Particle Gibbs Split-Merge Sampling for Bayesian Inference in Mixture Models

Alexandre Bouchard-Côté; Arnaud Doucet; Andrew Roth

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arXiv · 1508.02663

Particle Gibbs Split-Merge Sampling for Bayesian Inference in Mixture Models

Alexandre Bouchard-Côté·Arnaud Doucet·Andrew Roth

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Abstract

This paper presents a new Markov chain Monte Carlo method to sample from the posterior distribution of conjugate mixture models. This algorithm relies on a flexible split-merge procedure built using the particle Gibbs sampler. Contrary to available split-merge procedures, the resulting so-called Particle Gibbs Split-Merge sampler does not require the computation of a complex acceptance ratio, is simple to implement using existing sequential Monte Carlo libraries and can be parallelized. We investigate its performance experimentally on synthetic problems as well as on geolocation and cancer genomics data. In all these examples, the particle Gibbs split-merge sampler outperforms state-of-the-art split-merge methods by up to an order of magnitude for a fixed computational complexity.

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BibTeX RIS

Alexandre Bouchard-Côté, Arnaud Doucet, Andrew Roth. 2015-08-11. Particle Gibbs Split-Merge Sampling for Bayesian Inference in Mixture Models. https://arxiv.org/abs/1508.02663

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