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arXiv · 1004.2076

Generalized-Ensemble Algorithms for the Isobaric-Isothermal Ensemble

Yoshiharu Mori·Yuko Okamoto
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Abstract

We present generalized-ensemble algorithms for isobaric-isothermal molecular simulations. In addition to the multibaric-multithermal algorithm and replica-exchange method for the isobaric-isothermal ensemble, which have already been proposed, we propose a simulated tempering method for this ensemble. We performed molecular dynamics simulations with these algorithms for an alanine dipeptide system in explicit water molecules to test the effectiveness of the algorithms. We found that these generalized-ensemble algorithms are all useful for conformational sampling of biomolecular systems in the isobaric-isothermal ensemble.

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Yoshiharu Mori, Yuko Okamoto. 2010-04-12. Generalized-Ensemble Algorithms for the Isobaric-Isothermal Ensemble. https://arxiv.org/abs/1004.2076

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