A Sequential Scheme for Large Scale Bayesian Multiple Testing

Abstract

The problem of large scale multiple testing arises in many contexts, including testing for pairwise interaction among large numbers of neurons. With advances in technologies, it has become common to record from hundreds of neurons simultaneously, and this number is growing quickly, so that the number of pairwise tests can be very large. It is important to control the rate at which false positives occur. In addition, there is sometimes information that affects the probability of a positive result for any given pair. In the case of neurons, they are more likely to have correlated activity when they are close together, and when they respond similarly to various stimuli. Recently a method was developed to control false positives when covariate information, such as distances between pairs of neurons, is available. This method, however, relies on computationally-intensive Markov Chain Monte Carlo (MCMC). Here we develop an alternative, based on Sequential Monte Carlo, which scales well with the size of the dataset. This scheme considers data items sequentially, with relevant probabilities being updated at each step. Simulation experiments demonstrate that the proposed algorithm delivers results as accurately as the previous MCMC method with only a single pass through the data. We illustrate the method by using it to analyze neural recordings from extrastriate cortex in a macaque monkey.