Searcharxiv⌕ Search
Home/Archive/arXiv

arXiv · 1607.03718

Streaming Algorithms For Computing Edit Distance Without Exploiting Suffix Trees

Diptarka Chakraborty·Elazar Goldenberg·Michal Koucký
View original source ↗Read source document ↗Export metadata ↓

Abstract

The edit distance is a way of quantifying how similar two strings are to one another by counting the minimum number of character insertions, deletions, and substitutions required to transform one string into the other. In this paper we study the computational problem of computing the edit distance between a pair of strings where their distance is bounded by a parameter $k\ll n$. We present two streaming algorithms for computing edit distance: One runs in time $O(n+k^2)$ and the other $n+O(k^3)$. By writing $n+O(k^3)$ we want to emphasize that the number of operations per an input symbol is a small constant. In particular, the running time does not depend on the alphabet size, and the algorithm should be easy to implement. Previously a streaming algorithm with running time $O(n+k^4)$ was given in the paper by the current authors (STOC'16). The best off-line algorithm runs in time $O(n+k^2)$ (Landau et al., 1998) which is known to be optimal under the Strong Exponential Time Hypothesis.

Explore related subjects

cs.DScs.CC

Keep this discovery

BibTeXRIS

Diptarka Chakraborty, Elazar Goldenberg, Michal Koucký. 2016-07-13. Streaming Algorithms For Computing Edit Distance Without Exploiting Suffix Trees. https://arxiv.org/abs/1607.03718

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

arXiv2026

Quasi-Monte Carlo Beyond Hardy-Krause II: $(1 + \varepsilon)n$ Samples Suffice

Numerical integration studies how well one can estimate the integral of a function $f$ over $[0,1)^d$ using $n$ sample points. The two classical methods, Monte Carlo (MC) and quasi-Monte Carlo (QMC), have complementary strengths and weaknesses, and a fundamental question is to design an approach that combines the benefits of both. Recently, building on the transference principle in discrepancy theory, Bansal and Jiang~\cite{BJ25a} gave a randomized QMC method that bridges MC and QMC guarantees using only i.i.d.\ samples. Their method also goes beyond the classical Koksma--Hlawka inequality: it achieves integration error $\widetilde{O}_d(\sigma_{\mathsf{SO}}(f)/n)$, where the smoothed-out variation $\sigma_{\mathsf{SO}}(f)$ can be substantially smaller than the Hardy--Krause variation that governs the classical bound. However, their algorithm requires $n^2$ i.i.d.\ samples as input, and this quadratic blowup is inherent to any method based on the transference principle. In this work, we bypass the quadratic blowup: for any constant $\varepsilon > 0$, we show that $(1+\varepsilon)n$ i.i.d.\ samples suffice to both obtain the beyond-Hardy--Krause guarantee of~\cite{BJ25a}, resolving an open problem posed there, and to produce low-discrepancy point sequences. Our algorithms are variants of the online Haar-thinning method of Dwivedi, Feldheim, Gurel-Gurevich, and Ramdas~\cite{DFG+19}.

cs.DS↗
arXiv2026

Single-Exponential Algorithms and a Polynomial Kernel for Strong Connectivity Augmentation

Strong Connectivity Augmentation (SCA) asks whether a directed acyclic graph can be made strongly connected by adding at most $k$ prescribed links whose total weight is within a given budget. Klinkby, Misra, and Saurabh (SODA 2021) gave an $O^*(2^{O(k\log k)})$-time algorithm and asked whether the problem admits a single-exponential parameterized algorithm and a polynomial kernel. We answer both questions affirmatively: SCA can be solved in $O^*(9^k)$ time and admits a polynomial kernel with $O(k^4)$ vertices and $O(k^{16})$ bits. For unweighted SCA, we obtain $O^*(4^k)$ time and a kernel with $O(k^3)$ vertices. Our algorithms are based on a particularly simple reduction to Strongly Connected Spanning Subgraph with two edge costs.

cs.DS↗