SearcharxivSearch

arXiv · 1205.6857

Coupled MCMC with a randomized acceptance probability

Abstract

We consider Metropolis Hastings MCMC in cases where the log of the ratio of target distributions is replaced by an estimator. The estimator is based on m samples from an independent online Monte Carlo simulation. Under some conditions on the distribution of the estimator the process resembles Metropolis Hastings MCMC with a randomized transition kernel. When this is the case there is a correction to the estimated acceptance probability which ensures that the target distribution remains the equilibrium distribution. The simplest versions of the Penalty Method of Ceperley and Dewing (1999), the Universal Algorithm of Ball et al. (2003) and the Single Variable Exchange algorithm of Murray et al. (2006) are special cases. In many applications of interest the correction terms cannot be computed. We consider approximate versions of the algorithms. We show that on average O(m) of the samples realized by a simulation approximating a randomized chain of length n are exactly the same as those of a coupled (exact) randomized chain. Approximation biases Monte Carlo estimates with terms O(1/m) or smaller. This should be compared to the Monte Carlo error which is O(1/sqrt(n)).

Explore related subjects

Keep this discovery

BibTeXRIS

Geoff K. Nicholls, Colin Fox, Alexis Muir Watt. 2012-05-30. Coupled MCMC with a randomized acceptance probability. https://arxiv.org/abs/1205.6857

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

Estimating Hierarchically Rank Structured Covariance Matrices

We consider the problem of estimating a high-dimensional covariance matrix from a very limited number of samples. This problem is ubiquitous in computational fluid dynamics, where a small number of fluid snapshots must be used to construct a Gramian matrix determining a reduced-order model, as well as in computational geoscience, where a small ensemble of Earth system forecasts must be used to estimate the covariance matrix associated with the forecast uncertainty. It is common practice to regularize the small-sample covariance by imposing a "localization" structure that enforces a physically realistic correlation length scale, imposing a sparsity constraint, "shrinking" towards a prescribed target, or attenuating small correlations. We propose an alternate technique that regularizes the small-sample covariance by imposing hierarchical rank structure. Compared to regularization methods that assume sparsity such as spatial localization, hierarchical rank structure accommodates a wider range of covariance matrices, roughly corresponding to situations where long-range correlations vary more smoothly than short-range ones. It also results in a data-sparse matrix format that permits highly efficient matrix-vector products. We present theory and algorithms which show how to efficiently estimate a high-dimensional, hierarchically rank structured covariance matrix from limited samples. Through an error analysis and numerical experiments with a variety of model problems, we demonstrate that these techniques are effective at reducing sampling errors, and that in many cases they achieve smaller estimation error than conventional techniques.

stat.CO

Optimal Slice-Adaptive Tuning of Hybrid Slice Sampling

Slice sampling is a Markov chain Monte Carlo algorithm that draws its next state uniformly from a "slice"---a super-level set of the target density function---at each iteration, thereby providing automatic local adaptivity to the scale of the target. In practice the exact slice is not known, so general-purpose implementations use an approximate slice that is grown from a starting interval of length $w>0$, with a computational cost that depends on $w$. This work presents an analysis of the average per-iteration number of target density evaluations, as a function of $w$, of hybrid slice sampling with various slice-finding schemes for targets with contiguous slices. The paper uses the results of the analysis to develop automated, slice-adaptive tuning schemes along with suboptimality bounds and asymptotic convergence guarantees. Simulations demonstrate that the tuning schemes reliably yield near-optimal slice-adaptive tuning with essentially no dependence on the initial setting of $w$.

stat.CO