applied to noncovalent intermolecular interactions

Range-separated methods combining a short-range density functional with long-range random phase approximations RPAs with or without exchange response kernel are tested on rare-gas dimers and the S22 benchmark set of weakly interacting complexes of Jurecka et al. [Phys. Chem. Chem. Phys. 8, 1985 (2006 )] . The methods are also compared to full-range RPA approaches. Both range separation and inclusion of the Hartree-Fock exchange kernel largely improve the accuracy of intermolecular interaction energies. The best results are obtained with the method called RSH+RPAx, which yields interaction energies for the S22 set with an estimated mean absolute error of about 0.5-0.6 kcal/mol, corresponding to a mean absolute percentage error of about 7%-9% depending on the reference interaction energies used. In particular, the RSH+RPAx method is found to be overall more accurate than the range-separated method based on long-range second-order Møller-Plesset MP2 perturbation theory RSH+MP2 .

physics.chem-ph↗

arXiv2010

Dielectric decrement as a source of ion specific effects

Many theoretical studies were devoted in the past to ion-specific effects, trying to interpret a large body of experimental evidence, such as surface tension at air/water interfaces and force measurements between charged objects. Although several mechanisms were suggested to explain the results, such as dispersion forces and specific surface-ion interactions, we would like to suggest another source of ion-specificity, originating from the local variations of the dielectric constant due to the presence of ions in the solution. We present a mean-field model to account for the heterogeneity of the dielectric constant caused by the ions. In particular, for ions that decrease the dielectric constant we find a depletion of ions from the vicinity of charged surfaces. For a two-plate system, the same effect leads to an increase of the pressure in between two surfaces. Our results suggest that the effect of ions on the local dielectric constant should be taken into account when interpreting experiments that address ion-specific effects.

cond-mat.soft↗

arXiv2018

A Generalized Mathematical Framework for Thermal Oxidation Kinetics

We present a generalized mathematical model for thermal oxidation and the growth kinetics of oxide films. The model expands long-standing classical models by taking into account the reaction occurring at the interface as well as transport processes in greater details. The standard Deal-Grove model (the linear-parabolic rate law) relies on the assumption of quasi-static diffusion that results in a linear concentration profile of, for example, oxidant species in the oxide layer. By relaxing this assumption and resolving the entire problem, three regimes can be clearly identified corresponding to different stages of oxidation. Namely, the oxidation starts with the reaction-controlled regime (described by a linear rate law), is followed by a transitional regime (described by a logarithmic or power law depending on the stoichiometry coefficient m), and ends with the well known diffusion-controlled regime (described by a parabolic rate law). Deal-Grove's theory is shown to be the lower order approximation of the proposed model. Various oxidation rate laws are unified into a single model to describe the entire oxidation process.

physics.chem-ph↗

arXiv2011

A new parametrizable model of molecular electronic structure

A new electronic structure model is developed in which the ground state energy of a molecular system is given by a Hartree-Fock-like expression with parametrized one- and two-electron integrals over an extended (minimal + polarization) set of orthogonalized atom-centered basis functions, the variational equations being solved formally within the minimal basis but the effect of polarization functions being included in the spirit of second-order perturbation theory. It is designed to yield good dipole polarizabilities and improved intermolecular potentials with dispersion terms. The molecular integrals include up to three-center one-electron and two-center two-electron terms, all in simple analytical forms. A method to extract the effective one-electron Hamiltonian of nonlocal-exchange Kohn-Sham theory from the coupled-cluster one-electron density matrix is designed and used to get its matrix representation in a molecule-intrinsic minimal basis as an input to the paramtrization procedure -- making a direct link to the correlated wavefunction theory. The model has been trained for 15 elements (H, Li--F, Na--Cl, 720 parameters) on a set of 5581 molecules (including ions, transition states, and weakly-bound complexes) whose first- and second-order properties were computed by the coupled-cluster theory as a reference, and a good agreement is seen. The model looks promising for the study of large molecular systems, it is believed to be an important step forward from the traditional semiempirical models towards higher accuracy at nearly as low a computational cost.

physics.chem-ph↗

arXiv2014

A spin-adapted Density Matrix Renormalization Group algorithm for quantum chemistry

We extend the spin-adapted density matrix renormalization group (DMRG) algorithm of McCulloch and Gulacsi [Europhys. Lett.57, 852 (2002)] to quantum chemical Hamiltonians. This involves two key modifications to the non-spin-adapted DMRG algorithm: the use of a quasi-density matrix to ensure that the renormalised DMRG states are eigenvalues of $S^2$ , and the use of the Wigner-Eckart theorem to greatly reduce the overall storage and computational cost. We argue that the advantages of the spin-adapted DMRG algorithm are greatest for low spin states. Consequently, we also implement the singlet-embedding strategy of Nishino et al [Phys. Rev. E61, 3199 (2000)] which allows us to target high spin states as a component of a mixed system which is overall held in a singlet state. We evaluate our algorithm on benchmark calculations on the Fe$_2$S$_2$ and Cr$_2$ transition metal systems. By calculating the full spin ladder of Fe$_2$S$_2$ , we show that the spin-adapted DMRG algorithm can target very closely spaced spin states. In addition, our calculations of Cr$_2$ demonstrate that the spin-adapted algorithm requires only roughly half the number of renormalised DMRG states as the non-spin-adapted algorithm to obtain the same accuracy in the energy, thus yielding up to an order of magnitude increase in computational efficiency.

physics.chem-ph↗

arXiv2012

Ultrafast Photo-Induced Charge Transfer Unveiled by Two-Dimensional Electronic Spectroscopy

The interaction of exciton and charge transfer (CT) states plays a central role in photo-induced CT processes in chemistry, biology and physics. In this work, we use a combination of two-dimensional electronic spectroscopy (2D-ES), pump-probe measurements and quantum chemistry to investigate the ultrafast CT dynamics in a lutetium bisphthalocyanine dimer in different oxidation states. It is found that in the anionic form, the combination of strong CT-exciton interaction and electronic asymmetry induced by a counter-ion enables CT between the two macrocycles of the complex on a 30 fs timescale. Following optical excitation, a chain of electron and hole transfer steps gives rise to characteristic cross-peak dynamics in the electronic 2D spectra, and we monitor how the excited state charge density ultimately localizes on the macrocycle closest to the counter-ion within 100 fs. A comparison with the dynamics in the radical species further elucidates how CT states modulate the electronic structure and tune fs-reaction dynamics. Our experiments demonstrate the unique capability of 2D-ES in combination with other methods to decipher ultrafast CT dynamics.

physics.chem-ph↗

arXiv2018

A Generalized Kinetic Model for Heterogeneous Gas-Solid Reactions

We present a generalized kinetic model for gas-solid heterogeneous reactions taking place at the interface between two phases. The model studies the reaction kinetics by taking into account the reactions at the interface, as well as the transport process within the product layer. The standard unreacted shrinking core model relies on the assumption of quasi-static diffusion that results in a steady-state concentration profile of gas reactant in the product layer. By relaxing this assumption and resolving the entire problem, general solutions can be obtained for reaction kinetics, including the reaction front velocity and the conversion (volume fraction of reacted solid). The unreacted shrinking core model is shown to be accurate and in agreement with the generalized model for slow reaction (or fast diffusion), low concentration of gas reactant, and small solid size. Otherwise, a generalized kinetic model should be used.

physics.chem-ph↗

arXiv2012

Finite temperature electronic simulations beyond the Born-Oppenheimer approximation

We introduce a general technique to compute finite temperature electronic properties by a novel covariant formulation of the electronic partition function. By using a rigorous variational upper bound to the free energy we are led to the evaluation of a partition function that can be computed stochastically by sampling electronic wave functions and atomic positions (assumed classical). In order to achieve this target we show that it is extremely important to consider the non trivial geometry of the space defined by the wave function ansatz. The method can be extended to any technique capable to provide an energy value over a given wave function ansatz depending on several variational parameters and atomic positions. In particular we can take into account electronic correlation, by using the standard variational quantum Monte Carlo method, that has been so far limited to zero temperature ground state properties. We show that our approximation reduces correctly to the standard Born-Oppenheimer (BO) one at zero temperature and to the correct high temperature limit. At large enough temperatures this method allows to improve the BO, providing lower values of the electronic free energy, because within this method it is possible to take into account the electron entropy. We test this new method on the simple hydrogen molecule, where at low temperature we recover the correct BO low temperature limit. Moreover, we show that the dissociation of the molecule is possible at a temperature much smaller than the BO prediction. Several extension of the proposed technique are also discussed, as for instance the calculation of critical (magnetic, superconducting) temperatures, or transition rates in chemical reactions.

cond-mat.str-el↗