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Efficient reduction of stellar contamination and noise in planetary transmission spectra using neural networks

The characterization of exoplanetary atmospheres has been transformed by the James Webb Space Telescope (JWST), whose infrared sensitivity enables transmission spectroscopy at unprecedented precision. However, stellar heterogeneities (e.g., spots and faculae) remain a dominant source of contamination that can bias atmospheric retrievals if not properly corrected. We present a methodology for reducing stellar contamination and instrument-specific noise from exoplanet transmission spectra using neural networks, in particular the so-called Denoising AutoEncoders (DAEs). Our goals are to enable fast, accurate corrections that improve the reliability of atmospheric parameter retrievals and to promote the use of unsupervised algorithms for efficient data processing. We designed and trained DAE architectures using large synthetic datasets of terrestrial (TRAPPIST-1e analogues) and sub-Neptune (K2-18b analogues) planets. Atmospheric retrieval experiments were then performed on contaminated spectra in order to compare our deep-learning approach against standard correction methods in terms of accuracy and computational cost. Our autoencoders successfully reconstruct uncontaminated spectra, preserving essential molecular features even in low-S/N regimes. In retrieval tests, the denoising autoencoder pre-processing yields atmospheric parameter estimates broadly comparable to those obtained with simultaneous stellar-contamination fitting. Notably, our method maintains a much lower computational cost, approximately one order of magnitude smaller. These results demonstrate that DAEs outperform conventional correction methods in computational efficiency while maintaining high accuracy, paving the way for their integration into future atmospheric characterization pipelines for both rocky and sub-Neptune exoplanets.

astro-ph.EP

Three-dimensional Conditional Diffusion Models for Cosmological 21 cm Lightcone Emulation

We investigate conditional diffusion modeling for three-dimensional 21 cm lightcone emulation, focusing on cubes with a sky-plane size of $64\times64$ and a line-of-sight depth up to 1024 cells. Relative to earlier 2D studies, the 3D setting is substantially harder because memory limits enforce very small micro-batches while the underlying voxel distribution is highly skewed and long tailed. We perform controlled comparisons across preprocessing choices, dynamic-range compression settings, architecture depth, and training duration using $25{,}600$ training lightcones and validation ensembles at fixed parameter points. For validation, each reference parameter point contains 800 21cmFAST realizations with independent initial conditions, and we use 800 samples per model and per reference set for the reported ensemble comparisons. We evaluate generated lightcones with complementary diagnostics in both image and summary-statistic spaces: brightness-temperature slices, the global signal, the power spectrum, and reduced scattering coefficients. Across the tested configurations, preprocessing is the dominant factor governing stable training and the resulting physical fidelity. Among the configurations explored here, Yeo-Johnson preprocessing combined with moderate amplitude compression gives the most consistently favorable trade-off, with the strongest quantitative support coming from rankings based on the standard-deviation-normalized mean absolute error ($\mathrm{MAE}_{\rm std}$) of the global signal and qualitatively compatible behavior in the complementary diagnostics. At the same time, visually plausible 3D samples still retain measurable biases in two-point and higher-order statistics. We therefore view the present work as a simulation-level baseline for three-dimensional 21 cm emulation and for future studies that incorporate more realistic observational effects.

astro-ph.IM

Efficient Context-Limited Telescope Bibliography Classification for the WASP-2025 Shared Task Using SciBERT

The creation of telescope bibliographies is a crucial part of assessing the scientific impact of observatories and ensuring reproducibility in astronomy. This task involves identifying, categorizing, and linking scientific publications that reference or use specific telescopes. However, this process remains largely manual and resource intensive. In this work, we present an efficient SciBERT-based approach for automatic classification of scientific papers into four categories - science, instrumentation, mention, and not telescope. Despite strict context-length constraints (maximum 512 tokens) and limited compute resources, our approach achieved a macro F1 score of 0.89, ranking at the top of the WASP-2025 leaderboard. We analyze the effect of truncation and show that even with half the samples exceeding the token limit, SciBERT's domain alignment enables robust classification. We discuss trade-offs between truncation, chunking, and long-context models, providing insights into the efficiency frontier for scientific text curation.

cs.LG

Generative Diffusion Surrogates with Analytical Variance Schedule

Stochastic transport describes physical systems in which an initially structured distribution spreads under unresolved forcing, scattering, or heterogeneous media. Useful surrogates for such systems should be probabilistic, time-resolved, and able to represent non-Gaussian distributional structure. Generative diffusion models, which corrupt data with Gaussian noise and learn a reverse flow back to structured states, have these properties. Their noise schedules, however, are usually chosen heuristically: image and audio generation---the canonical use cases---provide no physical clock. In transport, by contrast, the variance, or mean-square displacement, is often known from macroscopic theory or empirical scaling even when the full distribution is not. Here we prescribe the forward noising rate as the time derivative of this variance, turning generative time into a calibrated transport clock. The variance path is enforced by construction, while the learned score field represents how non-Gaussian structure inherited from entrance data is smoothed along that path, requiring no intermediate-time physical transport data. For ballistic-to-diffusive transport in turbulent plasmas, the surrogate matches test-particle distributions, reproduces the laboratory-measured variance scale, and tracks the simulated kurtosis evolution without schedule tuning, enabling calibrated emulation and likelihood-based inference.

cs.LG

Denoising the Deep Sky: Physics-Based CCD Noise Formation for Astronomical Imaging

Astronomical imaging remains noise-limited under practical observing conditions. Standard calibration pipelines remove structured artifacts but largely leave stochastic noise unresolved. Although learning-based denoising has shown strong potential, progress is constrained by scarce paired training data and the requirement for physically interpretable models in scientific workflows. We propose a physics-based noise synthesis framework tailored to CCD noise formation in the telescope. The pipeline models photon shot noise, photo-response non-uniformity, dark-current noise, readout effects, and localized outliers arising from cosmic-ray hits and hot pixels. To obtain low-noise inputs for synthesis, we stack multiple unregistered exposures to produce high-SNR bases. Realistic noisy counterparts synthesized from these bases using our noise model enable the construction of abundant paired datasets for supervised learning. Extensive experiments on our real-world multi-band dataset curated from two ground-based telescopes demonstrate the effectiveness of our framework in both photometric and scientific accuracy.

astro-ph.IM

Auditing Frozen-Encoder Anomaly Detection Across Mechanical Systems: Representation Provenance, Calibration, and Protocol Effects

This version reports a reproducibility audit of the frozen-encoder experiments presented in version 1. The numerical discrimination results are reproducible from the preserved artifacts, but their original attribution to interferometric pretraining is not supported. The released checkpoint contains a nested model state that loads without missing parameters, whereas loading the outer checkpoint dictionary leaves almost the entire EfficientNet-B0 feature stack uninitialized. Preserved embeddings labelled as interferometric have norms of order $10^{-12}$, matching freshly initialized EfficientNet-B0 networks and differing by more than twelve orders of magnitude from the preserved ImageNet embeddings. A second, separately preserved near-zero embedding set produces almost the same IMS 4th-test anomaly scores ($r=0.987$) and record-level discrimination (AUC $0.9812$ versus $0.9818$). We therefore withdraw the causal claim that IMS performance demonstrates a morphological prior transferred from gravitational-wave instrumentation. We reanalyse the controlled IMS splits at matched observed false-positive rates and add multivariate classical signal baselines. The near-zero representations retain strong tail separation, particularly in the 2nd and 4th IMS runs, but this is now interpreted as an exploratory architecture-and-initialization effect coupled to Mahalanobis scoring. A separate PRONOSTIA audit shows that the original large warning times were induced by a lifetime-fraction baseline; under fixed-time evaluation, a ten-feature classical baseline outperforms the preserved encoder scores. These results illustrate how checkpoint provenance, finite-sample calibration, architecture, and target-domain baselines can create an appearance of cross-domain transfer. They also define the controls required before assigning physical meaning to frozen-representation anomaly scores.

astro-ph.IM

Horizon-Dependent Tube MPC for Elliptical-Orbit Rendezvous Under Mass Uncertainty

A spacecraft closing on a target from three hundred kilometres to contact flies one guidance law across five orders of magnitude of range, and a controller that is provably safe at close range can lose that guarantee completely at long range while continuing to fly as though nothing were wrong. This paper derives the range at which the guarantee lapses and uses it as a design rule. The bound compares the prediction model's own linearisation error against the disturbance set the controller was built to reject, and needs only the sampling period, the orbit and that disturbance bound, so it can be evaluated before any simulation. On a Mars Sample Return approach it disqualifies the homing phase, where most of the propellant is spent, and clears the other two. Re-posing the disqualified phase in relative orbital elements restores the guarantee; re-posing a phase the rule already clears, in a frame two orders of magnitude more accurate, changes propellant by under a tenth of one per cent, and it is that second prediction that makes the rule falsifiable rather than descriptive. The constraint tightening also ties the prediction horizon to feasibility, so the horizon search limit becomes a mission parameter rather than a solver setting. Against a reimplementation of a published benchmark that reproduces its propellant to within one per cent, over five hundred dispersed Monte Carlo transfers per case on matched seeds, the controller saves 29% of the propellant on a circular target orbit and 40% on an eccentric one, docking inside the 0.20 m capture requirement on essentially every draw at a median miss near 5 cm. Two results run the other way: the saving is bought with time of flight and computation, and it comes from what the guarantee demanded of the terminal condition rather than from better disturbance rejection. Recursive feasibility and asymptotic stability are not claimed.

eess.SY

Families of relative periodic orbits in the planar three-body problem via consecutive alignments

Relative periodic orbits (RPOs) are solutions of the three-body problem that are periodic in a uniformly rotating reference frame and, in general, quasi-periodic in inertial coordinates. We present a numerical procedure for computing and continuing one-parameter families of RPOs of the planar Newtonian three-body problem. The method exploits consecutive syzygies, understood here as configurations in which the three bodies are aligned and their velocities satisfy the corresponding symmetry conditions. Matching the positions and momenta at two consecutive alignments reduces the computation of RPOs to a low-dimensional nonlinear problem. Its solutions are then numerically continued, and linear stability is determined from the nontrivial eigenvalues of the rotated monodromy matrix after removing the neutral directions associated with conserved quantities and continuous symmetries. The procedure is applied to several mass distributions and initial configurations, producing families of Poincaré, Hill, and binary-type solutions. These families exhibit transitions from nearly circular to highly eccentric motion, changes of stability near resonances and turning points, and absolute periodic solutions when the rotation angle is a rational multiple of 2π. In the Hill families, the continuation connects satellite configurations with circumstellar motion as the smallest body loses its gravitational binding to the intermediate body. Circumbinary and circumstellar configurations are also obtained in the binary regime. The results illustrate the dynamical diversity of RPOs and provide coherent three-body motions that can be used as prescribed trajectories in restricted four-body models.

math.DS

Accelerating Chemical Kinetics for Exoplanet Atmospheres using Neural Networks

Observations increasingly reveal the coupled radiative, chemical, and dynamical processes that shape exoplanet atmospheres. Interpreting these atmospheres requires models that can capture this complexity. However, multidimensional models remain fundamentally limited by computational cost, and answering key questions requires simulating the governing physical mechanisms at speeds classical methods cannot achieve. As a result, models often rely on simplifying approximations, such as equilibrium chemistry, even when those assumptions miss important effects. There is a pressing need for fast and accurate chemical kinetics solvers to model planetary atmospheres. Here we present a machine learning local-box chemical kinetics solver for exoplanet atmospheres using a residual flow-map architecture. We demonstrate that this surrogate model is several orders of magnitude faster than a classical solver, achieving microsecond-scale inference while retaining percent-level accuracy. The surrogate model covers a parameter space that spans $T=300$-$3000$ K, $P=10^{-6}$-$10^{4}$ bar, $Δt=10^{-3}$-$10^{8}$ s, and compositions ranging from $10^{-2}$ to $10^{3}$ times solar in both C/O ratio and metallicity. Our model outperforms several commonly used machine learning architectures and performs robustly under the extreme stiffness characteristic of atmospheric chemistry. The machine learning framework presented here is a flexible and efficient approach to emulating state-to-state flow-map problems that commonly arise in numerical simulations.

astro-ph.EP

DeepHSIC: Deep Learning-based Signal Detector for Hybrid Downlink IM-NOMA

DeepHSIC is introduced as a neural receiver for hybrid downlink IM-NOMA transmission. The considered scheme combines power-domain NOMA with a composite OFDM/OFDM-IM waveform, so that user information is mapped jointly onto constellation symbols, subcarrier-index patterns, and different power levels. Although maximum-likelihood detection can achieve strong reliability for this model, its search space grows rapidly with the number of users and subcarriers. Conventional SIC reduces part of this burden, but its sequential cancellation may still accumulate errors and does not fully exploit the structure of IM-NOMA signals. To address this limitation, the proposed detector embeds dedicated deep neural network modules into the receiver and replaces the most computationally demanding SIC operations with learned inference blocks. The receiver is trained for Rayleigh fading channels and uses preprocessed channel-output features to recover user symbols. Simulation results show that DeepHSIC reaches BER performance close to model-based detectors under both perfect and imperfect CSI while requiring substantially lower detection time. These results indicate that learned SIC-style detection is a practical candidate for scalable hybrid downlink IM-NOMA receivers.

cs.IT

Real-Time Dynamics-Based Torque-Sampling MPPI for Compliant and Force Aware Manipulation

This study proposes a novel Model Predictive Path Integral (MPPI)-based task-space control framework. The proposed framework explicitly solves rigid-body dynamics within a real-time MPC formulation and enforces safety constraints, enabling accurate motion and force control that yields compliant behaviors for safe and effective physical interaction of robotic manipulators in unstructured environments. By leveraging MPPI, the proposed framework efficiently handles nonlinear dynamics that are difficult to solve with conventional MPC approaches in real-time. Furthermore, we develop a torque-sampling-based control architecture that enables efficient exploitation of GPU-based parallelization, resulting in effective compliant and force-aware behaviors. As a result, the proposed framework achieves a solver update rate of over 166 Hz with a 0.18 s prediction horizon, and its performance is validated through real-world experiments on a 7-DoF manipulator.

cs.RO

Inverse design of bespoke interatomic potentials via active learning by information-matching

Interatomic potentials (IPs) enable large-scale atomistic simulations beyond the reach of first-principles methods, but their predictive reliability depends critically on the selection of training data, quantified uncertainty, and model expressiveness. Active learning (AL) provides a principled framework for constructing efficient and accurate IPs, yet most strategies reduce parameter uncertainty without explicitly accounting for the specific material properties being predicted. The information-matching (IM) approach addresses this limitation by requiring that the selected training data provide at least as much parameter space information as needed to achieve prescribed uncertainty targets for selected quantities of interest (QoIs). Here, we apply IM to develop bespoke IPs specifically tailored for predicting plastic strength in metals. Due to the high computational cost of simulating plastic strength, we employ an indirect IM strategy that targets inexpensive intermediate QoIs that correlate with strength. The IM method enables precise parameter constraints with minimal training data, yielding precise predictions for both the intermediate QoIs and plastic strength. Yet, model error remains a key limitation, and a post hoc uncertainty inflation correction provides a viable means to mitigate this limitation. These findings illustrate both the promise and limits of uncertainty-aware AL for predicting complex material properties.

cond-mat.mtrl-sci

ProxPI: Proximal Prior Injection for Sampling-Based MPC under Learned-Prior Mismatch

Combining learned policies with model predictive control can leverage learned task priors while retaining online adaptation to new objectives and constraints, but performance degrades when the policy is out of distribution. In policy-guided model predictive path integral (MPPI) control, a policy-centered warm-start approach centers the sampling distribution on the policy output. When the prior is mismatched, centering the sampling distribution on the policy output restricts exploration around an unsuitable solution and prevents recovery toward the task optimum. We propose Proximal Prior Injection (ProxPI), which retains nominal-centered MPPI sampling and incorporates the policy through a soft proximity cost. This matches the in-distribution performance of existing prior-injection schemes while enabling the optimizer to escape an inaccurate policy and recover vanilla MPPI-level performance. We theoretically show that re-centering on the prior discards the optimizer's correction at every update, whereas nominal-centered sampling retains it and converges to a solution set by both the task cost and the prior, and that this failure is not removed by a larger rollout budget. Simulations and real-robot experiments demonstrate robust performance under both in-distribution and out-of-distribution tasks.

cs.RO

Geometric integrators for adiabatically closed simple thermodynamic systems

A variational formulation for non-equilibrium thermodynamics was developed by Gay-Balmaz and Yoshimura. In a recent article, the first two authors of the present paper introduced partially cosymplectic structures as a geometric framework for thermodynamic systems, recovering the evolution equations obtained variationally. In this paper, we develop a discrete variational principle for adiabatically closed simple thermodynamic systems, which can be utilised to construct numerical integrators for the dynamics of such systems. The effectiveness of our method is illustrated with several examples.

math-ph

Why Multi-Layer Message Passing Works: Completeness Theory for Graph Neural Network Interatomic Potentials

We prove that the Hypergraph Neural Network, an invariant architecture with 3-body message passing, is a universal approximator for potential energy surfaces. Our main contribution is a multi-layer completeness theory. We show that $L$ layers of message passing on sparse, cutoff-based graphs achieve the same representational power as having access to the full $L$-hop neighborhood, provided the configurations are generic, satisfy an overlap condition and a connectivity condition. This provides the first rigorous justification for the common practice of using multi-layer message passing with a per-layer cutoff smaller than the physical interaction range, the setting used by virtually all practical graph neural network based machine-learned interatomic potentials. As immediate consequences, we show that both DPA3 and CHGNet architectures inherit universal approximation.

cs.LG

A brief history of quantum vs classical computational advantage

In this review article we summarize all experiments claiming quantum computational advantage to date. Our review highlights challenges, loopholes, and refutations appearing in subsequent work to provide a complete picture of the current statuses of these experiments. In addition, we also discuss theoretical computational advantage in example problems such as approximate optimization and recommendation systems. Finally, we review recent experiments in quantum error correction -- the biggest frontier to reach experimental quantum advantage in Shor's algorithm.

quant-ph

Convergence and efficiency proof of quantum imaginary time evolution for bounded order systems

Many current and near-future applications of quantum computing utilise parametric families of quantum circuits and variational methods that can suffer from obstacles including non-convergence to the global minimum due to local minima, critical slowing down, or exponential resource scaling. Here we show that quantum imaginary time evolution can overcome these obstacles if the underlying physical system satisfies a set of conditions. This includes many relevant applications such as ground state preparation for local theories in physics or chemistry, combinatorial optimisation problems, or quantum machine learning. In particular, we analyse the quantum imaginary time evolution showing convergence guarantees to the global minimum without critical slowing down and providing a priori estimates on the required evolution time which scale linearly in system size and inverse energy gap. Furthermore, a provided complexity analysis shows that quantum imaginary time evolution can be efficiently compiled into a parametric quantum circuit, finding the optimal parameters included, for a large class of physically relevant problems.

quant-ph