Searcharxiv⌕ Search
Home/Archive/arXiv

arXiv · 1904.02054

DiscreteFDR: An R package for controlling the false discovery rate for discrete test statistics

Guillermo Durand·Florian Junge·Sebastian Döhler·Etienne Roquain
View original source ↗Read source document ↗Export metadata ↓

Abstract

The simultaneous analysis of many statistical tests is ubiquitous in applications. Perhaps the most popular error rate used for avoiding type one error inflation is the false discovery rate (FDR). However, most theoretical and software development for FDR control has focused on the case of continuous test statistics. For discrete data, methods that provide proven FDR control and good performance have been proposed only recently. The R package DiscreteFDR provides an implementation of these methods. For particular commonly used discrete tests such as Fisher's exact test, it can be applied as an off-the-shelf tool by taking only the raw data as input. It can also be used for any arbitrary discrete test statistics by using some additional information on the distribution of these statistics. The paper reviews the statistical methods in a non-technical way, provides a detailed description of the implementation in DiscreteFDR and presents some sample code and analyses.

Explore related subjects

stat.CO

Keep this discovery

BibTeXRIS

Guillermo Durand, Florian Junge, Sebastian Döhler, Etienne Roquain. 2019-04-03. DiscreteFDR: An R package for controlling the false discovery rate for discrete test statistics. https://arxiv.org/abs/1904.02054

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

arXiv2026

Estimating Hierarchically Rank Structured Covariance Matrices

We consider the problem of estimating a high-dimensional covariance matrix from a very limited number of samples. This problem is ubiquitous in computational fluid dynamics, where a small number of fluid snapshots must be used to construct a Gramian matrix determining a reduced-order model, as well as in computational geoscience, where a small ensemble of Earth system forecasts must be used to estimate the covariance matrix associated with the forecast uncertainty. It is common practice to regularize the small-sample covariance by imposing a "localization" structure that enforces a physically realistic correlation length scale, imposing a sparsity constraint, "shrinking" towards a prescribed target, or attenuating small correlations. We propose an alternate technique that regularizes the small-sample covariance by imposing hierarchical rank structure. Compared to regularization methods that assume sparsity such as spatial localization, hierarchical rank structure accommodates a wider range of covariance matrices, roughly corresponding to situations where long-range correlations vary more smoothly than short-range ones. It also results in a data-sparse matrix format that permits highly efficient matrix-vector products. We present theory and algorithms which show how to efficiently estimate a high-dimensional, hierarchically rank structured covariance matrix from limited samples. Through an error analysis and numerical experiments with a variety of model problems, we demonstrate that these techniques are effective at reducing sampling errors, and that in many cases they achieve smaller estimation error than conventional techniques.

stat.CO↗
arXiv2026

Optimal Slice-Adaptive Tuning of Hybrid Slice Sampling

Slice sampling is a Markov chain Monte Carlo algorithm that draws its next state uniformly from a "slice"---a super-level set of the target density function---at each iteration, thereby providing automatic local adaptivity to the scale of the target. In practice the exact slice is not known, so general-purpose implementations use an approximate slice that is grown from a starting interval of length $w>0$, with a computational cost that depends on $w$. This work presents an analysis of the average per-iteration number of target density evaluations, as a function of $w$, of hybrid slice sampling with various slice-finding schemes for targets with contiguous slices. The paper uses the results of the analysis to develop automated, slice-adaptive tuning schemes along with suboptimality bounds and asymptotic convergence guarantees. Simulations demonstrate that the tuning schemes reliably yield near-optimal slice-adaptive tuning with essentially no dependence on the initial setting of $w$.

stat.CO↗