SearcharxivSearch

arXiv · 1403.2805

The jsonlite Package: A Practical and Consistent Mapping Between JSON Data and R Objects

Abstract

A naive realization of JSON data in R maps JSON arrays to an unnamed list, and JSON objects to a named list. However, in practice a list is an awkward, inefficient type to store and manipulate data. Most statistical applications work with (homogeneous) vectors, matrices or data frames. Therefore JSON packages in R typically define certain special cases of JSON structures which map to simpler R types. Currently there exist no formal guidelines, or even consensus between implementations on how R data should be represented in JSON. Furthermore, upon closer inspection, even the most basic data structures in R actually do not perfectly map to their JSON counterparts and leave some ambiguity for edge cases. These problems have resulted in different behavior between implementations and can lead to unexpected output. This paper explicitly describes a mapping between R classes and JSON data, highlights potential problems, and proposes conventions that generalize the mapping to cover all common structures. We emphasize the importance of type consistency when using JSON to exchange dynamic data, and illustrate using examples and anecdotes. The jsonlite R package is used throughout the paper as a reference implementation.

Explore related subjects

Keep this discovery

BibTeXRIS

Jeroen Ooms. 2014-03-12. The jsonlite Package: A Practical and Consistent Mapping Between JSON Data and R Objects. https://arxiv.org/abs/1403.2805

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

Estimating Hierarchically Rank Structured Covariance Matrices

We consider the problem of estimating a high-dimensional covariance matrix from a very limited number of samples. This problem is ubiquitous in computational fluid dynamics, where a small number of fluid snapshots must be used to construct a Gramian matrix determining a reduced-order model, as well as in computational geoscience, where a small ensemble of Earth system forecasts must be used to estimate the covariance matrix associated with the forecast uncertainty. It is common practice to regularize the small-sample covariance by imposing a "localization" structure that enforces a physically realistic correlation length scale, imposing a sparsity constraint, "shrinking" towards a prescribed target, or attenuating small correlations. We propose an alternate technique that regularizes the small-sample covariance by imposing hierarchical rank structure. Compared to regularization methods that assume sparsity such as spatial localization, hierarchical rank structure accommodates a wider range of covariance matrices, roughly corresponding to situations where long-range correlations vary more smoothly than short-range ones. It also results in a data-sparse matrix format that permits highly efficient matrix-vector products. We present theory and algorithms which show how to efficiently estimate a high-dimensional, hierarchically rank structured covariance matrix from limited samples. Through an error analysis and numerical experiments with a variety of model problems, we demonstrate that these techniques are effective at reducing sampling errors, and that in many cases they achieve smaller estimation error than conventional techniques.

stat.CO

Optimal Slice-Adaptive Tuning of Hybrid Slice Sampling

Slice sampling is a Markov chain Monte Carlo algorithm that draws its next state uniformly from a "slice"---a super-level set of the target density function---at each iteration, thereby providing automatic local adaptivity to the scale of the target. In practice the exact slice is not known, so general-purpose implementations use an approximate slice that is grown from a starting interval of length $w>0$, with a computational cost that depends on $w$. This work presents an analysis of the average per-iteration number of target density evaluations, as a function of $w$, of hybrid slice sampling with various slice-finding schemes for targets with contiguous slices. The paper uses the results of the analysis to develop automated, slice-adaptive tuning schemes along with suboptimality bounds and asymptotic convergence guarantees. Simulations demonstrate that the tuning schemes reliably yield near-optimal slice-adaptive tuning with essentially no dependence on the initial setting of $w$.

stat.CO