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arXiv · 1310.8598

Mode-coupling points to functionally important residues in Myosin II

Onur Varol·Deniz Yuret·Burak Erman·Alkan Kabakçıoğlu
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Abstract

Relevance of mode coupling to energy/information transfer during protein function, particularly in the context of allosteric interactions is widely accepted. However, existing evidence in favor of this hypothesis comes essentially from model systems. We here report a novel formal analysis of the near-native dynamics of myosin II, which allows us to explore the impact of the interaction between possibly non-Gaussian vibrational modes on fluctutational dynamics. We show that, an information-theoretic measure based on mode coupling {\it alone} yields a ranking of residues with a statistically significant bias favoring the functionally critical locations identified by experiments on myosin II.

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Onur Varol, Deniz Yuret, Burak Erman, Alkan Kabakçıoğlu. 2013-10-31. Mode-coupling points to functionally important residues in Myosin II. https://arxiv.org/abs/1310.8598

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