SearcharxivSearch

arXiv · 1511.00108

Recursive computation for evaluating the exact $p$-values of temporal and spatial scan statistics

Abstract

Let $V$ be a finite set of indices, and let $B_i$, $i=1,\ldots,m$, be subsets of $V$ such that $V=\bigcup_{i=1}^{m}B_i$. Let $X_i$, $i\in V$, be independent random variables, and let $X_{B_i}=(X_j)_{j\in B_i}$. In this paper, we propose a recursive computation method to calculate the conditional expectation $E\bigl[\prod_{i=1}^mχ_i(X_{B_i}) \,|\, N\bigr]$ with $N=\sum_{i\in V}X_i$ given, where $χ_i$ is an arbitrary function. Our method is based on the recursive summation/integration technique using the Markov property in statistics. To extract the Markov property, we define an undirected graph whose cliques are $B_j$, and obtain its chordal extension, from which we present the expressions of the recursive formula. This methodology works for a class of distributions including the Poisson distribution (that is, the conditional distribution is the multinomial). This problem is motivated from the evaluation of the multiplicity-adjusted $p$-value of scan statistics in spatial epidemiology. As an illustration of the approach, we present the real data analyses to detect temporal and spatial clustering.

Explore related subjects

Keep this discovery

BibTeXRIS

Satoshi Kuriki, Kunihiko Takahashi, Hisayuki Hara. 2015-10-31. Recursive computation for evaluating the exact $p$-values of temporal and spatial scan statistics. https://arxiv.org/abs/1511.00108

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

Estimating Hierarchically Rank Structured Covariance Matrices

We consider the problem of estimating a high-dimensional covariance matrix from a very limited number of samples. This problem is ubiquitous in computational fluid dynamics, where a small number of fluid snapshots must be used to construct a Gramian matrix determining a reduced-order model, as well as in computational geoscience, where a small ensemble of Earth system forecasts must be used to estimate the covariance matrix associated with the forecast uncertainty. It is common practice to regularize the small-sample covariance by imposing a "localization" structure that enforces a physically realistic correlation length scale, imposing a sparsity constraint, "shrinking" towards a prescribed target, or attenuating small correlations. We propose an alternate technique that regularizes the small-sample covariance by imposing hierarchical rank structure. Compared to regularization methods that assume sparsity such as spatial localization, hierarchical rank structure accommodates a wider range of covariance matrices, roughly corresponding to situations where long-range correlations vary more smoothly than short-range ones. It also results in a data-sparse matrix format that permits highly efficient matrix-vector products. We present theory and algorithms which show how to efficiently estimate a high-dimensional, hierarchically rank structured covariance matrix from limited samples. Through an error analysis and numerical experiments with a variety of model problems, we demonstrate that these techniques are effective at reducing sampling errors, and that in many cases they achieve smaller estimation error than conventional techniques.

stat.CO

Optimal Slice-Adaptive Tuning of Hybrid Slice Sampling

Slice sampling is a Markov chain Monte Carlo algorithm that draws its next state uniformly from a "slice"---a super-level set of the target density function---at each iteration, thereby providing automatic local adaptivity to the scale of the target. In practice the exact slice is not known, so general-purpose implementations use an approximate slice that is grown from a starting interval of length $w>0$, with a computational cost that depends on $w$. This work presents an analysis of the average per-iteration number of target density evaluations, as a function of $w$, of hybrid slice sampling with various slice-finding schemes for targets with contiguous slices. The paper uses the results of the analysis to develop automated, slice-adaptive tuning schemes along with suboptimality bounds and asymptotic convergence guarantees. Simulations demonstrate that the tuning schemes reliably yield near-optimal slice-adaptive tuning with essentially no dependence on the initial setting of $w$.

stat.CO