Tempering by Subsampling

Jan-Willem van de Meent; Brooks Paige; Frank Wood

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arXiv · 1401.7145

Tempering by Subsampling

Jan-Willem van de Meent·Brooks Paige·Frank Wood

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Abstract

In this paper we demonstrate that tempering Markov chain Monte Carlo samplers for Bayesian models by recursively subsampling observations without replacement can improve the performance of baseline samplers in terms of effective sample size per computation. We present two tempering by subsampling algorithms, subsampled parallel tempering and subsampled tempered transitions. We provide an asymptotic analysis of the computational cost of tempering by subsampling, verify that tempering by subsampling costs less than traditional tempering, and demonstrate both algorithms on Bayesian approaches to learning the mean of a high dimensional multivariate Normal and estimating Gaussian process hyperparameters.

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Jan-Willem van de Meent, Brooks Paige, Frank Wood. 2014-01-28. Tempering by Subsampling. https://arxiv.org/abs/1401.7145

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