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Open is not forever: a study of vanished open access journals

The preservation of the scholarly record has been a point of concern since the beginning of knowledge production. With print publications, the responsibility rested primarily with librarians, but the shift toward digital publishing and, in particular, the introduction of open access (OA) have caused ambiguity and complexity. Consequently, the long-term accessibility of journals is not always guaranteed, and they can even disappear from the web completely. The focus of this exploratory study is on the phenomenon of vanished journals, something that has not been carried out before. For the analysis, we consulted several major bibliographic indexes, such as Scopus, Ulrichsweb, and the Directory of Open Access Journals, and traced the journals through the Internet Archive's Wayback Machine. We found 174 OA journals that, through lack of comprehensive and open archives, vanished from the web between 2000 and 2019, spanning all major research disciplines and geographic regions of the world. Our results raise vital concern for the integrity of the scholarly record and highlight the urgency to take collaborative action to ensure continued access and prevent the loss of more scholarly knowledge. We encourage those interested in the phenomenon of vanished journals to use the public dataset for their own research.

cs.DL

The Source-Normalized Impact per Paper (SNIP) is a valid and sophisticated indicator of journal citation impact

This paper is a reply to the article "Scopus's Source Normalized Impact per Paper (SNIP) versus a Journal Impact Factor based on Fractional Counting of Citations", published by Loet Leydesdorff and Tobias Opthof (arXiv:1004.3580v2 [cs.DL]). It clarifies the relationship between SNIP and Elsevier's Scopus. Since Leydesdorff and Opthof's description of SNIP is not complete, it indicates four key differences between SNIP and the indicator proposed by the two authors, and argues why the former is more valid than the latter. Nevertheless, the idea of fractional citation counting deserves further exploration. The paper discusses difficulties that arise if one attempts to apply this principle at the level of individual (citing) papers.

cs.DL

Are there stars in Bluesky? A comparative exploratory analysis of altmetric mentions between X and Bluesky

This study examines the shift in the scientific community from X (formerly Twitter) to Bluesky, its impact on scientific communication, and consequently on social metrics (altmetrics). Analyzing 10,174 publications from multidisciplinary and library and information science (LIS) journals in 2024, the results reveal a notable increase in Bluesky activity for multidisciplinary journals in November 2024, likely influenced by political and platform changes, with mentions doubling or quadrupling for journals like Nature and Science. In LIS, the adoption of Bluesky is more limited and shows significant variations across journals, suggesting discipline-specific adoption patterns. However, overall engagement on Bluesky remains significantly lower than on X. While X currently dominates altmetric mentions, the observed growth on Bluesky suggests a potential shift in the future, underscoring its emerging role in academic dissemination and the challenges of adapting scholarly communication metrics across evolving platforms.

cs.DL

LCSH, SKOS and Linked Data

A technique for converting Library of Congress Subject Headings MARCXML to Simple Knowledge Organization System (SKOS) RDF is described. Strengths of the SKOS vocabulary are highlighted, as well as possible points for extension, and the integration of other semantic web vocabularies such as Dublin Core. An application for making the vocabulary available as linked-data on the Web is also described.

cs.DL

Thinking Outside the Black Box: Insights from a Digital Exhibition in the Humanities

One of the main goals of Open Science is to make research more reproducible. There is no consensus, however, on what exactly "reproducibility" is, as opposed for example to "replicability", and how it applies to different research fields. After a short review of the literature on reproducibility/replicability with a focus on the humanities, we describe how the creation of the digital twin of the temporary exhibition "The Other Renaissance" has been documented throughout, with different methods, but with constant attention to research transparency, openness and accountability. A careful documentation of the study design, data collection and analysis techniques helps reflect and make all possible influencing factors explicit, and is a fundamental tool for reliability and rigour and for opening the "black box" of research.

cs.DL

Supporting Knowledge and Expertise Finding within Australia's Defence Science and Technology Organisation

This paper reports on work aimed at supporting knowledge and expertise finding within a large Research and Development (R&D) organisation. The paper first discusses the nature of knowledge important to R&D organisations and presents a prototype information system developed to support knowledge and expertise finding. The paper then discusses a trial of the system within an R&D organisation, the implications and limitations of the trial, and discusses future research questions.

cs.OH

Exploiting Social Annotation for Automatic Resource Discovery

Information integration applications, such as mediators or mashups, that require access to information resources currently rely on users manually discovering and integrating them in the application. Manual resource discovery is a slow process, requiring the user to sift through results obtained via keyword-based search. Although search methods have advanced to include evidence from document contents, its metadata and the contents and link structure of the referring pages, they still do not adequately cover information sources -- often called ``the hidden Web''-- that dynamically generate documents in response to a query. The recently popular social bookmarking sites, which allow users to annotate and share metadata about various information sources, provide rich evidence for resource discovery. In this paper, we describe a probabilistic model of the user annotation process in a social bookmarking system del.icio.us. We then use the model to automatically find resources relevant to a particular information domain. Our experimental results on data obtained from \emph{del.icio.us} show this approach as a promising method for helping automate the resource discovery task.

cs.AI

Personalizing Image Search Results on Flickr

The social media site Flickr allows users to upload their photos, annotate them with tags, submit them to groups, and also to form social networks by adding other users as contacts. Flickr offers multiple ways of browsing or searching it. One option is tag search, which returns all images tagged with a specific keyword. If the keyword is ambiguous, e.g., ``beetle'' could mean an insect or a car, tag search results will include many images that are not relevant to the sense the user had in mind when executing the query. We claim that users express their photography interests through the metadata they add in the form of contacts and image annotations. We show how to exploit this metadata to personalize search results for the user, thereby improving search performance. First, we show that we can significantly improve search precision by filtering tag search results by user's contacts or a larger social network that includes those contact's contacts. Secondly, we describe a probabilistic model that takes advantage of tag information to discover latent topics contained in the search results. The users' interests can similarly be described by the tags they used for annotating their images. The latent topics found by the model are then used to personalize search results by finding images on topics that are of interest to the user.

cs.IR

Recommending Related Papers Based on Digital Library Access Records

An important goal for digital libraries is to enable researchers to more easily explore related work. While citation data is often used as an indicator of relatedness, in this paper we demonstrate that digital access records (e.g. http-server logs) can be used as indicators as well. In particular, we show that measures based on co-access provide better coverage than co-citation, that they are available much sooner, and that they are more accurate for recent papers.

cs.DL

Using Access Data for Paper Recommendations on ArXiv.org

This thesis investigates in the use of access log data as a source of information for identifying related scientific papers. This is done for arXiv.org, the authority for publication of e-prints in several fields of physics. Compared to citation information, access logs have the advantage of being immediately available, without manual or automatic extraction of the citation graph. Because of that, a main focus is on the question, how far user behavior can serve as a replacement for explicit meta-data, which potentially might be expensive or completely unavailable. Therefore, we compare access, content, and citation-based measures of relatedness on different recommendation tasks. As a final result, an online recommendation system has been built that can help scientists to find further relevant literature, without having to search for them actively.

cs.DL

Evaluating Personal Archiving Strategies for Internet-based Information

Internet-based personal digital belongings present different vulnerabilities than locally stored materials. We use responses to a survey of people who have recovered lost websites, in combination with supplementary interviews, to paint a fuller picture of current curatorial strategies and practices. We examine the types of personal, topical, and commercial websites that respondents have lost and the reasons they have lost this potentially valuable material. We further explore what they have tried to recover and how the loss influences their subsequent practices. We found that curation of personal digital materials in online stores bears some striking similarities to the curation of similar materials stored locally in that study participants continue to archive personal assets by relying on a combination of benign neglect, sporadic backups, and unsystematic file replication. However, we have also identified issues specific to Internet-based material: how risk is spread by distributing the files among multiple servers and services; the circular reasoning participants use when they discuss the safety of their digital assets; and the types of online material that are particularly vulnerable to loss. The study reveals ways in which expectations of permanence and notification are violated and situations in which benign neglect has far greater consequences for the long-term fate of important digital assets.

cs.DL

The Long Term Fate of Our Digital Belongings: Toward a Service Model for Personal Archives

We conducted a preliminary field study to understand the current state of personal digital archiving in practice. Our aim is to design a service for the long-term storage, preservation, and access of digital belongings by examining how personal archiving needs intersect with existing and emerging archiving technologies, best practices, and policies. Our findings not only confirmed that experienced home computer users are creating, receiving, and finding an increasing number of digital belongings, but also that they have already lost irreplaceable digital artifacts such as photos, creative efforts, and records. Although participants reported strategies such as backup and file replication for digital safekeeping, they were seldom able to implement them consistently. Four central archiving themes emerged from the data: (1) people find it difficult to evaluate the worth of accumulated materials; (2) personal storage is highly distributed both on- and offline; (3) people are experiencing magnified curatorial problems associated with managing files in the aggregate, creating appropriate metadata, and migrating materials to maintainable formats; and (4) facilities for long-term access are not supported by the current desktop metaphor. Four environmental factors further complicate archiving in consumer settings: the pervasive influence of malware; consumer reliance on ad hoc IT providers; an accretion of minor system and registry inconsistencies; and strong consumer beliefs about the incorruptibility of digital forms, the reliability of digital technologies, and the social vulnerability of networked storage.

cs.DL

Approximate textual retrieval

An approximate textual retrieval algorithm for searching sources with high levels of defects is presented. It considers splitting the words in a query into two overlapping segments and subsequently building composite regular expressions from interlacing subsets of the segments. This procedure reduces the probability of missed occurrences due to source defects, yet diminishes the retrieval of irrelevant, non-contextual occurrences.

cs.IR

Tracking User Attention in Collaborative Tagging Communities

Collaborative tagging has recently attracted the attention of both industry and academia due to the popularity of content-sharing systems such as CiteULike, del.icio.us, and Flickr. These systems give users the opportunity to add data items and to attach their own metadata (or tags) to stored data. The result is an effective content management tool for individual users. Recent studies, however, suggest that, as tagging communities grow, the added content and the metadata become harder to manage due to an ease in content diversity. Thus, mechanisms that cope with increase of diversity are fundamental to improve the scalability and usability of collaborative tagging systems. This paper analyzes whether usage patterns can be harnessed to improve navigability in a growing knowledge space. To this end, it presents a characterization of two collaborative tagging communities that target scientific literature: CiteULike and Bibsonomy. We explore three main directions: First, we analyze the tagging activity distribution across the user population. Second, we define new metrics for similarity in user interest and use these metrics to uncover the structure of the tagging communities we study. The structure we uncover suggests a clear segmentation of interests into a large number of individuals with unique preferences and a core set of users with interspersed interests. Finally, we offer preliminary results that demonstrate that the interest-based structure of the tagging community can be used to facilitate content usage as communities scale.

cs.DL

Scientific citations in Wikipedia

The Internet-based encyclopaedia Wikipedia has grown to become one of the most visited web-sites on the Internet. However, critics have questioned the quality of entries, and an empirical study has shown Wikipedia to contain errors in a 2005 sample of science entries. Biased coverage and lack of sources are among the "Wikipedia risks". The present work describes a simple assessment of these aspects by examining the outbound links from Wikipedia articles to articles in scientific journals with a comparison against journal statistics from Journal Citation Reports such as impact factors. The results show an increasing use of structured citation markup and good agreement with the citation pattern seen in the scientific literature though with a slight tendency to cite articles in high-impact journals such as Nature and Science. These results increase confidence in Wikipedia as an good information organizer for science in general.

cs.DL

Open Access Publishing in Particle Physics: A Brief Introduction for the non-Expert

Open Access to particle physics literature does not sound particularly new or exciting, since particle physicists have been reading preprints for decades, and arXiv.org for 15 years. However new movements in Europe are attempting to make the peer-reviewed literature of the field fully Open Access. This is not a new movement, nor is it restricted to this field. However, given the field's history of preprints and eprints, it is well suited to a change to a fully Open Access publishing model. Data shows that 90% of HEP published literature is freely available online, meaning that HEP libraries have little need for expensive journal subscriptions. As libraries begin to cancel journal subscriptions, the peer review process will lose its primary source of funding. Open Access publishing models can potentially address this issue. European physicists and funding agencies are proposing a consortium, SCOAP3, that might solve many of the objections to traditional Open Access publishing models in Particle Physics. These proposed changes should be viewed as a starting point for a serious look at the field's publication model, and are at least worthy of attention, if not adoption.

cs.DL

Submission of content to a digital object repository using a configurable workflow system

The prototype of a workflow system for the submission of content to a digital object repository is here presented. It is based entirely on open-source standard components and features a service-oriented architecture. The front-end consists of Java Business Process Management (jBPM), Java Server Faces (JSF), and Java Server Pages (JSP). A Fedora Repository and a mySQL data base management system serve as a back-end. The communication between front-end and back-end uses a SOAP minimal binding stub. We describe the design principles and the construction of the prototype and discuss the possibilities and limitations of work ow creation by administrators. The code of the prototype is open-source and can be retrieved in the project escipub at http://sourceforge.net

cs.DL

Removing Manually-Generated Boilerplate from Electronic Texts: Experiments with Project Gutenberg e-Books

Collaborative work on unstructured or semi-structured documents, such as in literature corpora or source code, often involves agreed upon templates containing metadata. These templates are not consistent across users and over time. Rule-based parsing of these templates is expensive to maintain and tends to fail as new documents are added. Statistical techniques based on frequent occurrences have the potential to identify automatically a large fraction of the templates, thus reducing the burden on the programmers. We investigate the case of the Project Gutenberg corpus, where most documents are in ASCII format with preambles and epilogues that are often copied and pasted or manually typed. We show that a statistical approach can solve most cases though some documents require knowledge of English. We also survey various technical solutions that make our approach applicable to large data sets.

cs.DL